mRNA_P-wetherbeei_contig11064.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11064.1.2
Unique NamemRNA_P-wetherbeei_contig11064.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A3M6VAJ3_9STRA (RRM domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAJ3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.230e-32
Identity = 52/89 (58.43%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  YGE+GD+YIP+   ++E RGFAFVR+  ++DA+ AIE ++G+ F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:   12 LKVDNVPFQIGSDELRDLFSKYGEIGDVYIPRARGSNESRGFAFVRFMEKRDAEDAIEGMEGQDFQGRDLRVQFAKQRRPDNPREFYSR 100
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BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.410e-32
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFY 261
            L+VDNI FR+   E+R +FD YGEVGD+YIP+D  T +PRGFAFVRY    DA+ A+ A+DGK  +GR LRIQFA QRRP+NPR+++
Sbjct:   17 LKVDNITFRTTADEVRRVFDKYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPDNPREYF 103
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BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A3R7J0C6_9STRA (RRM domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J0C6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.030e-31
Identity = 52/89 (58.43%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  YGE+GD+YIP+   ++E RGFAFVR+  ++DA+ AI+A++G+ F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:   12 LKVDNVPFQIGSDELRDLFSKYGEIGDVYIPRARGSNESRGFAFVRFISKRDAEDAIDAMEGQEFQGRDLRVQFAKQRRPDNPREFYSR 100
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BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: W2PIG4_PHYPN (RRM domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PIG4_PHYPN)

HSP 1 Score: 119 bits (297), Expect = 1.020e-30
Identity = 50/89 (56.18%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+  ++DA+ AI+ ++G+ F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:   12 LKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDAEDAIDGMEGQEFQGRDLRVQFAKQRRPDNPREFYSR 100
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A6A3Y3K4_9STRA (RRM domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y3K4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.050e-30
Identity = 50/89 (56.18%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+  ++DA+ AI+ ++G+ F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:   12 LKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARDSNESRGFAFVRFMEKRDAEDAIDGMEGQDFQGRDLRVQFAKQRRPDNPREFYSR 100
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A0P1AEZ7_PLAHL (Serine arginine-rich splicing factor 2-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEZ7_PLAHL)

HSP 1 Score: 117 bits (293), Expect = 2.600e-30
Identity = 50/89 (56.18%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+  ++DA+ AI+ ++G  F GR+LR+QFAKQRRP+NPR+FY R
Sbjct:   12 LKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFLEKRDAEDAIDGMEGLDFQGRDLRVQFAKQRRPDNPREFYAR 100
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A484E4S9_BRELC (RRM domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4S9_BRELC)

HSP 1 Score: 117 bits (292), Expect = 6.060e-30
Identity = 50/89 (56.18%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF  G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+   +DA+ AI+ ++G  F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:   12 LKVDNVPFHIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFLERRDAEDAIDGMEGLEFQGRDLRVQFAKQRRPDNPREFYSR 100
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: G5A107_PHYSP (RRM domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A107_PHYSP)

