mRNA_P-wetherbeei_contig11206.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11206.3.1
Unique NamemRNA_P-wetherbeei_contig11206.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A1Y2R710_9BURK (Uncharacterized protein n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R710_9BURK)

HSP 1 Score: 241 bits (616), Expect = 1.470e-77
Identity = 117/138 (84.78%), Postives = 129/138 (93.48%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GEVSSL DL + QLTVG+GSAGFYA QE SG++KVLAVTGPKRVARYPHIPTLAEAG+PGANLPGWYGLFLPAGTPK V++KFSDEVRRI+ALPD+QAKI+EVGFV V +S EEFSRYIATEMDTWS+VIKQNDIKVD
Sbjct:  195 GEVSSLPDLLNGQLTVGYGSAGFYAAQEASGKVKVLAVTGPKRVARYPHIPTLAEAGFPGANLPGWYGLFLPAGTPKPVLAKFSDEVRRIVALPDVQAKIEEVGFVPVGNSSEEFSRYIATEMDTWSRVIKQNDIKVD 332          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A6P2F276_9BURK (Argininosuccinate lyase n=1 Tax=Variovorax sp. PBL-H6 TaxID=434009 RepID=A0A6P2F276_9BURK)

HSP 1 Score: 184 bits (468), Expect = 3.180e-55
Identity = 83/138 (60.14%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE SS  DL S QLT  FGS GFYA Q ++G++K+LA+TG +R+AR+P++PT+AEAGYPGANLPGW GLFLPAGTP+ VVS+FS EVR+I+A+P+++AK+ ++GFV V +S +EF +YI +E+  WS +IK+N+IK+D
Sbjct:  194 GETSSFTDLASGQLTSAFGSTGFYAAQLSTGKVKLLAITGSQRMARFPNVPTMAEAGYPGANLPGWSGLFLPAGTPEPVVSRFSQEVRKILAMPEVRAKLDDMGFVPVGNSSQEFGQYIKSEVSAWSAIIKENNIKLD 331          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A6P2F0Q6_9BURK (Argininosuccinate lyase n=1 Tax=Variovorax sp. PBL-H6 TaxID=434009 RepID=A0A6P2F0Q6_9BURK)

HSP 1 Score: 158 bits (399), Expect = 6.820e-45
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE +S  DL S QL++ FG+ GFY+ Q  +G++++LAVT P R+ +YP++PTL+EAGYP  NL GW+G+FLPA TPKA+V KFS +VRR IA+PDLQA+I E+G   V  +P +F   + +E+  W+K I    IK+D
Sbjct:  192 GESASFPDLASGQLSMSFGTVGFYSAQAAAGKIRILAVTSPHRLKKYPNVPTLSEAGYPDVNLAGWFGVFLPAATPKAIVDKFSADVRRAIAMPDLQARIYEMGLEPVGDTPADFELKLKSELSHWTKAISDTGIKLD 329          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A0S9MV43_9BURK (Uncharacterized protein n=4 Tax=unclassified Pseudorhodoferax TaxID=2638544 RepID=A0A0S9MV43_9BURK)

HSP 1 Score: 157 bits (397), Expect = 9.890e-45
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE ++  DL S Q+ + +GS GFYA Q  +GR+++LAV  P+R+  +P +PTLAEAGYP  NLPGW G+FLPAGTP+A+V KF  EVRR+  LPD+QA+I E+GF  V SS  EFS  I+ ++  W  V++ N+IK++
Sbjct:  179 GEAAAFPDLASGQIELAYGSVGFYARQAGTGRVRILAVANPRRLKAFPDVPTLAEAGYPDVNLPGWGGVFLPAGTPQAIVDKFEREVRRVTLLPDVQARILELGFEPVGSSAAEFSTAISEDLQKWGAVVRANNIKLE 316          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: UPI001B2F2EC8 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=UPI001B2F2EC8)

HSP 1 Score: 149 bits (377), Expect = 1.260e-41
Identity = 63/138 (45.65%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE +S  D+ S ++ + +GS GFYA Q TSG++K++AV  P R+  +P +PT AE GYP  NLPGW  +FLPAGTP  +V K+  E+RRI ALPD+QAKI ++G+  V+++  EF++++  ++  W+++ ++NDI++D
Sbjct:  190 GEAASFTDVASGEIALAYGSVGFYANQITSGKVKLIAVASPNRLKTFPDLPTFAELGYPDINLPGWGAMFLPAGTPAPIVDKYVQEIRRITALPDVQAKIYQLGYEPVANTNTEFAQFLQEDLKRWTRIARENDIRLD 327          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A0Q7LXL7_9BURK (Uncharacterized protein n=2 Tax=Variovorax sp. Root473 TaxID=1736541 RepID=A0A0Q7LXL7_9BURK)

