mRNA_P-wetherbeei_contig11087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11087.1.1
Unique NamemRNA_P-wetherbeei_contig11087.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: D7FXE1_ECTSI (WD repeat-containing protein 60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE1_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.550e-41
Identity = 193/602 (32.06%), Postives = 253/602 (42.03%), Query Frame = 1
Query:  190 GAAAPGDVAPGKYSYAGGASSSSAAVGSERPRASSFKLADAKGLERAMAAAGPRGRRARELRAIVQLEVVRFSSFRQPPSTPYERYARALRAAAPVARQVAIQSGEEDRSVEAQTEEVLQADKEVQCHLGHDDTALENMMRHVQQRRGHGNXXXXXXXXDSSCXXXXXXXXXXXXXSKREGDAKGEEDGV--DAALSVGDQPGGIGXXXXXXXXXXXXXXXGKVS-----------LRLGRFLQRAGPLLETLCMENL--QATRGHGGG-----ADGKNGD------GAAAATALFTTGQPWRELGADVPPTDPIRRLLSARNVSAITAFPGRAGLVATAHVLRCVDDCGGAVVGKPARNAAAGAVAAAAE-EKIAASGAVASNGKKAA---------------------PLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLS---GLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----RFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            G  A   VA GK+S       +SA V   R + S FK+ADAK L RA+A   PR  R R +R   +LEV     F Q P  P + Y R LR    + RQ   Q+ ++ RSVE QT+E++Q+ KEVQ HLGHDDTALEN+MR ++  R                             +   G A     G+     +  G  PG                  G+VS           LRLG+FL++A  ++ETLC ENL     +  GG      A G++ D      GA  + A    G+ W E+              +A    A T   G +    TA   R      G V G+ A     G+     E  K+  S  V ++ +                         +L G  VVCVW      GA P  +  GEG  + L      A V++ GT EG +LLWDL E  S    A++  L L CG+R PTY TAGG G     GLS AG                                        F++ASLDDRG V++WLA  V    D+ GSQ+DLGL PGGR+RLA ++AL
Sbjct:  334 GGEASAAVAKGKFSV-----DASADVKRSR-KGSGFKMADAKALTRALAKGDPRAERVRAIRGASRLEVESVRLFDQVPILPIDLYHRRLRGQPALIRQAGTQTNDDARSVEGQTDEIVQSHKEVQFHLGHDDTALENLMRRLRSNRRPPERHQAKGEEGGQTQQRTVVDGGEDVPASGPGSATTTFKGIYNGNGMVAGTDPGEQ-EYPAPRYGTDFDGSSGRVSSAGGSDTLPPPLRLGKFLRQASVVMETLCEENLLHAPVKRRGGSHPLDPARGEHEDAVGRERGALFSGAGGREGEGWEEVXXXXXXXXXXXXXATA----AATEDTGSS----TAEEKRRQGGDEGRVRGRGAGALLEGSEVVGVEFSKVKRSMLVTAHARPVGRRXXXXXXXXXXXXXXTDEREAVLEGCGVVCVWNTENVQGA-PVSVLCGEGLFSCLCLARHQAHVVITGTEEGCLLLWDLRETASEGRAAESRELGLHCGIRAPTYVTAGGDGRGEDGGLSKAGCGHSSKVVSVVAIPSPTGGVGMDGGGGGIGGMISLGDACSFQVASLDDRGTVSIWLASEVP-RGDEGGSQTDLGLSPGGRVRLALSKAL 918          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A835Z6D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.990e-15
Identity = 194/581 (33.39%), Postives = 249/581 (42.86%), Query Frame = 1
