mRNA_P-wetherbeei_contig11087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: D7FXE1_ECTSI (WD repeat-containing protein 60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE1_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.550e-41 Identity = 193/602 (32.06%), Postives = 253/602 (42.03%), Query Frame = 1 Query: 190 GAAAPGDVAPGKYSYAGGASSSSAAVGSERPRASSFKLADAKGLERAMAAAGPRGRRARELRAIVQLEVVRFSSFRQPPSTPYERYARALRAAAPVARQVAIQSGEEDRSVEAQTEEVLQADKEVQCHLGHDDTALENMMRHVQQRRGHGNXXXXXXXXDSSCXXXXXXXXXXXXXSKREGDAKGEEDGV--DAALSVGDQPGGIGXXXXXXXXXXXXXXXGKVS-----------LRLGRFLQRAGPLLETLCMENL--QATRGHGGG-----ADGKNGD------GAAAATALFTTGQPWRELGADVPPTDPIRRLLSARNVSAITAFPGRAGLVATAHVLRCVDDCGGAVVGKPARNAAAGAVAAAAE-EKIAASGAVASNGKKAA---------------------PLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLS---GLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----RFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 G A VA GK+S +SA V R + S FK+ADAK L RA+A PR R R +R +LEV F Q P P + Y R LR + RQ Q+ ++ RSVE QT+E++Q+ KEVQ HLGHDDTALEN+MR ++ R + G A G+ + G PG G+VS LRLG+FL++A ++ETLC ENL + GG A G++ D GA + A G+ W E+ +A A T G + TA R G V G+ A G+ E K+ S V ++ + +L G VVCVW GA P + GEG + L A V++ GT EG +LLWDL E S A++ L L CG+R PTY TAGG G GLS AG F++ASLDDRG V++WLA V D+ GSQ+DLGL PGGR+RLA ++AL Sbjct: 334 GGEASAAVAKGKFSV-----DASADVKRSR-KGSGFKMADAKALTRALAKGDPRAERVRAIRGASRLEVESVRLFDQVPILPIDLYHRRLRGQPALIRQAGTQTNDDARSVEGQTDEIVQSHKEVQFHLGHDDTALENLMRRLRSNRRPPERHQAKGEEGGQTQQRTVVDGGEDVPASGPGSATTTFKGIYNGNGMVAGTDPGEQ-EYPAPRYGTDFDGSSGRVSSAGGSDTLPPPLRLGKFLRQASVVMETLCEENLLHAPVKRRGGSHPLDPARGEHEDAVGRERGALFSGAGGREGEGWEEVXXXXXXXXXXXXXATA----AATEDTGSS----TAEEKRRQGGDEGRVRGRGAGALLEGSEVVGVEFSKVKRSMLVTAHARPVGRRXXXXXXXXXXXXXXTDEREAVLEGCGVVCVWNTENVQGA-PVSVLCGEGLFSCLCLARHQAHVVITGTEEGCLLLWDLRETASEGRAAESRELGLHCGIRAPTYVTAGGDGRGEDGGLSKAGCGHSSKVVSVVAIPSPTGGVGMDGGGGGIGGMISLGDACSFQVASLDDRGTVSIWLASEVP-RGDEGGSQTDLGLSPGGRVRLALSKAL 918
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A835Z6D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D0_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.990e-15 Identity = 194/581 (33.39%), Postives = 249/581 (42.86%), Query Frame = 1 Query: 214 APGKYSYAGGASSSSAAVGSERPRASSFKLADAKGLERAMAAAGPRGRR------ARELRAIVQLEVVRFSSFRQPPSTPYERYARALRAAAPVARQVAI--------QSGEEDRSVEAQTEEVLQADKEVQCHLGHDDTALENMMRHVQQRRGHGNXXXXXXXXDSSCXXXXXXXXXXXXXSKREGDAKGEEDGVDAALSVGDQ--PGGIGXXXXXXXXXXXXXXXGKV----SLRLGRFLQRAGPLLETLCMENLQATRGHGGGADGK-----NGDGAAAATALFTTGQP--WRELGA----------DVPPTDP-IRRLLSARNVSAITAFPGRAGLVATAHVLRCVDDCGGAVVGKPARNAAAGAVAAAAEEKIAASGAVASNGKKAAPLLPGRSVVCVWEAGRAVGAAP-AGLAVGEGRLTALA-GVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGS--QSDLGLGPGGRMRLAATRAL 1830 A G+ AG + A + +P ++LA+AK + + + A RG R AR A +L RF + P P ERY LR+ Q+ ++DR V QTE AD E Q H+G DDTALENM+ + R XXXXX S XXXXXX GE +GV GD+ PG + XXX RL FL+ P++E LC+EN+ + G A+ + G+ AA F + W LGA D +P +R L+ + +A+ R L+A A+ AR+A AV G +AAPL +A R AAP A + V EG T + G + + G A+G V LWDL P CGLR PTY TA S G + A XXXXXXXXXXXXXXXXXXXXXX ASLDDRG+V +WLAM V+ DD GS Q DLGL PGG +RLA +R + Sbjct: 163 