mRNA_P-wetherbeei_contig11040.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11040.2.2
Unique NamemRNA_P-wetherbeei_contig11040.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: D8LTE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE4_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 9.210e-51
Identity = 101/205 (49.27%), Postives = 128/205 (62.44%), Query Frame = 1
Query:   58 GNGVASDAPQLSALDYSVKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            G     DAP LS   + V G+ F++TG T G+G  I+  + +AGA+ V I+ R  D G  A  +L   +      F  AD A  EDC +L   A   +G I GLVNCAA T R  + +TTVD WD++M +NVRGPF++ QAVS+ MR K   GSIVNISS VA +GG PK STYS+SKAALN  TK+HAYEL R RIR   + +G
Sbjct:   15 GPTAQKDAPPLSVPTFDVTGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSQDTGEKAVAQLTEHTPSCRFFFVPADVAKEEDCSRLVSEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVVA-HGGIPKVSTYSVSKAALNACTKMHAYELKRSRIRVNAINVG 218          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: R1CSP3_EMIHU (Short chain dehydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CSP3_EMIHU)

HSP 1 Score: 141 bits (355), Expect = 2.260e-37
Identity = 90/198 (45.45%), Postives = 115/198 (58.08%), Query Frame = 1
Query:   88 LSALDYSVKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQR---MSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            LS+   S +GRN+LITG T GLG  I   L   GAAKV +  R A+ G  A +RLQ    + +     F  AD +      K    A   +G I G+VN AA+T R ++ STT + WD +MA N R PF++TQA +RHM EK I GSIVNISS VA  GG P    YS+SKAA + +T+ +A EL  H IR   + MG
Sbjct:    8 LSSPTLSARGRNYLITGGTQGLGFEIATQLKACGAAKVAVIARNAERGTKAVERLQAAAGVQEPFEAFFVEADLSDATGPGKAVALALAAMGAIDGVVNAAATTARGNLASTTAEDWDAMMACNARAPFLITQAATRHMIEKGIRGSIVNISS-VAGKGGAPFLMAYSVSKAAASALTRNNAAELAPHGIRVNCVEMG 204          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A848UI37_9ACTN (SDR family oxidoreductase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UI37_9ACTN)

HSP 1 Score: 132 bits (331), Expect = 8.390e-34
Identity = 80/202 (39.60%), Postives = 113/202 (55.94%), Query Frame = 1
Query:   67 VASDAPQLSALDYSVKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            ++ +A +     +   GR  L++G+T GLG  +   L   G A  ++TGR A+ GA     L+ +  E   MF  A+  S E  E L  AA ++ G +  L NC A T+R D++ TT +FWD +MA NVR PF++TQ V+R  R      S+VNI S VA YGG P  + YS+SK AL  MTK  A++LM H +R   +  G
Sbjct:    1 MSDNASRARDRSHRFGGRVALVSGSTQGLGRALLLRLAEDGLAGAVVTGRDAERGAAVVAELEALGCEA--MFHPAELDSAEQIEALVAAADDRFGRVDHLANCGAVTDRGDIWETTAEFWDWMMAVNVRAPFLLTQGVARLARRNGTPASVVNIGS-VAGYGGQPFITAYSVSKGALMTMTKTLAFQLMPHHVRVNTVNPG 199          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A6V1MI94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MI94_HETAK)

HSP 1 Score: 129 bits (324), Expect = 2.310e-32
Identity = 81/197 (41.12%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   88 LSALDYSVKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKN--IHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            LS   + V G+NF++TG   GLG  I E L   GAA V+IT R  + G      +   +      +  AD A+   C  L + A  + G +HGLVN A  T R  + ST    +D L+A+N++GPF +T+  +R MR+      GS+VNISS +AS+ G P  S YS++KAALN MTK+HA EL R R+R   L +G
Sbjct:   59 LSKPSFDVTGKNFIVTGGGQGLGRNIAECLAAQGAAGVLITCRSEEQGEKVKSYINSTNTNCQAEWMVADVAAEAQCAALVRRALGRFGALHGLVNAAGLTTRGTLESTDEATFDALLATNLKGPFFLTKHAARAMRDTAGASGGSVVNISS-IASHAGAPFISCYSVTKAALNAMTKVHALELQRDRVRVNALAIG 254          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A496R851_9SPIR (Short-chain dehydrogenase n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A496R851_9SPIR)