Query:  214 APGKYSYAGGASSSSAAVGSERPRASSFKLADAKGLERAMAAAGPRGRR------ARELRAIVQLEVVRFSSFRQPPSTPYERYARALRAAAPVARQVAI--------QSGEEDRSVEAQTEEVLQADKEVQCHLGHDDTALENMMRHVQQRRGHGNXXXXXXXXDSSCXXXXXXXXXXXXXSKREGDAKGEEDGVDAALSVGDQ--PGGIGXXXXXXXXXXXXXXXGKV----SLRLGRFLQRAGPLLETLCMENLQATRGHGGGADGK-----NGDGAAAATALFTTGQP--WRELGA----------DVPPTDP-IRRLLSARNVSAITAFPGRAGLVATAHVLRCVDDCGGAVVGKPARNAAAGAVAAAAEEKIAASGAVASNGKKAAPLLPGRSVVCVWEAGRAVGAAP-AGLAVGEGRLTALA-GVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGS--QSDLGLGPGGRMRLAATRAL 1830
            A G+   AG  +    A  + +P    ++LA+AK + + +  A  RG R      AR   A  +L   RF  +   P  P ERY   LR+                  Q+ ++DR V  QTE    AD E Q H+G DDTALENM+   + R     XXXXX     S        XXXXXX        GE +GV      GD+  PG +             XXX         RL  FL+   P++E LC+EN+  + G    A+ +      G+   AA   F +     W  LGA          D    +P +R  L+  + +A+     R  L+A A+                AR+A                 AV   G +AAPL          +A R   AAP A + V EG  T +  G      + + G A+G V LWDL  P               CGLR PTY TA  S   G + A        XXXXXXXXXXXXXXXXXXXXXX          ASLDDRG+V +WLAM V+   DD GS  Q DLGL PGG +RLA +R +
Sbjct:  163 AKGRKGGAGEGAGPKGAALAAQPATQQYRLAEAKAVSQRLGGAAARGARCGXXXXARSAAAAARLSTERFVLYSAAPVGPLERYHARLRSGGXXXXXXXXXXXXXXXXQTRDDDRDVGTQTETARAADAEAQFHMGSDDTALENMLARARARXXXXXXXXXXHRRQGSDPGVTLTAXXXXXXXXT-----GEGEGV---YEHGDREAPGTVDAAEAEERAAQLRXXXXXXXXXGGARLAHFLRSVAPVVEALCVENIALSGGSAALAEAEARARDEGERDRAAGRAFASEATTSWERLGAAXXXXXXXXXDDWAVEPWLRTALAGASAAALAYSAARPPLLAVAY----------------ARSAXX-------XXXXXXXXAVCVWGARAAPLAGDT------DASRP--AAPLAAVLVAEGAPTCVCWGPAAAPHLCLAGAADGVVALWDLRTPCGGXXXXXXXERPA-CGLRRPTYATAPRSAAGGHASA------VAXXXXXXXXXXXXXXXXXXXXXXGLFRAAATAFASLDDRGVVIVWLAMDVT---DDGGSAQQQDLGLAPGGSVRLAHSRTV 694          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: UPI001C0A2821 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI001C0A2821)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-8
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 1
Query: 1252 ASNGKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            A +   +A  L  +S++CVW       + P  + V E  +         A ++  GT+ G+V+LWDL EP S H     G    T  LR+PT++T      + LSG+G                                    F+LASLD++G++ +W+ + +   + DAGSQ+DLGL PGG+++L  + +L
Sbjct:  647 APSSMSSAIRLDSQSIICVWNIWEP--SRPQKILVYESEVCCCCLSPGKAMLVFAGTSVGSVVLWDLREPSSSHYSLTIGESDWT--LRYPTFSTD-----AVLSGSGHLSAVQSVEPVSVPVSEGLRPELPLLANQEESLGLSFQLASLDEKGVLNLWVVVELP-KSSDAGSQTDLGLRPGGKVKLLHSSSL 829          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: UPI0007043B69 (LOW QUALITY PROTEIN: WD repeat-containing protein 60 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0007043B69)