AKGRKGGAGEGAGPKGAALAAQPATQQYRLAEAKAVSQRLGGAAARGARCGXXXXARSAAAAARLSTERFVLYSAAPVGPLERYHARLRSGGXXXXXXXXXXXXXXXXQTRDDDRDVGTQTETARAADAEAQFHMGSDDTALENMLARARARXXXXXXXXXXHRRQGSDPGVTLTAXXXXXXXXT-----GEGEGV---YEHGDREAPGTVDAAEAEERAAQLRXXXXXXXXXGGARLAHFLRSVAPVVEALCVENIALSGGSAALAEAEARARDEGERDRAAGRAFASEATTSWERLGAAXXXXXXXXXDDWAVEPWLRTALAGASAAALAYSAARPPLLAVAY----------------ARSAXX-------XXXXXXXXAVCVWGARAAPLAGDT------DASRP--AAPLAAVLVAEGAPTCVCWGPAAAPHLCLAGAADGVVALWDLRTPCGGXXXXXXXERPA-CGLRRPTYATAPRSAAGGHASA------VAXXXXXXXXXXXXXXXXXXXXXXGLFRAAATAFASLDDRGVVIVWLAMDVT---DDGGSAQQQDLGLAPGGSVRLAHSRTV 694
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: UPI001C0A2821 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI001C0A2821) HSP 1 Score: 69.7 bits (169), Expect = 1.240e-8 Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 1 Query: 1252 ASNGKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 A + +A L +S++CVW + P + V E + A ++ GT+ G+V+LWDL EP S H G T LR+PT++T + LSG+G F+LASLD++G++ +W+ + + + DAGSQ+DLGL PGG+++L + +L Sbjct: 647 APSSMSSAIRLDSQSIICVWNIWEP--SRPQKILVYESEVCCCCLSPGKAMLVFAGTSVGSVVLWDLREPSSSHYSLTIGESDWT--LRYPTFSTD-----AVLSGSGHLSAVQSVEPVSVPVSEGLRPELPLLANQEESLGLSFQLASLDEKGVLNLWVVVELP-KSSDAGSQTDLGLRPGGKVKLLHSSSL 829
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: UPI0007043B69 (LOW QUALITY PROTEIN: WD repeat-containing protein 60 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0007043B69) HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8 Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 1 Query: 1264 KKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 K AP L GR V+CVW+ + G P + + E ++T A ++ GTA G+VL+WDL E H G TC R PT++T G L+ +S F +ASLD+ G++ +W+ + + AD AGS SDLGL PGGR++L + A+ Sbjct: 721 KAFAPSLDGRYVLCVWDIWQPSG--PQKVLISESKVTCCCFSPSKASLLFAGTAHGSVLVWDLREDSRLHRYV--GPSDCTCTFRTPTFSTDGT--LTSVS----HRSRLQAVEPVPTSVYRKQSCVLSPFSTQEEMGLSFHIASLDESGVLNVWVVVELP-KADTAGSVSDLGLLPGGRIKLVHSAAV 898
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A8C4ALF6_9TELE (WD repeat domain 60 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ALF6_9TELE) HSP 1 Score: 66.6 bits (161), Expect = 1.130e-7 Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 1 Query: 1405 VIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812 +++ GTA G+V+LWDL EP S H G LR+PT++T + LSG+G F+LASLD+ GL+ +W+ + + +AGSQ+DLGL PGG+++L Sbjct: 727 LVIAGTAVGSVVLWDLREPSSLHHKLSVGESEWI--LRYPTFSTD-----AILSGSGHLSPVRSVEPVTASTSEVLRSELPVMTNYKESLGLSFQLASLDENGLLNLWVVVELP-KVSEAGSQTDLGLWPGGKVKL 854
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A5N3UZU5_MUNMU (Uncharacterized protein (Fragment) n=4 Tax=Pecora TaxID=35500 RepID=A0A5N3UZU5_MUNMU) HSP 1 Score: 65.5 bits (158), Expect = 2.360e-7 Identity = 59/190 (31.05%), Postives = 83/190 (43.68%), Query Frame = 1 Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 GK APLL R V+CVW+ + G P + V E ++T V A ++ GT G+V++WDL E H S T R PT++T G L F +ASLD+ GL+ +W+ + + AD AGS SDLGL PGGR++L + A+ Sbjct: 452 GKALAPLLDHRHVLCVWDVRQPSG--PQKVLVCESKVTCCCLSPVKAFLLFAGTVHGSVVVWDLREDPRIHLRVTLSGCSWT--FRTPTFSTDGV-----LMSVNHRSPLQAIEPITGSVCKRQSCVLSPFSTQEETAGLSFHVASLDESGLLNVWVVVELQ-KADAAGSISDLGLIPGGRIKLVHSAAI 631