HSP 1 Score: 112 bits (280), Expect = 1.520e-29
Identity = 48/84 (57.14%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPR 252
            L+VDN+PF+ G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+  ++DA+ AIE ++G+ F GR+LR+QFAKQRRP+NPR
Sbjct:    9 LKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFMEKRDAEDAIEGMEGQEFQGRDLRVQFAKQRRPDNPR 92
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: A0A7S2W6U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6U9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.090e-29
Identity = 49/89 (55.06%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF +   E+RE F+ +GE+GD+YIP+D  T   RGFAFVR+  ++DAD A E +DGK F G+ELR+Q A++RRP NPR++Y+R
Sbjct:   29 LKVDNVPFEARPEEIREAFERFGEIGDVYIPRDHYTQRSRGFAFVRFADKRDADDAAEKMDGKDFQGKELRVQPAQRRRPANPREYYSR 117
[Close]
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Match: D0NUP0_PHYIT (Mannitol dehydrogenase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NUP0_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 2.040e-28
Identity = 50/89 (56.18%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTREKDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTR 267
            L+VDN+PF+ G  ELR++F  +GE+GD+YIP+   ++E RGFAFVR+  ++DA+ AI+ ++G+ F GR+LR+QFAKQRRP+NPR+FY+R
Sbjct:  359 LKVDNVPFQIGSDELRDLFSKFGEIGDVYIPRARGSNESRGFAFVRFIEKRDAEDAIDGMEGQEFQGRDLRVQFAKQRRPDNPREFYSR 447
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11064.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M6VAJ3_9STRA6.230e-3258.43RRM domain-containing protein n=2 Tax=Peronospora ... [more]
A0A835ZAC4_9STRA6.410e-3260.92RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A3R7J0C6_9STRA1.030e-3158.43RRM domain-containing protein n=4 Tax=Phytophthora... [more]
W2PIG4_PHYPN1.020e-3056.18RRM domain-containing protein n=9 Tax=Phytophthora... [more]
A0A6A3Y3K4_9STRA1.050e-3056.18RRM domain-containing protein n=4 Tax=Phytophthora... [more]
A0A0P1AEZ7_PLAHL2.600e-3056.18Serine arginine-rich splicing factor 2-like isofor... [more]
A0A484E4S9_BRELC6.060e-3056.18RRM domain-containing protein n=1 Tax=Bremia lactu... [more]
G5A107_PHYSP1.520e-2957.14RRM domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7S2W6U9_9STRA8.090e-2955.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D0NUP0_PHYIT2.040e-2856.18Mannitol dehydrogenase, putative n=2 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11064contigP-wetherbeei_contig11064:225..1971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_17045T0
PFAMsADH_N
Model size459
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.35e-29
EggNOG OGsCOG1064@1|root,KOG4207@1|root,KOG0023@2759|Eukaryota,KOG4207@2759|Eukaryota,3Q9H0@4776|Peronosporales
DescriptionAlcohol dehydrogenase GroES-like domain
Cds size459
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185895.797269-CDS-P-wetherbeei_contig11064:224..3931683185895.797269-CDS-P-wetherbeei_contig11064:224..393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11064 225..393 -
1683185895.8109882-CDS-P-wetherbeei_contig11064:595..6821683185895.8109882-CDS-P-wetherbeei_contig11064:595..682Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11064 596..682 -
1683185895.8208294-CDS-P-wetherbeei_contig11064:1043..11841683185895.8208294-CDS-P-wetherbeei_contig11064:1043..1184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11064 1044..1184 -
1683185895.8385105-CDS-P-wetherbeei_contig11064:1909..19711683185895.8385105-CDS-P-wetherbeei_contig11064:1909..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11064 1910..1971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11064.1.2prot_P-wetherbeei_contig11064.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11064 225..1971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11064.1.2