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-8
Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 1
Query: 1264 KKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            K  AP L GR V+CVW+  +  G  P  + + E ++T        A ++  GTA G+VL+WDL E    H     G    TC  R PT++T G   L+ +S                                       F +ASLD+ G++ +W+ + +   AD AGS SDLGL PGGR++L  + A+
Sbjct:  721 KAFAPSLDGRYVLCVWDIWQPSG--PQKVLISESKVTCCCFSPSKASLLFAGTAHGSVLVWDLREDSRLHRYV--GPSDCTCTFRTPTFSTDGT--LTSVS----HRSRLQAVEPVPTSVYRKQSCVLSPFSTQEEMGLSFHIASLDESGVLNVWVVVELP-KADTAGSVSDLGLLPGGRIKLVHSAAV 898          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A8C4ALF6_9TELE (WD repeat domain 60 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ALF6_9TELE)

HSP 1 Score: 66.6 bits (161), Expect = 1.130e-7
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 1
Query: 1405 VIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812
            +++ GTA G+V+LWDL EP S H     G       LR+PT++T      + LSG+G                                    F+LASLD+ GL+ +W+ + +     +AGSQ+DLGL PGG+++L
Sbjct:  727 LVIAGTAVGSVVLWDLREPSSLHHKLSVGESEWI--LRYPTFSTD-----AILSGSGHLSPVRSVEPVTASTSEVLRSELPVMTNYKESLGLSFQLASLDENGLLNLWVVVELP-KVSEAGSQTDLGLWPGGKVKL 854          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A5N3UZU5_MUNMU (Uncharacterized protein (Fragment) n=4 Tax=Pecora TaxID=35500 RepID=A0A5N3UZU5_MUNMU)

HSP 1 Score: 65.5 bits (158), Expect = 2.360e-7
Identity = 59/190 (31.05%), Postives = 83/190 (43.68%), Query Frame = 1
Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            GK  APLL  R V+CVW+  +  G  P  + V E ++T      V A ++  GT  G+V++WDL E    H        S T   R PT++T G      L                                        F +ASLD+ GL+ +W+ + +   AD AGS SDLGL PGGR++L  + A+
Sbjct:  452 GKALAPLLDHRHVLCVWDVRQPSG--PQKVLVCESKVTCCCLSPVKAFLLFAGTVHGSVVVWDLREDPRIHLRVTLSGCSWT--FRTPTFSTDGV-----LMSVNHRSPLQAIEPITGSVCKRQSCVLSPFSTQEETAGLSFHVASLDESGLLNVWVVVELQ-KADAAGSISDLGLIPGGRIKLVHSAAI 631          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A3Q1LZI1_BOVIN (Dynein 2 intermediate chain 1 n=41 Tax=Pecora TaxID=35500 RepID=A0A3Q1LZI1_BOVIN)

HSP 1 Score: 65.1 bits (157), Expect = 3.420e-7
Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 1
Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            GK +APLL  R V+CVW+  +   + P  + V E ++T      V A ++  GT  G+V++WDL E    H        S T   R PT++T G      L+                                       F +ASLD+ GL+ +W+ + +   AD AGS SDLGL PGGR++L  + A+
