mRNA_P-wetherbeei_contig11099.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11099.1.1
Unique NamemRNA_P-wetherbeei_contig11099.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: A0A3D0CX13_9CHLR (Formate transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0CX13_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   25 EEAKKPGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVVSHLLVDS-PRPLREICLALSY 234
            EE +KP   ILE +  E   E +R   GL ++ LSAGLD+GFS+FL+AV+  L+     RP+ EI +A  Y
Sbjct:    9 EEPRKPARRILEQEIMEGLGEIERSTSGLFMAGLSAGLDVGFSLFLMAVMLTLVTGMLARPIVEILVANMY 79
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: A0A5C6CDI5_9BACT (Inner membrane protein YfdC n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CDI5_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 2.940e-5
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   28 EAKKPGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVVSHLLVDS-PRPLREICLALSY 234
            E KKP  +I+  + +EA A F R  + L  S LSAGL++GFS+FL+AV+  LL D  P+ + ++ +A  Y
Sbjct:   21 EPKKPSQQIMRHELKEALAAFQRSSVRLFFSGLSAGLEIGFSLFLMAVMQTLLQDDLPKSVVDLLVANMY 90
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: A0A830GJX3_9EURY (Formate dehydrogenase n=2 Tax=Haloarculaceae TaxID=1963268 RepID=A0A830GJX3_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 3.950e-5
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   40 PGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVV 174
            P  +IL++Q     +E  RPV GLSLSALSAGLD+GF   L+AVV
Sbjct:   15 PSEDILDIQIERGLSELRRPVTGLSLSALSAGLDIGFGPLLMAVV 59
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: A0A8J8C6V5_9EURY (Formate/nitrite transporter family protein n=3 Tax=Halomicroarcula TaxID=1427149 RepID=A0A8J8C6V5_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 5.430e-5
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   43 GTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVV 174
            G +ILE+Q R   +E +RP  GLSLSALSAGLD+GF   L+ V+
Sbjct:   17 GEDILELQIRRGLSELNRPTSGLSLSALSAGLDIGFGPLLMGVI 60
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: A0A8J7YD11_9EURY (Formate/nitrite transporter family protein n=2 Tax=Halomicroarcula salinisoli TaxID=2487746 RepID=A0A8J7YD11_9EURY)

HSP 1 Score: 48.9 bits (115), Expect = 7.350e-5
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   25 EEAKKPGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVV 174
            EEA+  G +IL++Q R   +E  RP  GLSLSALSAGLD+GF   L+ V+
Sbjct:    4 EEAQAEGEDILDIQIRRGLSELWRPTSGLSLSALSAGLDVGFGPLLMGVI 53
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BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Match: UPI000AC04A3C (formate/nitrite transporter family protein n=1 Tax=Haladaptatus cibarius TaxID=453847 RepID=UPI000AC04A3C)

HSP 1 Score: 48.9 bits (115), Expect = 7.400e-5
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    4 SELEESPEEAKKPGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGFSMFLVAVVSHLLVDS-PRPLREICLALSY 234
            +E+E+ P + +KP   IL  Q  E   E +RP  GL LSALSAGLD+GF   L+ V++ L+  S   PL  + +A +Y
Sbjct:    9 AEIEDRPTDQQKPRESILASQIDEGLNELERPTNGLFLSALSAGLDIGFGPLLMVVLATLVGSSWGTPLTTLLIANAY 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11099.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D0CX13_9CHLR1.120e-545.07Formate transporter n=1 Tax=Chloroflexi bacterium ... [more]
A0A5C6CDI5_9BACT2.940e-542.86Inner membrane protein YfdC n=1 Tax=Novipirellula ... [more]
A0A830GJX3_9EURY3.950e-557.78Formate dehydrogenase n=2 Tax=Haloarculaceae TaxID... [more]
A0A8J8C6V5_9EURY5.430e-556.82Formate/nitrite transporter family protein n=3 Tax... [more]
A0A8J7YD11_9EURY7.350e-554.00Formate/nitrite transporter family protein n=2 Tax... [more]
UPI000AC04A3C7.400e-542.31formate/nitrite transporter family protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11099contigP-wetherbeei_contig11099:1977..2210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1455608.JDTH01000001_gene3257
PFAMsForm_Nir_trans
Model size234
Max annot lvl183963|Halobacteria
KEGG koko:K21990
KEGG TC1.A.16.4
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.21e-05
EggNOG OGsCOG2116@1|root,arCOG03454@2157|Archaea,2XTKF@28890|Euryarchaeota,23TA8@183963|Halobacteria
DescriptionCOG2116 Formate nitrite family of transporters
Cds size234
COG categoryP
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185897.4084263-CDS-P-wetherbeei_contig11099:1976..22101683185897.4084263-CDS-P-wetherbeei_contig11099:1976..2210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11099 1977..2210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11099.1.1prot_P-wetherbeei_contig11099.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11099 1977..2210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11099.1.1

>prot_P-wetherbeei_contig11099.1.1 ID=prot_P-wetherbeei_contig11099.1.1|Name=mRNA_P-wetherbeei_contig11099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MSELEESPEEAKKPGTEILEVQKREANAEFDRPVLGLSLSALSAGLDLGF
SMFLVAVVSHLLVDSPRPLREICLALSY
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mRNA from alignment at P-wetherbeei_contig11099:1977..2210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11099.1.1 ID=mRNA_P-wetherbeei_contig11099.1.1|Name=mRNA_P-wetherbeei_contig11099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig11099:1977..2210+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAACTCGAAGAAAGCCCGGAAGAAGCCAAAAAGCCAGGCACGGA
GATTCTCGAAGTGCAAAAACGAGAGGCTAACGCTGAGTTTGACAGGCCTG
TTCTGGGGCTCAGTCTTTCGGCCCTTTCGGCCGGCCTCGATTTGGGCTTT
TCGATGTTTTTGGTCGCGGTCGTTTCCCACTTACTCGTCGACTCTCCTCG
CCCGCTTCGTGAGATCTGTCTGGCTCTCAGTTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11099:1977..2210+

>mRNA_P-wetherbeei_contig11099.1.1 ID=mRNA_P-wetherbeei_contig11099.1.1|Name=mRNA_P-wetherbeei_contig11099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig11099:1977..2210+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAACTCGAAGAAAGCCCGGAAGAAGCCAAAAAGCCAGGCACGGA
GATTCTCGAAGTGCAAAAACGAGAGGCTAACGCTGAGTTTGACAGGCCTG
TTCTGGGGCTCAGTCTTTCGGCCCTTTCGGCCGGCCTCGATTTGGGCTTT
TCGATGTTTTTGGTCGCGGTCGTTTCCCACTTACTCGTCGACTCTCCTCG
CCCGCTTCGTGAGATCTGTCTGGCTCTCAGTTAT
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