HSP 1 Score: 147 bits (372), Expect = 6.720e-41
Identity = 63/138 (45.65%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE +S  DL    + + +GS GFYA Q + G++K+++V   +R+ ++P +PT AEAG+P  NLPGW  +FLPA TP  VV KFS+E+R+I+A+PD+QAKI E+GF  V +S +EF+  +  ++  W K++++N+IK+D
Sbjct:  188 GEAASFIDLVGGDIDLAYGSVGFYARQLSGGKVKLISVASARRLKQFPDVPTFAEAGFPEINLPGWGAVFLPANTPAPVVEKFSNEIRKIVAMPDVQAKIYEMGFEPVGNSSKEFAGVVEADLKAWGKIVRENNIKLD 325          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A244E5P6_9BURK (Uncharacterized protein n=4 Tax=unclassified Variovorax TaxID=663243 RepID=A0A244E5P6_9BURK)

HSP 1 Score: 144 bits (364), Expect = 1.100e-39
Identity = 61/138 (44.20%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE +S  D+ S  + + +GS GFYA Q  +G++K++AV  P R+  +P +PT AE GYP  NLPGW  +FLPAGTP  +V K+  E+RRI A+PD+ AKI ++G+  V+++  EF++++  ++  W+K+ K+NDI++D
Sbjct:  190 GEAASFTDVASGDIALAYGSVGFYANQIATGKVKLIAVAAPHRLKTFPDLPTFAELGYPDINLPGWGAMFLPAGTPAPIVDKYVQEIRRITAMPDVLAKIHQLGYEPVANTNTEFTQFLQEDLKRWAKIAKENDIRLD 327          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A6P2FD14_9BURK (Argininosuccinate lyase n=4 Tax=unclassified Variovorax TaxID=663243 RepID=A0A6P2FD14_9BURK)

HSP 1 Score: 144 bits (362), Expect = 2.230e-39
Identity = 59/138 (42.75%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE +S  D+ S  + + +GS GFYA Q  +G++K++AV  P R+  +P +PT AE GYP  NLPGW  +FLPAGTP  +V K+  E+RRI+A+PD+QA+I  +G+  V+++  EF++++  ++  W+++ ++NDI++D
Sbjct:  191 GEAASFVDVASGDIALAYGSVGFYANQLATGKVKLIAVASPHRLKTFPDLPTFAELGYPDINLPGWGAMFLPAGTPAPIVEKYVQEIRRIVAMPDVQARIYALGYEPVANTNTEFAQFLQEDLKRWTRIARENDIRLD 328          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: A0A0K8P697_IDESA (Putative exported protein n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8P697_IDESA)

HSP 1 Score: 142 bits (359), Expect = 6.670e-39
Identity = 61/138 (44.20%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE ++  DL S Q+ + +GS GFY++Q  +G++K++AV  PKR+  +P++PT AE GYP  NL GW G+ LPA TP A+V K++ E+RRI+ALP++QA+I ++GF    ++ EEF++ IA ++  W  +++ N+IK++
Sbjct:  194 GEAAAFPDLVSGQIGLAYGSTGFYSSQVGTGKVKLIAVASPKRLKAFPNVPTFAEGGYPDVNLAGWGGMLLPAATPPAIVDKYTAELRRIVALPEVQARILQLGFEPAGTTREEFAQAIAGDIQRWGAIVRANNIKLE 331          
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Match: Q1LBX3_CUPMC (Extra-cytoplasmic solute receptor protein n=2 Tax=Cupriavidus metallidurans TaxID=119219 RepID=Q1LBX3_CUPMC)

