mRNA_P-wetherbeei_contig11054.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11054.1.1
Unique NamemRNA_P-wetherbeei_contig11054.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11054.1.1 vs. uniprot
Match: A0A6H5JSK4_9PHAE (CEP76-C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.700e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:  337 VFLRVTVEEGRAFVGQLADDRTVAQKS-EFQVHIQFDGQRAATRRQVPASVEPHFG-ETFLFQLCD--HVPRTAGEWAALLERHCPIHVCLTSQR 609
            V+L+VTV EGRA VG+LA++RT +     F V +QF+ QRA TR +V   VEP FG E F+F L +   +P TAG WA+ L+   P+HV LT  +
Sbjct:  136 VYLKVTVVEGRALVGELANERTTSSALYNFSVDLQFNAQRARTRNEVRCCVEPSFGSEGFVFVLREAHELPVTAGGWASFLQTDLPLHVALTKHK 230
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BLAST of mRNA_P-wetherbeei_contig11054.1.1 vs. uniprot
Match: A0A7R9UA61_9STRA (Centrosomal protein of 76 kDa (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA61_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.810e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:  337 VFLRVTVEEGRAFVGQLADDRTVAQKSEFQVHIQFDGQRAATRRQVPASVEPHFGETFLFQLCDHVPRTAGEWAALLERHCPIHVCLTSQRARQPP 624
            ++LR+ V  GRAF+GQLA++R     S+FQVH+ F   R ++ R  PA+VEP F     F+L + +P T  EWA LL+R     +C T      PP
Sbjct:   56 LYLRIGVLGGRAFLGQLAEERASNVLSDFQVHVAFRSHRGSSSR-APAAVEPQFHSRITFELGE-LPSTRDEWAFLLDRG----ICATGDEVADPP 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSK4_9PHAE8.700e-1548.42CEP76-C2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7R9UA61_9STRA9.810e-1141.67Centrosomal protein of 76 kDa (Fragment) n=2 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11054contigP-wetherbeei_contig11054:1135..2220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX35199
Preferred nameCEP76
PFAMsCEP76-C2
Model size679
Max annot lvl2759|Eukaryota
KEGG koko:K16457
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010824,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046599,GO:0046605,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051493,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0097711,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902115,GO:1902749,GO:1903047
Exons3
Evalue3.09e-08
EggNOG OGs28I44@1|root,2QQEI@2759|Eukaryota
Descriptionregulation of centriole replication
Cds size678
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185895.4289992-CDS-P-wetherbeei_contig11054:1134..13381683185895.4289992-CDS-P-wetherbeei_contig11054:1134..1338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11054 1135..1338 +
1683185895.4389296-CDS-P-wetherbeei_contig11054:1569..18151683185895.4389296-CDS-P-wetherbeei_contig11054:1569..1815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11054 1570..1815 +
1683185895.4480646-CDS-P-wetherbeei_contig11054:1991..22191683185895.4480646-CDS-P-wetherbeei_contig11054:1991..2219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11054 1992..2219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11054.1.1prot_P-wetherbeei_contig11054.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11054 1135..2219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11054.1.1

