mRNA_P-wetherbeei_contig11073.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11073.1.1
Unique NamemRNA_P-wetherbeei_contig11073.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A7Y4H825_9BRAD (Ubiquinol-cytochrome C chaperone n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A7Y4H825_9BRAD)

HSP 1 Score: 145 bits (365), Expect = 3.390e-42
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            F VPDTVNGRFD++LLHLWL+LRRL+++E G ALSQALFD FC+DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  TE  E
Sbjct:   39 FGVPDTVNGRFDLLLLHLWLVLRRLKSAEGGPALSQALFDHFCNDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALTEGHE 125
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: UPI001CE2C821 (ubiquinol-cytochrome C chaperone n=1 Tax=Bradyrhizobium sp. WSM 1738 TaxID=2821405 RepID=UPI001CE2C821)

HSP 1 Score: 143 bits (361), Expect = 1.290e-41
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKT 249
            F VPDTVNGRFD++LLHLWL+LRRLR+ E GAALSQ LFD FCSDMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  T
Sbjct:   39 FAVPDTVNGRFDLLLLHLWLVLRRLRSVEGGAALSQGLFDHFCSDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDMALT 121
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A508TLQ8_9BRAD (Ubiq_cyt_C_chap domain-containing protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TLQ8_9BRAD)

HSP 1 Score: 142 bits (357), Expect = 5.540e-41
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    7 VPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            VPDTVNGRFD++L+HLWL+LRRL+++EAG  LSQALFD FC+DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  T+ +E
Sbjct:   41 VPDTVNGRFDLLLMHLWLVLRRLKSAEAGPDLSQALFDHFCTDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALTDSEE 125
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A7Y4GVG3_9BRAD (Ubiquinol-cytochrome C chaperone n=1 Tax=Bradyrhizobium australiense TaxID=2721161 RepID=A0A7Y4GVG3_9BRAD)

HSP 1 Score: 141 bits (356), Expect = 7.410e-41
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            F VPDTVNGRFD++LLHLWL+LRRL ++E G ALSQ LFD FC+DMD NLREMGVGD TVPKRM  F EAFYGRTAAYD+ +TE  E
Sbjct:   39 FGVPDTVNGRFDLLLLHLWLVLRRLNSAEGGTALSQGLFDYFCNDMDDNLREMGVGDFTVPKRMQAFGEAFYGRTAAYDLAQTEGRE 125
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A0D7NDQ1_9BRAD (Ubiquinol-cytochrome C chaperone n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0D7NDQ1_9BRAD)

HSP 1 Score: 141 bits (356), Expect = 7.850e-41
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    7 VPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            VPDTVNGRFD++L+HLWL+LRR ++ EAG+ LSQALFD FC+DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  T+ DE
Sbjct:   41 VPDTVNGRFDLLLMHLWLVLRRFKSVEAGSDLSQALFDHFCTDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALTDSDE 125
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: UPI001BA92493 (ubiquinol-cytochrome C chaperone family protein n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA92493)

HSP 1 Score: 141 bits (356), Expect = 7.850e-41
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    7 VPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            VPDTVNGRFD++L+HLWL+LRRLR  EAG+ LSQALFD FC+DMD NLREMGVGD TVPKRM  F EAFYGRTAAYD+  T+ DE
Sbjct:   41 VPDTVNGRFDLLLMHLWLVLRRLRTVEAGSDLSQALFDHFCTDMDDNLREMGVGDQTVPKRMKAFGEAFYGRTAAYDLALTDSDE 125
[Close]
BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: W3RGP8_9BRAD (Ubiquinol-cytochrome C chaperone n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RGP8_9BRAD)

HSP 1 Score: 140 bits (353), Expect = 2.740e-40
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDI 240
            + VPDTVNGRFDM++LHLW++LRRLR  E G  LSQ LFD+FCSDMDANLREMG+GDLTVPK+ML FAEAFYGRT AYD+
Sbjct:   43 YGVPDTVNGRFDMIVLHLWMVLRRLRGIEGGTILSQGLFDQFCSDMDANLREMGIGDLTVPKKMLGFAEAFYGRTGAYDL 122
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BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A0R3BSM3_9BRAD (Ubiquinol-cytochrome C chaperone n=34 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3BSM3_9BRAD)

HSP 1 Score: 140 bits (352), Expect = 3.180e-40
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    7 VPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDETRQVQNF 282
            VPDTVNGRFD++L+HLWL+LRRL++ E G ALSQALFD FC DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  T D E    ++F
Sbjct:   41 VPDTVNGRFDLLLMHLWLVLRRLKSVEGGVALSQALFDHFCIDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALT-DSEAALAESF 131
[Close]
BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A1B1UGG8_9BRAD (Ubiquinol-cytochrome C chaperone n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UGG8_9BRAD)

HSP 1 Score: 140 bits (352), Expect = 3.180e-40
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDE 261
            F VPDTVNGRFD++L+HLWL+LRRL++ E G ALSQ LFD FC+DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  TE  E
Sbjct:   39 FGVPDTVNGRFDLLLVHLWLVLRRLKSVEEGVALSQGLFDYFCNDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALTEGRE 125
[Close]
BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Match: A0A1R1Q9U6_9BRAD (Ubiquinol-cytochrome C chaperone n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A1R1Q9U6_9BRAD)

