mRNA_P-wetherbeei_contig11143.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11143.2.2
Unique NamemRNA_P-wetherbeei_contig11143.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A6H5KBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 7.080e-28
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEG--KVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQRARAWAHRL 779
            RFHHSSFF G +VEAAGM+  ++ G L ++YPHSGHYRPT+++L  LL+FL   GVDL  L VDAQR +KVAR +++    +VRK+D PF+V A  LL F  AK+ AW +  FDEL  +      RL
Sbjct:  422 RFHHSSFFGGGYVEAAGMLVAEE-GVLKTLYPHSGHYRPTNQHLRVLLKFLNGLGVDLDALEVDAQRVHKVARPDKRASYPRVRKMDNPFMVSARYLLDFFEAKYLAWSSCHFDELYLKVNERHERL 547          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A4D9DCJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCJ4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.700e-23
Identity = 59/118 (50.00%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAR--EERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQ 752
            RFHHSSFFAGE V+AAG+ F    G L  +YPHSGHYRP+D +L  LL FL    VD+ ++ VD Q   KVAR  +  K G+ RK+D+P++        FL AK  AWD  LFDE+++
Sbjct:  269 RFHHSSFFAGECVQAAGL-FVATGGVLERLYPHSGHYRPSDSHLLSLLLFLEAQHVDMAVMQVDVQLVMKVARSHDATKGGRRRKIDSPYMWTGLHAKYFLLAKRYAWDKKLFDEMLR 385          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: W7U6C7_9STRA (Calmodulin binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6C7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.110e-23
Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAR--EERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQ 752
            RFHHSSFFAGE V+AAG+ F    G L  +YPHSGHYRP+D +L  LL FL    VD+ L+ VD Q   KVAR  +  K G+ RK+D+P++        FL AK  AWD  LFDE+++
Sbjct:  393 RFHHSSFFAGECVQAAGL-FVATGGVLERLYPHSGHYRPSDSHLLSLLLFLEAQHVDMALMQVDVQLVMKVARSHDATKGGRRRKIDSPYMWTGLHAKYFLLAKRYAWDKKLFDEMLR 509          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A8K1C508_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C508_PYTOL)

HSP 1 Score: 104 bits (259), Expect = 3.540e-21
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELM 749
            R HH+SF  GE V+ AGM+  +D G + +IYPHSGHYRP++  L  LL FL   GVDLT + VD QR  KV R       VRK+D      A  +L FL  KH AW    FDEL+
Sbjct:  144 RIHHTSFVGGECVQTAGMMVIND-GIIETIYPHSGHYRPSEHELLVLLRFLVAQGVDLTDVKVDVQRIQKVFRSSINGSLVRKIDNAHFWNAYRVLYFLEQKHLAWKIGFFDELV 257          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A1V9YJY3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJY3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.180e-20
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQRARA 764
            R HH+SF  GE V+ AG++     G L +IYPHSGHYRP++  +  LL FL   GV L  + VD QR  KV+RE     KV K++  +  PA ++L FL AK  AW   LFD++   A++
Sbjct:  167 RIHHTSFVGGECVQTAGIIVVAQ-GVLTTIYPHSGHYRPSESEVLVLLRFLHQHGVRLQDVAVDVQRFQKVSRERTHVAKVSKMENAYFWPAPDVLLFLEAKEKAWGGTLFDDIEMAAKS 285          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A2D4BS79_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS79_PYTIN)

HSP 1 Score: 102 bits (255), Expect = 1.350e-20
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELM 749
            R HH+SF AGE V+ AGM+   + G + +IYPHSGHYRP++  L  LL FL   GVD++ + VD QR  KV R+     +VRK+D      A  +L FL  KH AW   LFD+++
Sbjct:  159 RIHHTSFVAGECVQTAGMMVIKN-GVIETIYPHSGHYRPSEHELLVLLRFLVAQGVDMSQVRVDVQRIQKVFRDTVNGTRVRKIDNAHFWDAYRVLFFLEQKHLAWKIGLFDDIV 272          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: K3WGT1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGT1_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 9.240e-20
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQRA 758
            R HH+SF  GE V+ AGM+   D G + +IYPHSGHYRP++  L  LL+FL  +GVDL  + VD QR  KV R       +RK+D      A  +L++L  KH++W   LFD+L++ A
