mRNA_P-wetherbeei_contig11071.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11071.3.1
Unique NamemRNA_P-wetherbeei_contig11071.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11071.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11071contigP-wetherbeei_contig11071:613..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size430
Hectar predicted targeting categorysignal peptide
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.209798-UTR-P-wetherbeei_contig11071:612..6221683185896.209798-UTR-P-wetherbeei_contig11071:612..622Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11071 613..622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185896.2194693-CDS-P-wetherbeei_contig11071:622..10421683185896.2194693-CDS-P-wetherbeei_contig11071:622..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11071 623..1042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11071.3.1prot_P-wetherbeei_contig11071.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11071 623..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11071.3.1

>prot_P-wetherbeei_contig11071.3.1 ID=prot_P-wetherbeei_contig11071.3.1|Name=mRNA_P-wetherbeei_contig11071.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MRGWWVRVLTFGFGFRLVALELAAVPLCRGLRDQSLFFVGSRGLRRKARD
FLLIPCLTGPSFLPLVRVTVQQSNAILLMLCPLRFSGAVFFGHGTVSFPI
ARSKPSALPALPPCCSAAPSAIRRLRGTPPYSHNTETRF*
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mRNA from alignment at P-wetherbeei_contig11071:613..1042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11071.3.1 ID=mRNA_P-wetherbeei_contig11071.3.1|Name=mRNA_P-wetherbeei_contig11071.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=430bp|location=Sequence derived from alignment at P-wetherbeei_contig11071:613..1042+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCGCCGTCATGCGCGGCTGGTGGGTTCGGGTTTTGACTTTTGGGTTTG
GGTTTCGGCTTGTGGCTTTGGAGCTCGCGGCAGTTCCGCTTTGCCGTGGA
TTGCGTGACCAATCTCTGTTTTTTGTTGGCAGCAGAGGGTTGAGGAGAAA
AGCGCGTGACTTTCTACTCATACCTTGTCTTACAGGTCCGTCTTTCCTGC
CTTTGGTACGAGTCACTGTTCAGCAGAGCAATGCCATCTTGCTCATGCTT
TGCCCGCTGCGATTTTCCGGGGCTGTCTTTTTCGGGCATGGGACCGTTTC
CTTTCCCATTGCTAGGTCTAAACCTTCTGCGCTTCCGGCTCTGCCGCCCT
GCTGTTCGGCCGCGCCATCAGCCATACGTCGTCTACGTGGAACACCGCCC
TATTCTCACAACACCGAAACCCGTTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11071:613..1042+

>mRNA_P-wetherbeei_contig11071.3.1 ID=mRNA_P-wetherbeei_contig11071.3.1|Name=mRNA_P-wetherbeei_contig11071.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig11071:613..1042+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGCTGGTGGGTTCGGGTTTTGACTTTTGGGTTTGGGTTTCGGCT
TGTGGCTTTGGAGCTCGCGGCAGTTCCGCTTTGCCGTGGATTGCGTGACC
AATCTCTGTTTTTTGTTGGCAGCAGAGGGTTGAGGAGAAAAGCGCGTGAC
TTTCTACTCATACCTTGTCTTACAGGTCCGTCTTTCCTGCCTTTGGTACG
AGTCACTGTTCAGCAGAGCAATGCCATCTTGCTCATGCTTTGCCCGCTGC
GATTTTCCGGGGCTGTCTTTTTCGGGCATGGGACCGTTTCCTTTCCCATT
GCTAGGTCTAAACCTTCTGCGCTTCCGGCTCTGCCGCCCTGCTGTTCGGC
CGCGCCATCAGCCATACGTCGTCTACGTGGAACACCGCCCTATTCTCACA
ACACCGAAACCCGTTTCTAA
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