Sbjct:  712 GKASAPLLEHRYVLCVWDVRQP--SEPQKVLVCESKVTCCCFSPVKACLLFAGTVHGSVVVWDLREDPRIHLRVTLSGCSWT--FRTPTFSTDGV-----LTSVNHCSPLQAIEPVTGSVCKRQSCVLSPFSTQEETAGLSFHIASLDESGLLNVWVVVELQ-KADVAGSISDLGLIPGGRIKLVHSAAI 891          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A452F4H3_CAPHI (Uncharacterized protein n=6 Tax=Caprinae TaxID=9963 RepID=A0A452F4H3_CAPHI)

HSP 1 Score: 64.7 bits (156), Expect = 4.450e-7
Identity = 59/190 (31.05%), Postives = 84/190 (44.21%), Query Frame = 1
Query: 1261 GKKAAPLLPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRLAATRAL 1830
            GK   PLL  R V+CVW+  +  G  P  + V E ++T      V A ++  GT  G+V++WDL E    H        S T   R PT++T G      L+                                       F +ASLD+ GL+ +W+ + +   AD AGS SDLGL PGGR++LA + A+
Sbjct:  675 GKALVPLLDHRHVLCVWDVRQPSG--PQKVLVCESKVTCCCFSPVKACLLFAGTLHGSVVVWDLREDLRIHLRVTLSGCSWT--FRTPTFSTDGV-----LASVNHRSPLQAIEPIAGSVCKRQSCVLSPFSTQEEMAGLSFLVASLDESGLLNVWVVVELQ-KADVAGSISDLGLIPGGRIKLAHSAAI 854          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A553RNX9_9TELE (Uncharacterized protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RNX9_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 4.890e-7
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 1405 VIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812
            ++  GTA G+V++WDL EP   H   + G  + T  LR+PT++T      + LSG G                                    F+L SLD+ G +T+W+ + ++   DD+GSQ+DLGL PGG+++L
Sbjct:  166 LVFAGTAVGSVVVWDLREPSGSHFSLEIGKETWT--LRYPTFSTD-----AVLSGVGHFSPVVSIEPVLSSVEGSESTLNADKDESLGLS---FQLGSLDENGFLTLWVVVELT-KGDDSGSQTDLGLRPGGKVKL 290          
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Match: A0A3B1IRJ2_ASTMX (WD repeat domain 60 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IRJ2_ASTMX)

HSP 1 Score: 64.3 bits (155), Expect = 4.980e-7
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 1
Query: 1282 LPGRSVVCVWEAGRAVGAAPAGLAVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLSLTCGLRHPTYTTAGGSGLSGLSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGGRMRL 1812
            L  ++++CVW       +AP  + + E  +         A ++  GTA G+V+LWDL E    HS   A     T  LR+PT++T      + L+GAG                                    F+L SLD+ GL+ +W+   +   ADD+GSQ+DLGL PGG+++L
