mRNA_P-wetherbeei_contig1106.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1106.2.1
Unique NamemRNA_P-wetherbeei_contig1106.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1106.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1106contigP-wetherbeei_contig1106:2231..3051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size175
Hectar predicted targeting categorysignal peptide
Exons3
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185895.65525-CDS-P-wetherbeei_contig1106:2230..23141683185895.65525-CDS-P-wetherbeei_contig1106:2230..2314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1106 2231..2314 +
1683185895.662896-CDS-P-wetherbeei_contig1106:2771..28301683185895.662896-CDS-P-wetherbeei_contig1106:2771..2830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1106 2772..2830 +
1683185895.6699793-CDS-P-wetherbeei_contig1106:3020..30511683185895.6699793-CDS-P-wetherbeei_contig1106:3020..3051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1106 3021..3051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1106.2.1prot_P-wetherbeei_contig1106.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1106 2231..3051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1106.2.1

>prot_P-wetherbeei_contig1106.2.1 ID=prot_P-wetherbeei_contig1106.2.1|Name=mRNA_P-wetherbeei_contig1106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MGAGGRKVAFLRIAVILCVFEAGLGVEAQARTAGKWAIWRQCGSTTSSIG
VPTAVSAD
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mRNA from alignment at P-wetherbeei_contig1106:2231..3051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1106.2.1 ID=mRNA_P-wetherbeei_contig1106.2.1|Name=mRNA_P-wetherbeei_contig1106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=821bp|location=Sequence derived from alignment at P-wetherbeei_contig1106:2231..3051+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCGGGCGGACGCAAGGTCGCTTTTCTCCGCATCGCCGTGATCCT
GTGCGTCTTTGAGGCCGGCTTGGGCGTGGAGGCGGCAGAAGATGAGTTAA
CCCGAAATGCCTTCCAACCGAGCGGCAGACGGAAGACGAGCGAAAGGGAG
AAACCTAGCAATGGTCGAGATAACCAGCCAAGGCGGAGAGTTCGAATATG
GCGGAGATACTGCTGCGTTGTGCGCACAACCATAACGAGACCGTGGCGAA
CTGTAGCGACCTCTGGCCTACCGACACCGCCACTCTACCCATGTGCGCGG
AGCGAGTGGCAAGATGCCTCAGACAACACTCGCTCTCCGCCCCTCTTTCT
CTTTCCTTCCTTTTCTGCATTTTTTGAGCCCCATGCGCTGCGTTAGTGGC
GATGTGCTGCCTGCACTCCCTCACAAGCAAGCTCCTTACATCCTCATTCT
TTCTTCCAATCTGGCGGCCGGTGTTCTCCGCGCGGTTGGATTAGCGCACG
GGACTGATTCCCCGGTCGGACATGATGGTCCACCACGTCAGCAAGCACGG
ACAGCAGGAAAATGGGCGATTTGGAGGCAATGCGGCAGTACTACGAGCAG
GTGAGAGGAAGAAATGTATTCCGAGAAGGTTCCTGAACCGTAAAATGCGC
TCTTGTGACGGATGCCGCCGTACAACAAGAAGGCTGCCACGTAAACGGCT
GCAGAATCGATGGGGAATTCTTTTCGAGGGTTCGTAACAACTTTTGAGGA
GGAATTTAATTCCCGCCCCCCTTCTTCCCCCCCTTTGCAGTATTGGCGTT
CCCACTGCAGTGTCCGCAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1106:2231..3051+

>mRNA_P-wetherbeei_contig1106.2.1 ID=mRNA_P-wetherbeei_contig1106.2.1|Name=mRNA_P-wetherbeei_contig1106.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig1106:2231..3051+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCGGGCGGACGCAAGGTCGCTTTTCTCCGCATCGCCGTGATCCT
GTGCGTCTTTGAGGCCGGCTTGGGCGTGGAGGCGCAAGCACGGACAGCAG
GAAAATGGGCGATTTGGAGGCAATGCGGCAGTACTACGAGCAGTATTGGC
GTTCCCACTGCAGTGTCCGCAGAT
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