>prot_P-wetherbeei_contig11064.1.2 ID=prot_P-wetherbeei_contig11064.1.2|Name=mRNA_P-wetherbeei_contig11064.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
LQVDNIPFRSGVPELREIFDAYGEVGDIYIPKDARTSEPRGFAFVRYTRE
KDADRAIEALDGKPFNGRELRIQFAKQRRPENPRQFYTRHRYICLRARSG
DRRHRSRSRDRDRDYRRDDRDSRRDRDRSRDRDRRGSSRERDDRRDHDRD
RER
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mRNA from alignment at P-wetherbeei_contig11064:225..1971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11064.1.2 ID=mRNA_P-wetherbeei_contig11064.1.2|Name=mRNA_P-wetherbeei_contig11064.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1747bp|location=Sequence derived from alignment at P-wetherbeei_contig11064:225..1971- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAGGTCGACAACATCCCCTTTCGTTCAGGCGTTCCGGAGCTGCGCGA
GATTTTCGACGCGTAAGTGCAGAGCCTTTTTGCTTGTCCTTCTACTGGCG
CGCATCAAAACATCTACTAGCATCTATTCTTCCTGCAATGTTTTCCGTAA
AATGCTGGAGTCCAATATGCTGCTGTCTCCAATGCCGGCACCGTGCGCAC
CGTATTCCGTCGCCGTGGCTTTCCCCAGCGGCTTTCGAAGGCGGTGTCGT
GCACCATAGGAGACGTGTCGGTGATGGTGTTTGGGACAGTGCAAAGGGGA
CGAGCAAAACCCTGGCTGGCGGTCGTGAATCGTCCTGATGATGGTGGCGC
CTTTCGTGCTGGCTGTTCGTCGTGTCAAGGGTTCCCGGACGGGGCACGCC
GAAACAAGAAGGGTCATGTGCCGCCTACCTGTTCCTGTTCCGTCCGTGCC
ACCGTTCCCGGTGCTGCCACTCCGAACGAAGATCACATGCGGCGGGGCTT
CGCGTAGACGGCTGACCGGCAGCAGCAGCGCGGGACGACCGCCGGAGAAC
ACGACAACGGACGCTGTTCCTGTCTTTGCGAGTCGCTCCACCGCCGCCGC
CGCAGCCGCCGCTCCTGCCGTGCACGTCCTGTCCTGCACTTTTGACTGCT
GCCAAACCAACCTCTGCGCGTCCCCGCCGCCGCCGCCGCGAAATCATGAC
CATGAACCGGGACGGCTGCAACACGTACGCGTGATAAACATCGTCGGGGA
CGGACTTCTTCTCTTCGCTTGTTCTGTCTGCTTGCAGATACGGTGAAGTG
GGCGACATCTACATCCCCAAGGACGCGCGCACGAGCGAGCCGCGCGGCTT
CGCCTTCGTGCGCTACACGCGTGAGAAGGACGCCGACCGCGCTATCGAAG
CGCTTGACGGCAAGCCCTTCAACGGCCGGTACGTTTTGTCCAGCGGTAAC
CGTCGCGTAATCGTTTACGTTTTCTTTGCCGGTCGTGATGACATGCGGCG
TTTTCCTGGTCAATCGTGATGGCAGAGTCCAGCCAGGTCACGGAATGCCA
ACACCTTCTTTAGGCGTTAAGGCAGCACGGTTTAGTCTTTGTGCCATAGT
GACCTCTCTGTTCTTGCAGCCGATCCCGTCCTGGCTAAGGCATCTCTTTT
GAGGCGGCAAAATTCCGCGAAGACCTTGGCGTTGCCACTATGCCGCCATC
GAGAGAGATACTGCTCATTTCTGACACTCCCCGGTCTCTTTCATTCTGCC
TCTTTGCCGCCGTAACTTCCGCACATTGCCCTTTTGCAGGGAGCTCCGGA
TCCAGTTCGCCAAGCAGCGCCGACCCGAAAACCCCCGTCAGTTCTACACC
CGCCACAGGTACATATGTCTGCGTGCGTCGTTTGTCCTTTGCATTTGTCC
TCCAACGTGTTATTCTGTTTCCCTCCTTCCTCCGTTAGTGCCATTACGCT
TGAAGCTCGCCGTAACTGAGAAATGAGGAACCACCTCTTACCCTGGAATT
CACGCTGACTGCCTTTGCCTATGCCATCCCGCCGTTGCTGCTGCCTCCCT
CGCCGCCTCGCCTGCACGGCAGCCGCAGCCGCAGCGGCGACCGCCGCCAC
CGCTCTCGCAGCCGCGACCGTGACCGTGACTACAGGCGAGATGACCGCGA
CTCCCGCCGGGACAGGGACCGGAGCCGGGACCGGGACCGGCGGGGCAGCA
GCCGGGAGCGTGACGATCGGCGCGACCACGACCGGGACCGCGAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11064:225..1971-

>mRNA_P-wetherbeei_contig11064.1.2 ID=mRNA_P-wetherbeei_contig11064.1.2|Name=mRNA_P-wetherbeei_contig11064.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig11064:225..1971- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAGGTCGACAACATCCCCTTTCGTTCAGGCGTTCCGGAGCTGCGCGA
GATTTTCGACGCATACGGTGAAGTGGGCGACATCTACATCCCCAAGGACG
CGCGCACGAGCGAGCCGCGCGGCTTCGCCTTCGTGCGCTACACGCGTGAG
AAGGACGCCGACCGCGCTATCGAAGCGCTTGACGGCAAGCCCTTCAACGG
CCGGGAGCTCCGGATCCAGTTCGCCAAGCAGCGCCGACCCGAAAACCCCC
GTCAGTTCTACACCCGCCACAGGTACATATGTCTGCGTGCCCGCAGCGGC
GACCGCCGCCACCGCTCTCGCAGCCGCGACCGTGACCGTGACTACAGGCG
AGATGACCGCGACTCCCGCCGGGACAGGGACCGGAGCCGGGACCGGGACC
GGCGGGGCAGCAGCCGGGAGCGTGACGATCGGCGCGACCACGACCGGGAC
CGCGAGCGG
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