Sbjct:  155 RIHHTSFVGGECVQTAGMMVIVD-GIIKTIYPHSGHYRPSEHELLVLLQFLVANGVDLRGVEVDVQRIQKVYRATVNGALIRKLDNAHFWKAYRVLNYLEHKHSSWKNGLFDDLVEIA 271          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A6G0XAP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAP7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.730e-19
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQR 755
            R HH+S   GE V+AAGM F   +G L  +YPHSGHYRP++  +  LL FL   G+ L  + VD QR  KV+RE+    KV+K D  F  P D+ L FL+AK  A    +FD + +R
Sbjct:  160 RIHHTSLVGGECVQAAGM-FVVANGELTIVYPHSGHYRPSENEVLLLLRFLHSQGIPLHNVQVDVQRIQKVSREKINGKKVKKTDCAFFWPGDKALDFLSAKELACLLHIFDSIERR 275          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A7S2KIX1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIX1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.760e-19
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVARE--------ERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDEL 746
            RFHHSSFF G+ V +AG+  TDD G L+ +YPHSGHYRP +R+LH++L +L   GV L  + VD Q+ Y ++RE          K  K++KV   +L+  D + SFL+ K    ++ +F ++
Sbjct:  168 RFHHSSFFGGKAVASAGIFITDDGGHLLKLYPHSGHYRPGERHLHRILLYLKKHGVILENIEVDLQQIYHMSRELTGTVGSDMTKTSKLKKVQNLYLLSGDTVESFLSHKRRMINSGVFRQV 289          
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Match: A0A7S2KK35_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KK35_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.180e-19
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  405 RFHHSSFFAGEFVEAAGMVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQRTYKVARE--------ERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDEL 746
            RFHHSSFF G+ V +AG+  TDD G L+ +YPHSGHYRP +R+LH++L +L   GV L  + VD Q+ Y ++RE          K  K++KV   +L+  D + SFL+ K    ++ +F ++
Sbjct:  184 RFHHSSFFGGKAVASAGIFITDDGGHLLKLYPHSGHYRPGERHLHRILLYLKKHGVILENIEVDLQQIYHMSRELTGTVGSDMTKTSKLKKVQNLYLLSGDTVESFLSHKRRMINSGVFRQV 305          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11143.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBQ8_9PHAE7.080e-2852.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DCJ4_9STRA4.700e-2350.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U6C7_9STRA6.110e-2350.85Calmodulin binding protein n=1 Tax=Nannochloropsis... [more]
A0A8K1C508_PYTOL3.540e-2148.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YJY3_9STRA1.180e-2044.17Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BS79_PYTIN1.350e-2046.09Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WGT1_GLOUD9.240e-2044.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XAP7_9STRA1.730e-1945.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2KIX1_9STRA1.760e-1941.80Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2KK35_9STRA2.180e-1941.80Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11143contigP-wetherbeei_contig11143:136..2128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000020805
Model size1388
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.55e-18
EggNOG OGs28J6G@1|root,2QS9S@2759|Eukaryota,1MAJR@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000860.1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185899.3936281-UTR-P-wetherbeei_contig11143:135..5901683185899.3936281-UTR-P-wetherbeei_contig11143:135..590Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11143 136..590 +
1683185899.4291174-UTR-P-wetherbeei_contig11143:1570..21281683185899.4291174-UTR-P-wetherbeei_contig11143:1570..2128Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11143 1571..2128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185899.4027882-CDS-P-wetherbeei_contig11143:590..6461683185899.4027882-CDS-P-wetherbeei_contig11143:590..646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11143 591..646 +
1683185899.4116483-CDS-P-wetherbeei_contig11143:1056..11591683185899.4116483-CDS-P-wetherbeei_contig11143:1056..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11143 1057..1159 +
