mRNA_P-wetherbeei_contig1108.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1108.3.1
Unique NamemRNA_P-wetherbeei_contig1108.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1108.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1108contigP-wetherbeei_contig1108:5212..5901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size658
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.4178617-UTR-P-wetherbeei_contig1108:5211..54181683185896.4178617-UTR-P-wetherbeei_contig1108:5211..5418Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1108 5212..5418 -
1683185896.4403787-UTR-P-wetherbeei_contig1108:5792..59011683185896.4403787-UTR-P-wetherbeei_contig1108:5792..5901Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1108 5793..5901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.4258034-CDS-P-wetherbeei_contig1108:5418..54391683185896.4258034-CDS-P-wetherbeei_contig1108:5418..5439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1108 5419..5439 -
1683185896.4332042-CDS-P-wetherbeei_contig1108:5471..57921683185896.4332042-CDS-P-wetherbeei_contig1108:5471..5792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1108 5472..5792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1108.3.1prot_P-wetherbeei_contig1108.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1108 5419..5792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1108.3.1

>prot_P-wetherbeei_contig1108.3.1 ID=prot_P-wetherbeei_contig1108.3.1|Name=mRNA_P-wetherbeei_contig1108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MCHFGVRSRLAPRTEQKNEAGPRTTAKGAAMEPITSHHIDRVDWNKLRLC
GFRRPQDPDPCVALHKTRPGIAAGRKPGGRERSFLFCGRLKAYITRGIEQ
IIDGPAAFWYFKL*
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mRNA from alignment at P-wetherbeei_contig1108:5212..5901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1108.3.1 ID=mRNA_P-wetherbeei_contig1108.3.1|Name=mRNA_P-wetherbeei_contig1108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig1108:5212..5901- (Phaeothamnion wetherbeei SAG_119_79)
TCCAGCGCCGTGAGCAACAATCCGCAGGAGGTGGTATTTTCTGTGTGTTC
TTCAGGGGATTGCGTGTGTCATCTTCTGCTAGGATTTTTCCAGCTCGGTG
GCATTTCAAATGTGTCATTTCGGCGTTCGAAGTCGGTTGGCACCGCGCAC
AGAGCAGAAGAACGAGGCCGGCCCCCGAACAACGGCAAAGGGCGCGGCAA
TGGAGCCAATCACTTCACATCACATTGACCGAGTGGATTGGAATAAGCTG
CGGCTATGCGGTTTCAGAAGGCCGCAGGACCCGGACCCCTGCGTCGCATT
GCACAAAACGCGACCGGGAATAGCGGCTGGAAGGAAGCCGGGAGGCAGGG
AGCGGTCATTTCTATTTTGCGGGCGGTTGAAAGCATACATCACACGGGGG
ATTGAGCAAATAATAGATGGCCCGGCGGCCGGCGCTAACGGCGTACTTCA
TCTTGAAACCCTTTTTGGTATTTCAAGCTTTGAAAAGTCGTGTGAATAGA
AGAAAGGGTCACCAGATCAGCGACACTAGCGCGAGGAAGCGTCGTCTAGC
CTAATTAACGTTGCGCCTCACCACACACCACGTCAAGAAAACGCGGTGGC
GGCAGACGCGTGGCGGCGAGCGGATGGCGGCAGCATGGGTGTGCTTTAGG
CCTGGGTTTTGCTTATTTATAAAAACACATTTGCTTCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1108:5212..5901-

>mRNA_P-wetherbeei_contig1108.3.1 ID=mRNA_P-wetherbeei_contig1108.3.1|Name=mRNA_P-wetherbeei_contig1108.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig1108:5212..5901- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTCATTTCGGCGTTCGAAGTCGGTTGGCACCGCGCACAGAGCAGAA
GAACGAGGCCGGCCCCCGAACAACGGCAAAGGGCGCGGCAATGGAGCCAA
TCACTTCACATCACATTGACCGAGTGGATTGGAATAAGCTGCGGCTATGC
GGTTTCAGAAGGCCGCAGGACCCGGACCCCTGCGTCGCATTGCACAAAAC
GCGACCGGGAATAGCGGCTGGAAGGAAGCCGGGAGGCAGGGAGCGGTCAT
TTCTATTTTGCGGGCGGTTGAAAGCATACATCACACGGGGGATTGAGCAA
ATAATAGATGGCCCGGCGGCCTTTTGGTATTTCAAGCTTTGA
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