HSP 1 Score: 141 bits (356), Expect = 1.780e-38
Identity = 60/138 (43.48%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHIPTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKIQEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD 414
            GE  +  DL    + + +GS GFYA Q + G+++++AV  P R+  +P++PT AEAGYP  N+PGW G+FLPA TP A+V K++ E+RRI+ALP++Q KI E+GF    ++  +FS  I++++  W K+++ N+IK++
Sbjct:  192 GESPAFTDLVGGNIELAYGSVGFYAHQLSGGKVRLIAVASPNRLKTFPNVPTFAEAGYPEINIPGWGGVFLPAKTPPAIVEKYTQEIRRIVALPEVQKKILEMGFEPTGTTSAQFSDLISSDIKRWGKIVRDNNIKLE 329          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11206.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2R710_9BURK1.470e-7784.78Uncharacterized protein n=1 Tax=Hydrogenophaga sp.... [more]
A0A6P2F276_9BURK3.180e-5560.14Argininosuccinate lyase n=1 Tax=Variovorax sp. PBL... [more]
A0A6P2F0Q6_9BURK6.820e-4551.45Argininosuccinate lyase n=1 Tax=Variovorax sp. PBL... [more]
A0A0S9MV43_9BURK9.890e-4552.17Uncharacterized protein n=4 Tax=unclassified Pseud... [more]
UPI001B2F2EC81.260e-4145.65Tripartite tricarboxylate transporter substrate bi... [more]
A0A0Q7LXL7_9BURK6.720e-4145.65Uncharacterized protein n=2 Tax=Variovorax sp. Roo... [more]
A0A244E5P6_9BURK1.100e-3944.20Uncharacterized protein n=4 Tax=unclassified Vario... [more]
A0A6P2FD14_9BURK2.230e-3942.75Argininosuccinate lyase n=4 Tax=unclassified Vario... [more]
A0A0K8P697_IDESA6.670e-3944.20Putative exported protein n=1 Tax=Ideonella sakaie... [more]
Q1LBX3_CUPMC1.780e-3843.48Extra-cytoplasmic solute receptor protein n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11206contigP-wetherbeei_contig11206:1774..2190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog266264.Rmet_5494
PFAMsTctC
Model size417
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.92e-39
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1NRAQ@1224|Proteobacteria
DescriptionTripartite tricarboxylate transporter family receptor
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185902.1220424-CDS-P-wetherbeei_contig11206:1773..21901683185902.1220424-CDS-P-wetherbeei_contig11206:1773..2190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11206 1774..2190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11206.3.1prot_P-wetherbeei_contig11206.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11206 1774..2190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11206.3.1

>prot_P-wetherbeei_contig11206.3.1 ID=prot_P-wetherbeei_contig11206.3.1|Name=mRNA_P-wetherbeei_contig11206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
GEVSSLADLFSEQLTVGFGSAGFYATQETSGRLKVLAVTGPKRVARYPHI
PTLAEAGYPGANLPGWYGLFLPAGTPKAVVSKFSDEVRRIIALPDLQAKI
QEVGFVSVSSSPEEFSRYIATEMDTWSKVIKQNDIKVD*
back to top

mRNA from alignment at P-wetherbeei_contig11206:1774..2190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11206.3.1 ID=mRNA_P-wetherbeei_contig11206.3.1|Name=mRNA_P-wetherbeei_contig11206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig11206:1774..2190- (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTCAGCTCTCTGGCCGATCTGTTCAGCGAGCAGTTGACGGTGGG CTTTGGCTCCGCCGGCTTCTATGCCACGCAGGAGACTTCGGGCAGGCTCA AGGTGCTGGCGGTCACGGGTCCGAAGCGCGTCGCGCGCTACCCGCACATC CCGACCCTGGCCGAAGCCGGCTATCCCGGGGCCAACCTGCCAGGCTGGTA CGGCTTGTTCTTGCCCGCCGGCACCCCCAAGGCGGTGGTGTCGAAGTTCT CCGACGAAGTGCGCCGCATCATTGCGTTGCCTGACTTGCAAGCCAAGATT CAGGAGGTCGGCTTCGTATCGGTAAGCAGCTCGCCCGAGGAGTTCTCCCG CTACATCGCCACCGAAATGGACACCTGGTCCAAGGTCATCAAGCAAAACG ACATCAAGGTGGATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11206:1774..2190-

>mRNA_P-wetherbeei_contig11206.3.1 ID=mRNA_P-wetherbeei_contig11206.3.1|Name=mRNA_P-wetherbeei_contig11206.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig11206:1774..2190- (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTCAGCTCTCTGGCCGATCTGTTCAGCGAGCAGTTGACGGTGGG
CTTTGGCTCCGCCGGCTTCTATGCCACGCAGGAGACTTCGGGCAGGCTCA
AGGTGCTGGCGGTCACGGGTCCGAAGCGCGTCGCGCGCTACCCGCACATC
CCGACCCTGGCCGAAGCCGGCTATCCCGGGGCCAACCTGCCAGGCTGGTA
CGGCTTGTTCTTGCCCGCCGGCACCCCCAAGGCGGTGGTGTCGAAGTTCT
CCGACGAAGTGCGCCGCATCATTGCGTTGCCTGACTTGCAAGCCAAGATT
CAGGAGGTCGGCTTCGTATCGGTAAGCAGCTCGCCCGAGGAGTTCTCCCG
CTACATCGCCACCGAAATGGACACCTGGTCCAAGGTCATCAAGCAAAACG
ACATCAAGGTGGATTGA
back to top