Sbjct:  335 LESKTLICVWNVWEP--SAPQRILIYEAEVRCCCFSPGKATLVFAGTAVGSVVLWDLREHSGAHSSLSADGEEFT--LRYPTFSTD-----AVLAGAGHFSSVVSVEPVVVNVESGIRGSFLEDQEESLGLL--FQLGSLDENGLLNLWVVTELP-KADDSGSQTDLGLRPGGKVKL 499          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXE1_ECTSI1.550e-4132.06WD repeat-containing protein 60 n=2 Tax=Ectocarpus... [more]
A0A835Z6D0_9STRA3.990e-1533.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001C0A28211.240e-829.02cytoplasmic dynein 2 intermediate chain 1 isoform ... [more]
UPI0007043B692.200e-831.22LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]
A0A8C4ALF6_9TELE1.130e-732.35WD repeat domain 60 n=3 Tax=Denticeps clupeoides T... [more]
A0A5N3UZU5_MUNMU2.360e-731.05Uncharacterized protein (Fragment) n=4 Tax=Pecora ... [more]
A0A3Q1LZI1_BOVIN3.420e-730.53Dynein 2 intermediate chain 1 n=41 Tax=Pecora TaxI... [more]
A0A452F4H3_CAPHI4.450e-731.05Uncharacterized protein n=6 Tax=Caprinae TaxID=996... [more]
A0A553RNX9_9TELE4.890e-731.62Uncharacterized protein (Fragment) n=1 Tax=Danione... [more]
A0A3B1IRJ2_ASTMX4.980e-729.94WD repeat domain 60 n=2 Tax=Astyanax mexicanus Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11087contigP-wetherbeei_contig11087:37..2127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXE1
PFAMsWD40
Model size1830
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.54e-42
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-18_000070.1
Descriptiondynein heavy chain binding
Cds size1830
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.682066-CDS-P-wetherbeei_contig11087:36..2571683185896.682066-CDS-P-wetherbeei_contig11087:36..257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11087 37..257 -
1683185896.6909049-CDS-P-wetherbeei_contig11087:305..13741683185896.6909049-CDS-P-wetherbeei_contig11087:305..1374Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11087 306..1374 -
1683185896.7026362-CDS-P-wetherbeei_contig11087:1587..21271683185896.7026362-CDS-P-wetherbeei_contig11087:1587..2127Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11087 1588..2127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11087.1.1prot_P-wetherbeei_contig11087.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11087 37..2127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11087.1.1

>prot_P-wetherbeei_contig11087.1.1 ID=prot_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=610bp
MPLLQSLRESLQQENSAALERSQQRPTSAAADEKADSGAASAGRSAKGAK
GAKAGRSAAGTSGGAAAPGDVAPGKYSYAGGASSSSAAVGSERPRASSFK
LADAKGLERAMAAAGPRGRRARELRAIVQLEVVRFSSFRQPPSTPYERYA
RALRAAAPVARQVAIQSGEEDRSVEAQTEEVLQADKEVQCHLGHDDTALE
NMMRHVQQRRGHGNGSGGGRSADSSCNGGRGHGSGGGSDSKREGDAKGEE
DGVDAALSVGDQPGGIGVGGGGGRGGGNGGGAGKVSLRLGRFLQRAGPLL
