mRNA_P-wetherbeei_contig11192.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11192.1.1
Unique NamemRNA_P-wetherbeei_contig11192.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11192.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11192contigP-wetherbeei_contig11192:326..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185901.1331255-CDS-P-wetherbeei_contig11192:325..6281683185901.1331255-CDS-P-wetherbeei_contig11192:325..628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11192 326..628 -
1683185901.1426497-CDS-P-wetherbeei_contig11192:997..11951683185901.1426497-CDS-P-wetherbeei_contig11192:997..1195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11192 998..1195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11192.1.1prot_P-wetherbeei_contig11192.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11192 326..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11192.1.1

>prot_P-wetherbeei_contig11192.1.1 ID=prot_P-wetherbeei_contig11192.1.1|Name=mRNA_P-wetherbeei_contig11192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MERLAAKGEVAATAASSAAMPAAGREGWTNESLCAALCTALRLTPDCDDG
DKAVGRGHIQAAAGGSICWEDLPNSICLEVPVETTDIVSVLRDPWCHAVL
AVAGAANTETYLFCRSGPAYTFRRTALQETDLEELHEATVAALGRRIIAG
GEETTTAAAAATVAAAG
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mRNA from alignment at P-wetherbeei_contig11192:326..1195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11192.1.1 ID=mRNA_P-wetherbeei_contig11192.1.1|Name=mRNA_P-wetherbeei_contig11192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig11192:326..1195- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGACTGGCGGCCAAGGGGGAAGTGGCGGCGACGGCGGCATCGTC
GGCCGCCATGCCAGCTGCGGGGAGGGAGGGATGGACGAACGAGTCACTCT
GCGCCGCCCTGTGCACGGCACTGCGGCTCACTCCAGACTGCGATGACGGC
GACAAAGCCGTTGGAAGGGGACACATCCAGGCAGCTGCAGGGGGATCGGT
GCGTTGCCTCTGCGTACTTTGCCTGCTTTTTTGCGACCCCAGGAGCACGT
TTTCTTTACCAGATATCAGCGACTCTTTCTTTTCTTTGACGGACCCTTCT
TCTACTCAGCTTTTCGTTCTCGCGCCCGGGAGTGCCGCTTTTGACAGTGT
TGCCTCGCTGTAAGAGAATTGCAGCAGAGCGGGAAAACGCATAAGAAACG
CAGGCGCAGGGCTCTTGACTACGTTACCGCCGCTGCTCCCGCCGCTCCAA
ACGCCTTTGCCGCCGCTCTGGCCGTCACGGTTGTCGTCCCTCTCGCTTTC
TTTCTCTCTGCCCCGCGTTTGCTGTTTCCCCTTTGCTGCCACCATGCTTG
ATGCTTCTCTGGAGCAGATCTGCTGGGAGGATTTGCCGAACTCCATCTGC
CTAGAAGTGCCCGTGGAGACGACGGACATCGTCAGCGTCCTCCGCGACCC
GTGGTGCCACGCGGTGCTTGCCGTTGCTGGTGCCGCCAACACCGAGACGT
ATCTGTTCTGCCGCAGCGGCCCCGCCTACACGTTCCGCCGCACGGCCCTG
CAGGAAACCGATTTGGAGGAACTTCATGAGGCCACCGTGGCGGCGCTCGG
CCGCCGGATCATCGCGGGCGGCGAGGAAACAACTACTGCCGCAGCCGCTG
CCACAGTCGCTGCAGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11192:326..1195-

>mRNA_P-wetherbeei_contig11192.1.1 ID=mRNA_P-wetherbeei_contig11192.1.1|Name=mRNA_P-wetherbeei_contig11192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig11192:326..1195- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGACTGGCGGCCAAGGGGGAAGTGGCGGCGACGGCGGCATCGTC
GGCCGCCATGCCAGCTGCGGGGAGGGAGGGATGGACGAACGAGTCACTCT
GCGCCGCCCTGTGCACGGCACTGCGGCTCACTCCAGACTGCGATGACGGC
GACAAAGCCGTTGGAAGGGGACACATCCAGGCAGCTGCAGGGGGATCGAT
CTGCTGGGAGGATTTGCCGAACTCCATCTGCCTAGAAGTGCCCGTGGAGA
CGACGGACATCGTCAGCGTCCTCCGCGACCCGTGGTGCCACGCGGTGCTT
GCCGTTGCTGGTGCCGCCAACACCGAGACGTATCTGTTCTGCCGCAGCGG
CCCCGCCTACACGTTCCGCCGCACGGCCCTGCAGGAAACCGATTTGGAGG
AACTTCATGAGGCCACCGTGGCGGCGCTCGGCCGCCGGATCATCGCGGGC
GGCGAGGAAACAACTACTGCCGCAGCCGCTGCCACAGTCGCTGCAGCCGG
C
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