>prot_P-wetherbeei_contig11054.1.1 ID=prot_P-wetherbeei_contig11054.1.1|Name=mRNA_P-wetherbeei_contig11054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
EDSRSATLLYFVYARQPQHHLFMMTTEGGEPLLSAKGVERLTSEFAQGLR
EGGAYDRIRNAIQLFVQEARGACFEEDNGLVLEEVVRSIENKLGICPTSL
AHGAAKPAPKERVFLRVTVEEGRAFVGQLADDRTVAQKSEFQVHIQFDGQ
RAATRRQVPASVEPHFGETFLFQLCDHVPRTAGEWAALLERHCPIHVCLT
SQRARQPPAAVGTSTAAAAAAAAAGQ
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mRNA from alignment at P-wetherbeei_contig11054:1135..2220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11054.1.1 ID=mRNA_P-wetherbeei_contig11054.1.1|Name=mRNA_P-wetherbeei_contig11054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig11054:1135..2220+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGACAGCAGATCCGCAACACTTCTCTACTTTGTGTACGCACGACAGCC
CCAGCATCATCTCTTTATGATGACGACTGAGGGAGGCGAGCCGCTCCTCT
CCGCGAAGGGCGTGGAAAGGTTGACAAGTGAATTCGCGCAAGGGCTGAGA
GAGGGAGGGGCCTACGACCGCATCCGCAATGCCATTCAGCTGTTCGTTCA
GGAGGTGTGAAAGCCTACTACAGCTCTTTCATCGTGCTCAGCCCCTTCAG
TTTTGTTTCTTTTGCACCGTTTATATCGTGCCTAACTTTTTGCGTTTAGC
AAAAACTTACGCTTCATGTAGTTGCGCGATGTTTGGCGCATCATGTAAGG
TGACCAAGCTGTTGCAAGATGACACCAACTGGCGATTCCATCCTCTCTCT
CGTTGGCTTGCACTCTTTCATCAACGTTGCAACAGGCGCGCGGAGCGTGC
TTTGAGGAAGACAACGGGCTTGTTCTGGAAGAAGTCGTGCGGAGCATTGA
AAACAAGCTCGGCATATGCCCCACGTCACTGGCCCATGGAGCTGCAAAGC
CCGCGCCAAAGGAACGCGTTTTTCTTCGCGTGACGGTGGAAGAAGGCCGC
GCGTTCGTTGGGCAGCTCGCGGACGACCGTACCGTCGCACAAAAGTCTGA
ATTTCAAGTGCACATTCAGTTCGATGGACAGGTGCGAAAGCAGTTTTCCA
ATGGACGTCGCTTACCCCACAAAACAAGCACCAGCAAAAGCTTCATTTGA
TTCAAAACCTTTGGCGCAATTCCCTCCAACCTTGCCTCTCTTGCTGCTTT
CTCGATCAATCGCGCACTGTCCGCTTTCCTACGCTCGGCGGTCCCCGCCT
TTGTCAGCGAGCGGCGACGCGGCGGCAAGTGCCCGCCAGCGTCGAGCCTC
ACTTCGGGGAGACCTTCCTCTTCCAGCTGTGCGACCATGTCCCACGTACT
GCGGGTGAGTGGGCAGCGCTTCTGGAGCGCCACTGCCCCATCCACGTATG
CCTCACCTCCCAGCGCGCCCGCCAGCCGCCGGCCGCCGTTGGCACCTCAA
CCGCGGCGGCGGCGGCAGCGGCGGCGGCCGGGCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11054:1135..2220+

>mRNA_P-wetherbeei_contig11054.1.1 ID=mRNA_P-wetherbeei_contig11054.1.1|Name=mRNA_P-wetherbeei_contig11054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig11054:1135..2220+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGACAGCAGATCCGCAACACTTCTCTACTTTGTGTACGCACGACAGCC
CCAGCATCATCTCTTTATGATGACGACTGAGGGAGGCGAGCCGCTCCTCT
CCGCGAAGGGCGTGGAAAGGTTGACAAGTGAATTCGCGCAAGGGCTGAGA
GAGGGAGGGGCCTACGACCGCATCCGCAATGCCATTCAGCTGTTCGTTCA
GGAGGCGCGCGGAGCGTGCTTTGAGGAAGACAACGGGCTTGTTCTGGAAG
AAGTCGTGCGGAGCATTGAAAACAAGCTCGGCATATGCCCCACGTCACTG
GCCCATGGAGCTGCAAAGCCCGCGCCAAAGGAACGCGTTTTTCTTCGCGT
GACGGTGGAAGAAGGCCGCGCGTTCGTTGGGCAGCTCGCGGACGACCGTA
CCGTCGCACAAAAGTCTGAATTTCAAGTGCACATTCAGTTCGATGGACAG
CGAGCGGCGACGCGGCGGCAAGTGCCCGCCAGCGTCGAGCCTCACTTCGG
GGAGACCTTCCTCTTCCAGCTGTGCGACCATGTCCCACGTACTGCGGGTG
AGTGGGCAGCGCTTCTGGAGCGCCACTGCCCCATCCACGTATGCCTCACC
TCCCAGCGCGCCCGCCAGCCGCCGGCCGCCGTTGGCACCTCAACCGCGGC
GGCGGCGGCAGCGGCGGCGGCCGGGCAG
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