ETLCMENLQATRGHGGGADGKNGDGAAAATALFTTGQPWRELGADVPPTD
PIRRLLSARNVSAITAFPGRAGLVATAHVLRCVDDCGGAVVGKPARNAAA
GAVAAAAEEKIAASGAVASNGKKAAPLLPGRSVVCVWEAGRAVGAAPAGL
AVGEGRLTALAGVGVGAGVIVGGTAEGTVLLWDLSEPRSRHSGADAGHLS
LTCGLRHPTYTTAGGSGLSGLSGAGGGGSAGGGSSSIIVAVVVVPNSATA
AAGNFGGGGRRFELASLDDRGLVTMWLAMAVSGAADDAGSQSDLGLGPGG
RMRLAATRAL
back to top

mRNA from alignment at P-wetherbeei_contig11087:37..2127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11087.1.1 ID=mRNA_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2091bp|location=Sequence derived from alignment at P-wetherbeei_contig11087:37..2127- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTCCTGCAGTCATTGCGGGAGTCGCTGCAGCAGGAGAATAGCGC CGCCCTCGAGCGCTCCCAGCAGCGGCCCACCTCCGCCGCCGCAGACGAAA AGGCCGACTCCGGCGCCGCCTCCGCCGGCCGGTCCGCCAAAGGCGCAAAG GGCGCCAAAGCAGGCCGCAGTGCCGCCGGTACCAGTGGTGGCGCTGCAGC CCCCGGAGATGTGGCTCCCGGCAAATACAGTTACGCCGGCGGTGCGTCAT CTTCCTCGGCGGCGGTCGGTTCCGAGCGGCCTCGGGCGTCGAGCTTCAAG CTGGCGGATGCCAAGGGGCTGGAGCGTGCCATGGCAGCGGCGGGGCCGCG GGGGCGGCGGGCGCGGGAGCTGCGAGCGATAGTGCAGCTGGAAGTGGTCC GGTTCTCGTCCTTCCGGCAGCCGCCGTCGACACCGTACGAGCGCTATGCC CGGGCGCTGCGGGCAGCGGCGCCGGTGGCGCGGCAGGTCGCGATTCAGAG CGGTGAGGAGGACCGCAGCGTTGAGGCACAGACGGAAGAGGTGAGAAAAC GACGCTGGGCAAAAGGTTTGGTAGCGCTTGGCGGCAAATCCGTGCGCTAC CGCCATGAACGAACGACCCGGCATTCCTATTTTGGGGGGGGGGGTTGTAG AAAGCTGCCTTGCAATGACCTGACGGCACACGCTCTTTTATCAATATTCT GCAATTTTTTTTGCCGCTGCATGTGGCCGGAATGGTCCCTTCACACATTA AAGGTCCTGCAAGCCGACAAAGAGGTGCAGTGCCACCTCGGCCACGACGA CACGGCGCTGGAAAACATGATGCGCCATGTGCAGCAGCGGCGGGGGCACG GCAACGGCTCCGGCGGTGGCAGATCCGCCGACAGTTCCTGCAACGGCGGT CGCGGCCATGGCAGCGGCGGCGGTAGTGACTCAAAGAGAGAGGGAGATGC CAAGGGAGAAGAGGACGGCGTGGACGCAGCGTTGTCGGTTGGCGACCAGC CCGGCGGGATTGGCGTCGGCGGCGGTGGCGGCAGAGGTGGTGGCAATGGC GGCGGCGCTGGAAAAGTCTCGCTGCGGCTCGGCCGCTTCCTGCAGCGGGC AGGACCGCTCCTGGAAACGCTCTGCATGGAGAACCTCCAAGCAACGCGCG GCCACGGCGGTGGTGCCGACGGAAAAAACGGGGACGGCGCCGCCGCCGCC ACCGCGCTCTTTACGACGGGACAGCCGTGGCGCGAGCTCGGCGCCGACGT CCCGCCAACCGACCCGATAAGACGGCTCCTCTCAGCACGCAACGTGTCAG CAATCACGGCGTTCCCCGGGCGCGCGGGCCTCGTCGCCACCGCCCATGTG CTGCGCTGCGTCGATGATTGCGGCGGCGCTGTGGTTGGCAAGCCGGCCAG AAATGCCGCTGCCGGTGCCGTCGCTGCTGCGGCAGAAGAGAAAATAGCCG CCAGCGGAGCGGTGGCATCAAATGGCAAGAAAGCAGCGCCGCTGCTGCCG GGGCGGAGCGTCGTGTGCGTCTGGGAGGCCGGGCGGGCGGTAGGCGCGGC GCCGGCGGGGCTGGCGGTTGGCGAGGGCCGCCTGACGGCGCTAGCCGGCG TCGGCGTGGGCGCCGGCGTAATTGTGGGCGGCACCGCCGAGGGGACAGTT CTCCTCTGGGACTTGTCGGAGCCGCGCTCGCGACACTCGGGCGCCGACGC GGGGCACCTCAGCCTGACGTGCGGCCTGCGGCACCCGACATATACAACCG CCGGCGGCAGCGGGCTCAGTGGCCTCAGCGGCGCCGGCGGCGGCGGCTCT GCTGGCGGCGGTAGCAGCAGTAGTGGGAACTGGGGCGCACGCGAGCGGCT GGGGCGAGAGCATGCCTCAGTCATCGTGGCGGTTGTAGTGGTTCCCAACA GCGCGACGGCGGCGGCTGGCAATTTCGGCGGCGGCGGGCGGCGCTTCGAG CTGGCGTCGCTCGACGACCGCGGACTGGTGACCATGTGGCTGGCCATGGC GGTCAGCGGCGCAGCCGACGACGCCGGCAGTCAGAGCGACCTCGGGCTCG GCCCCGGCGGCCGTATGCGCCTGGCCGCCACGCGAGCCCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11087:37..2127-