HSP 1 Score: 140 bits (352), Expect = 3.180e-40
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    7 VPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANLREMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDETRQVQNF 282
            VPDTVNGRFD++L+HLWL+LRRL++ E G ALSQALFD FC DMD NLREMGVGDLTVPKRM  F EAFYGRTAAYD+  T D E    ++F
Sbjct:   41 VPDTVNGRFDLLLMHLWLVLRRLKSVEGGVALSQALFDHFCIDMDDNLREMGVGDLTVPKRMQAFGEAFYGRTAAYDLALT-DSEAALAESF 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11073.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4H825_9BRAD3.390e-4277.01Ubiquinol-cytochrome C chaperone n=2 Tax=Bradyrhiz... [more]
UPI001CE2C8211.290e-4180.72ubiquinol-cytochrome C chaperone n=1 Tax=Bradyrhiz... [more]
A0A508TLQ8_9BRAD5.540e-4175.29Ubiq_cyt_C_chap domain-containing protein n=4 Tax=... [more]
A0A7Y4GVG3_9BRAD7.410e-4174.71Ubiquinol-cytochrome C chaperone n=1 Tax=Bradyrhiz... [more]
A0A0D7NDQ1_9BRAD7.850e-4175.29Ubiquinol-cytochrome C chaperone n=2 Tax=unclassif... [more]
UPI001BA924937.850e-4176.47ubiquinol-cytochrome C chaperone family protein n=... [more]
W3RGP8_9BRAD2.740e-4077.50Ubiquinol-cytochrome C chaperone n=1 Tax=Afipia sp... [more]
A0A0R3BSM3_9BRAD3.180e-4071.74Ubiquinol-cytochrome C chaperone n=34 Tax=Bradyrhi... [more]
A0A1B1UGG8_9BRAD3.180e-4074.71Ubiquinol-cytochrome C chaperone n=9 Tax=Bradyrhiz... [more]
A0A1R1Q9U6_9BRAD3.180e-4071.74Ubiquinol-cytochrome C chaperone n=6 Tax=Bradyrhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11073contigP-wetherbeei_contig11073:6..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog398525.KB900701_gene5344
PFAMsUbiq_cyt_C_chap
Model size291
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K17662
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.37e-42
EggNOG OGsCOG5452@1|root,COG5452@2|Bacteria,1N12T@1224|Proteobacteria,2UCES@28211|Alphaproteobacteria,3JRTC@41294|Bradyrhizobiaceae
DescriptionUbiquinol-cytochrome C chaperone
Cds size291
COG categoryS
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.2957683-CDS-P-wetherbeei_contig11073:5..2961683185896.2957683-CDS-P-wetherbeei_contig11073:5..296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11073 6..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11073.1.1prot_P-wetherbeei_contig11073.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11073 6..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11073.1.1

>prot_P-wetherbeei_contig11073.1.1 ID=prot_P-wetherbeei_contig11073.1.1|Name=mRNA_P-wetherbeei_contig11073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
FRVPDTVNGRFDMVLLHLWLILRRLRASEAGAALSQALFDRFCSDMDANL
REMGVGDLTVPKRMLKFAEAFYGRTAAYDITKTEDDETRQVQNFAS*
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mRNA from alignment at P-wetherbeei_contig11073:6..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11073.1.1 ID=mRNA_P-wetherbeei_contig11073.1.1|Name=mRNA_P-wetherbeei_contig11073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig11073:6..296+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCGCGTACCGGACACGGTTAACGGCCGTTTCGACATGGTGCTGCTGCA
TCTTTGGCTGATTCTGCGCCGCTTGCGCGCATCCGAGGCTGGGGCTGCTC
TATCGCAGGCGCTGTTCGACCGCTTCTGCAGCGACATGGACGCGAACCTG
CGCGAAATGGGCGTCGGCGATCTGACGGTGCCGAAGCGGATGCTGAAATT
TGCCGAGGCGTTTTACGGCCGCACCGCGGCCTACGACATCACCAAGACGG
AGGACGACGAGACTCGGCAGGTGCAGAATTTCGCCTCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11073:6..296+

>mRNA_P-wetherbeei_contig11073.1.1 ID=mRNA_P-wetherbeei_contig11073.1.1|Name=mRNA_P-wetherbeei_contig11073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig11073:6..296+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCGCGTACCGGACACGGTTAACGGCCGTTTCGACATGGTGCTGCTGCA
TCTTTGGCTGATTCTGCGCCGCTTGCGCGCATCCGAGGCTGGGGCTGCTC
TATCGCAGGCGCTGTTCGACCGCTTCTGCAGCGACATGGACGCGAACCTG
CGCGAAATGGGCGTCGGCGATCTGACGGTGCCGAAGCGGATGCTGAAATT
TGCCGAGGCGTTTTACGGCCGCACCGCGGCCTACGACATCACCAAGACGG
AGGACGACGAGACTCGGCAGGTGCAGAATTTCGCCTCGTAA
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