1683185899.420728-CDS-P-wetherbeei_contig11143:1354..15701683185899.420728-CDS-P-wetherbeei_contig11143:1354..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11143 1355..1570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11143.2.2prot_P-wetherbeei_contig11143.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11143 591..1570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11143.2.2

>prot_P-wetherbeei_contig11143.2.2 ID=prot_P-wetherbeei_contig11143.2.2|Name=mRNA_P-wetherbeei_contig11143.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MVFTDDDGRLMSIYPHSGHYRPTDRNLHKLLEFLAVSGVDLTLLLVDAQR
TYKVAREERKEGKVRKVDTPFLVPADELLSFLAAKHAAWDALLFDELMQR
ARAWAHRLGWVGGHDRRVSFAWST*
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mRNA from alignment at P-wetherbeei_contig11143:136..2128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11143.2.2 ID=mRNA_P-wetherbeei_contig11143.2.2|Name=mRNA_P-wetherbeei_contig11143.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1993bp|location=Sequence derived from alignment at P-wetherbeei_contig11143:136..2128+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTACGGACGGGCTCGGAAGGTTGGATTTTTGTGCTAAGGGACGGAAA CCTTTACGCACGTCCCAAGCAGACCACTTCACCAAGGTGCGGCGGTTAAT GGGGCTTTCTTGAGTATATTCGACGGTACCGCATAGTAGAATTCTATTTC ATATCTCTCCTCCCTGTCAAAAGACATAGTTTTTCTGGATCTTTGGTGTT TCGTAGCCAAAACTCGTTCGTTTGACATATGACACCGGAGCGAGTCACGT CTCAGAGCTCCTTCCTTTTTCTTCATTCCCATGGCTCTTACTACTCTCTT TCCAAGCTGACCTCCTCAATTTTCGCCGAGGTGCCGCCTCCCTAAAACCT TGAAACCCGTTACTTAATATTGAATCTCTTCTCGCACTTTGCGATGGCGG TTTCAGGTTCCACCACAGTTCTTTTTTTGCGGGCGAATTCGTCGAGGCGG CCGGCATGGTTTTCACCGACGACGATGGGCGCCTAATGAGCATTTACCCG CACAGCGGCCAGTGAGGAGCCCCGCCCGGACTTTGTGGCTCGGTTTTGGG TCGGTATTGGTTGAAACGAACCTTCTGGTGTCGACAAGGGGGGGCAGCGA AGGGGGGGCAGCGCAGGCGGTAATGTTGCCCGGCGCCGGAGCGTCTTAGG CTGCTGCGTTCCGCCTGGATTACTGGAGTCGCGATTTGCGGTCTGAAACC TTGCGATTGGGAAAGCAGGCTGCGGCCGCTCGCGCTCTATTAACAATGCC GCCTTCTTGGGTCGAACCGCAAGAAAACGACATGCTTGTCCGTCTTTCTG TATTTCGCCGCTTTTATTTTAGCCGGGCTTGCACCTCGCCTTCAAAGGTT ACTAAGCATTGCAAACATTCACGTTAACTCGCTGCGTCGGCCGCTCGGCA TGGCTTCTTCCGGCGGTGCAGCTACCGACCAACAGATCGGAATTTGCACA AGCTGTTGGAATTTCTGGCCGTGTCCGGGGTGGACTTGACGCTGTTGCTG GTCGACGCGCAACGGACTTACAAGGTAAGACTTCCGTTCCTTTCTCCTTC TGTCTTTAAACGTTTCGCTGTAAACCGGGGGGCTCACTCTGCCGTTGCCA GCGGCTTTCGCCTTGTGCATGGCCGGCCGGTATCATTCTCCCCCCTATGT CTGCACCCCTCCCGTCATCAGCTTTTCGCGCTGCTCATCATGTTTTCCTT TTGTAAAAACTTTATCTAGGTGGCTCGCGAGGAGCGCAAGGAGGGCAAGG TCCGCAAGGTGGACACGCCGTTCCTCGTGCCGGCAGACGAGCTGCTGAGC TTCCTCGCGGCCAAGCACGCTGCCTGGGACGCCCTCCTGTTCGATGAGCT TATGCAGCGGGCGCGGGCGTGGGCGCACCGCCTCGGATGGGTCGGCGGCC ACGACCGCCGCGTCAGCTTCGCGTGGTCCACATGACTGCTGCCGGCTGCT GGCTGCTGCAGCTGCTGCCGCCGCCGCTGGAGGCCGGTCAGTGGCGGTGG TGGCGGCTGCTGTTGCCGCTTGGCTGGAAGCCCGCCAATGGCGGCGGCGG TGGCAATGACGTTGTCGGACGCAGGCAGGTCAGGCTAATGAGTCTGGGCG CTGGCGGCCGATTGCGGTGAAGAATGTATGGAGAAATTCGGTGGTAGACC CTGTTGAGCGTCGAATTCCGGCGCCAATGAAGCTGCTCCGGGCGACATTC CATGTCTCTGCATATGTAGGCGATTTTAGTCCAACGCCGCTGGCGAGTGC TGTCGGTGGCTAAGGGGCAGAGGACCTCGGCTTTCATCTTGTTTATAGAT AGCGATGACTTGTCGATGATAAAACTGGGGTGTATTGTGCGTCGTGAATG GTAAGACGCGCAGAGAGCGACGTCTGGGATCGTGTTGGTTGAGAGAAGAA AGACCCTAGAGTCCGGACATATGTTGCAAGAAATTCTTACAGTAACCTTT ACGTAAAAAACGAGTTCTCCTCTACCACGTGGTCACCCAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11143:136..2128+

>mRNA_P-wetherbeei_contig11143.2.2 ID=mRNA_P-wetherbeei_contig11143.2.2|Name=mRNA_P-wetherbeei_contig11143.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig11143:136..2128+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTTCACCGACGACGATGGGCGCCTAATGAGCATTTACCCGCACAG
CGGCCACTACCGACCAACAGATCGGAATTTGCACAAGCTGTTGGAATTTC
TGGCCGTGTCCGGGGTGGACTTGACGCTGTTGCTGGTCGACGCGCAACGG
ACTTACAAGGTGGCTCGCGAGGAGCGCAAGGAGGGCAAGGTCCGCAAGGT
GGACACGCCGTTCCTCGTGCCGGCAGACGAGCTGCTGAGCTTCCTCGCGG
CCAAGCACGCTGCCTGGGACGCCCTCCTGTTCGATGAGCTTATGCAGCGG
GCGCGGGCGTGGGCGCACCGCCTCGGATGGGTCGGCGGCCACGACCGCCG
CGTCAGCTTCGCGTGGTCCACATGA
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