>mRNA_P-wetherbeei_contig11087.1.1 ID=mRNA_P-wetherbeei_contig11087.1.1|Name=mRNA_P-wetherbeei_contig11087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1830bp|location=Sequence derived from alignment at P-wetherbeei_contig11087:37..2127- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTCCTGCAGTCATTGCGGGAGTCGCTGCAGCAGGAGAATAGCGC
CGCCCTCGAGCGCTCCCAGCAGCGGCCCACCTCCGCCGCCGCAGACGAAA
AGGCCGACTCCGGCGCCGCCTCCGCCGGCCGGTCCGCCAAAGGCGCAAAG
GGCGCCAAAGCAGGCCGCAGTGCCGCCGGTACCAGTGGTGGCGCTGCAGC
CCCCGGAGATGTGGCTCCCGGCAAATACAGTTACGCCGGCGGTGCGTCAT
CTTCCTCGGCGGCGGTCGGTTCCGAGCGGCCTCGGGCGTCGAGCTTCAAG
CTGGCGGATGCCAAGGGGCTGGAGCGTGCCATGGCAGCGGCGGGGCCGCG
GGGGCGGCGGGCGCGGGAGCTGCGAGCGATAGTGCAGCTGGAAGTGGTCC
GGTTCTCGTCCTTCCGGCAGCCGCCGTCGACACCGTACGAGCGCTATGCC
CGGGCGCTGCGGGCAGCGGCGCCGGTGGCGCGGCAGGTCGCGATTCAGAG
CGGTGAGGAGGACCGCAGCGTTGAGGCACAGACGGAAGAGGTCCTGCAAG
CCGACAAAGAGGTGCAGTGCCACCTCGGCCACGACGACACGGCGCTGGAA
AACATGATGCGCCATGTGCAGCAGCGGCGGGGGCACGGCAACGGCTCCGG
CGGTGGCAGATCCGCCGACAGTTCCTGCAACGGCGGTCGCGGCCATGGCA
GCGGCGGCGGTAGTGACTCAAAGAGAGAGGGAGATGCCAAGGGAGAAGAG
GACGGCGTGGACGCAGCGTTGTCGGTTGGCGACCAGCCCGGCGGGATTGG
CGTCGGCGGCGGTGGCGGCAGAGGTGGTGGCAATGGCGGCGGCGCTGGAA
AAGTCTCGCTGCGGCTCGGCCGCTTCCTGCAGCGGGCAGGACCGCTCCTG
GAAACGCTCTGCATGGAGAACCTCCAAGCAACGCGCGGCCACGGCGGTGG
TGCCGACGGAAAAAACGGGGACGGCGCCGCCGCCGCCACCGCGCTCTTTA
CGACGGGACAGCCGTGGCGCGAGCTCGGCGCCGACGTCCCGCCAACCGAC
CCGATAAGACGGCTCCTCTCAGCACGCAACGTGTCAGCAATCACGGCGTT
CCCCGGGCGCGCGGGCCTCGTCGCCACCGCCCATGTGCTGCGCTGCGTCG
ATGATTGCGGCGGCGCTGTGGTTGGCAAGCCGGCCAGAAATGCCGCTGCC
GGTGCCGTCGCTGCTGCGGCAGAAGAGAAAATAGCCGCCAGCGGAGCGGT
GGCATCAAATGGCAAGAAAGCAGCGCCGCTGCTGCCGGGGCGGAGCGTCG
TGTGCGTCTGGGAGGCCGGGCGGGCGGTAGGCGCGGCGCCGGCGGGGCTG
GCGGTTGGCGAGGGCCGCCTGACGGCGCTAGCCGGCGTCGGCGTGGGCGC
CGGCGTAATTGTGGGCGGCACCGCCGAGGGGACAGTTCTCCTCTGGGACT
TGTCGGAGCCGCGCTCGCGACACTCGGGCGCCGACGCGGGGCACCTCAGC
CTGACGTGCGGCCTGCGGCACCCGACATATACAACCGCCGGCGGCAGCGG
GCTCAGTGGCCTCAGCGGCGCCGGCGGCGGCGGCTCTGCTGGCGGCGGTA
GCAGCAGTATCATCGTGGCGGTTGTAGTGGTTCCCAACAGCGCGACGGCG
GCGGCTGGCAATTTCGGCGGCGGCGGGCGGCGCTTCGAGCTGGCGTCGCT
CGACGACCGCGGACTGGTGACCATGTGGCTGGCCATGGCGGTCAGCGGCG
CAGCCGACGACGCCGGCAGTCAGAGCGACCTCGGGCTCGGCCCCGGCGGC
CGTATGCGCCTGGCCGCCACGCGAGCCCTG
back to top