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A3Q1LZI1_BOVIN (Dynein 2 intermediate chain 1 n=41 Tax=Pecora TaxID=35500 RepID=A0A3Q1LZI1_BOVIN) HSP 1 Score: 65.1 bits (157), Expect = 3.420e-7 Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 1 Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 GK +APLL R V+CVW+ + + P + V E ++T V A ++ GT G+V++WDL E H S T R PT++T G L+ F +ASLD+ GL+ +W+ + + AD AGS SDLGL PGGR++L + A+ Sbjct: 712 GKASAPLLEHRYVLCVWDVRQP--SEPQKVLVCESKVTCCCFSPVKACLLFAGTVHGSVVVWDLREDPRIHLRVTLSGCSWT--FRTPTFSTDGV-----LTSVNHCSPLQAIEPVTGSVCKRQSCVLSPFSTQEETAGLSFHIASLDESGLLNVWVVVELQ-KADVAGSISDLGLIPGGRIKLVHSAAI 891
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A452F4H3_CAPHI (Uncharacterized protein n=6 Tax=Caprinae TaxID=9963 RepID=A0A452F4H3_CAPHI) HSP 1 Score: 64.7 bits (156), Expect = 4.450e-7 Identity = 59/190 (31.05%), Postives = 84/190 (44.21%), Query Frame = 1 Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830 GK PLL R V+CVW+ + G P + V E ++T V A ++ GT G+V++WDL E H S T R PT++T G L+ F +ASLD+ GL+ +W+ + + AD AGS SDLGL PGGR++LA + A+ Sbjct: 675 GKALVPLLDHRHVLCVWDVRQPSG--PQKVLVCESKVTCCCFSPVKACLLFAGTLHGSVVVWDLREDLRIHLRVTLSGCSWT--FRTPTFSTDGV-----LASVNHRSPLQAIEPIAGSVCKRQSCVLSPFSTQEEMAGLSFLVASLDESGLLNVWVVVELQ-KADVAGSISDLGLIPGGRIKLAHSAAI 854
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A553RNX9_9TELE (Uncharacterized protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RNX9_9TELE) HSP 1 Score: 63.9 bits (154), Expect = 4.890e-7 Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1 Query: 1405 VIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812 ++ GTA G+V++WDL EP H + G + T LR+PT++T + LSG G F+L SLD+ G +T+W+ + ++ DD+GSQ+DLGL PGG+++L Sbjct: 166 LVFAGTAVGSVVVWDLREPSGSHFSLEIGKETWT--LRYPTFSTD-----AVLSGVGHFSPVVSIEPVLSSVEGSESTLNADKDESLGLS---FQLGSLDENGFLTLWVVVELT-KGDDSGSQTDLGLRPGGKVKL 290
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A3B1IRJ2_ASTMX (WD repeat domain 60 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IRJ2_ASTMX) HSP 1 Score: 64.3 bits (155), Expect = 4.980e-7 Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 1 Query: 1282 LPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812 L ++++CVW +AP + + E + A ++ GTA G+V+LWDL E HS A T LR+PT++T + L+GAG F+L SLD+ GL+ +W+ + ADD+GSQ+DLGL PGG+++L Sbjct: 335 LESKTLICVWNVWEP--SAPQRILIYEAEVRCCCFSPGKATLVFAGTAVGSVVLWDLREHSGAHSSLSADGEEFT--LRYPTFSTD-----AVLAGAGHFSSVVSVEPVVVNVESGIRGSFLEDQEESLGLL--FQLGSLDENGLLNLWVVTELP-KADDSGSQTDLGLRPGGKVKL 499 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11087.1.1 >prot_P-wetherbeei_contig11087.1.1 ID=prot_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=610bp MPLLQSLRESLQQENSAALERSQQRPTSAAADEKADSGAASAGRSAKGAKback to top mRNA from alignment at P-wetherbeei_contig11087:37..2127- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11087.1.1 ID=mRNA_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2091bp|location=Sequence derived from alignment at P-wetherbeei_contig11087:37..2127- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11087:37..2127- >mRNA_P-wetherbeei_contig11087.1.1 ID=mRNA_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1830bp|location=Sequence derived from alignment at P-wetherbeei_contig11087:37..2127- (Phaeothamnion wetherbeei SAG_119_79)back to top |