HSP 1 Score: 124 bits (312), Expect = 3.170e-31
Identity = 79/186 (42.47%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  115 GRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            GRN+++TG T GLG  I   L   GA  ++I GR A+ G  A   ++  S  +   F RAD    EDC ++   A    G IHGLVN A  T+R+ +   TV+ W+ +M  N R PF++ Q   RHM+EK IHGSIVNI S  A +GG+P    YS SK  L  MTK  A+ L   RIR   + +G
Sbjct:   10 GRNYIVTGGTQGLGRAIALDLAAQGADGILICGRNAENGERARADIE--SAGSRCRFVRADLQFEEDCRRVVSDAVAVFGIIHGLVNAAGLTDRSGIEDATVEHWNLMMNVNARAPFLLIQDTVRHMKEKGIHGSIVNIISDQA-HGGSPNLMAYSASKGTLATMTKNIAHALRSDRIRVNGVLIG 192          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A6H5KWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ8_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.570e-30
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  349 LGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            +G I GLVNCAA T R  + +TTV+ WD++M +NVRGPF++ QAVS+ MR K   GSIVNISS VA +GG PK STYS+SKAALN  TK+HAYEL   RIR   + +G
Sbjct:    1 MGCIDGLVNCAAWTARATLDTTTVEVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISSVVA-HGGIPKVSTYSVSKAALNACTKMHAYELKGARIRVNAINVG 107          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A2K1QE66_9GAMM (Short-chain dehydrogenase n=4 Tax=Enterobacterales TaxID=91347 RepID=A0A2K1QE66_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 1.570e-29
Identity = 79/190 (41.58%), Postives = 111/190 (58.42%), Query Frame = 1
Query:  109 VKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETA--IMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            ++G+  ++TG T G+G  I     + GAA V+I GR  D G   A RL   S E+A  + F RAD +S EDC ++   A E  G +  LVN  A T+R  +  T+ + +DQ+ A+NVRGPF + Q   + MR +NI GSIVNI S ++S  G P  + Y  SK AL  +T+  AY L+R+RIR   L +G
Sbjct:    4 LQGKVAVVTGGTQGVGAAIARQFTQQGAAAVIICGRNQDKGEKMAARL---SSESAGKVTFVRADLSSVEDCRQVIATADELYGRVDILVNAGAMTDRGSILDTSPELFDQIFATNVRGPFFLMQETVKIMRRENITGSIVNICS-MSSLAGQPFIAAYCSSKGALATLTRNTAYALLRNRIRVNALNIG 189          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: B7G702_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G702_PHATC)

HSP 1 Score: 119 bits (297), Expect = 1.790e-28
Identity = 87/233 (37.34%), Postives = 127/233 (54.51%), Query Frame = 1
Query:   31 SDPKDRHPIGNGVASDA---PQLSALDYSVKGRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRM------SKETA-IMFERADSASPEDCEKLAKAATEKLGE---IHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKN------IHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            S P  R P GN   +++   P L++L  S KGR F++TG T GLG  I   L +AGAA + +  R  D G  A + L++        K T  + F   D +  +  + +     + L     + GLVN AA T R ++F+TT + +D     NVR PF++TQA++ H R++       +  SIVNISS VA+YGG P  + YS SKAAL+ +TK +A EL  H IR   +++G
Sbjct:   13 SRPSTRAPTGNNENTESDLEPPLASLSLSTKGRYFVVTGGTQGLGLAIAIQLKKAGAAGLFLVARSPDKGQAAVEHLRQQHQLGDDGKSTCQVFFLPTDLSDTKQVQTVFSRIEDLLSTTDVVSGLVNAAAITTRGNLFTTTSNEFDTQFFVNVRAPFLLTQALAVHCRKQQTQRTSQVRASIVNISS-VAAYGGAPFITAYSASKAALSTLTKTNAAELAPHGIRVNAIQLG 244          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: UPI0003B5FDC7 (SDR family oxidoreductase n=1 Tax=Leucothrix mucor TaxID=45248 RepID=UPI0003B5FDC7)

HSP 1 Score: 117 bits (293), Expect = 3.270e-28
Identity = 76/186 (40.86%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  115 GRNFLITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIRYGRLRMG 672
            GRNFLITG T GLG       I  GA+ + + GR A+ G   A  L   S+   ++F  AD                + GE+HG+VNCA  T+R  +  T    +D+L A N + PF++ Q  SRHM E+ I G++VNI S V++YGG    + Y+ SKAAL  MTK  AY LMR++IR   L +G
Sbjct:   17 GRNFLITGGTQGLGEATARLFIERGASGIALIGRSAERGNALAAELS--SEACKVIFVPADLMDKRATRNCVAETIRQFGELHGVVNCAGCTDRGTILDTDDATYDRLFAVNTQAPFLIMQEASRHMVERGIEGTMVNICS-VSAYGGQSFLTCYTASKAALVVMTKNVAYSLMRNKIRANVLNIG 199          
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Match: A0A3B9DKC5_9PROT (Short-chain dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3B9DKC5_9PROT)

HSP 1 Score: 116 bits (291), Expect = 3.810e-28
Identity = 72/175 (41.14%), Postives = 103/175 (58.86%), Query Frame = 1
Query:  127 LITGATMGLGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADSASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASNVRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAALNGMTKIHAYELMRHRIR 651
            +ITG T GLG  +  +LI +G  K+ + GR AD GA A   L  +  +    + +AD +SP+DC  L  AA  + G ++GLVN AA T+R  +  TT++ W   M  N+RGPF+M QA++RH+ E    GS+VNI ST A Y G    + Y+ SK  L  +TK  A  + ++RIR
Sbjct:   10 IITGGTQGLGLAVARALIASGCTKITLAGRSADKGAKACAALLELGVDA--YYVQADMSSPDDCADLFNAAVTRFGFVNGLVNSAAITDRGSLTDTTLEMWQMHMDLNLRGPFLMMQALARHLIETEKTGSMVNILSTSA-YVGQSFLTPYATSKGGLLTLTKNAANAMRKNRIR 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11040.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE4_ECTSI9.210e-5149.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R1CSP3_EMIHU2.260e-3745.45Short chain dehydrogenase n=1 Tax=Emiliania huxley... [more]
A0A848UI37_9ACTN8.390e-3439.60SDR family oxidoreductase n=1 Tax=Ilumatobacter sp... [more]
A0A6V1MI94_HETAK2.310e-3241.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A496R851_9SPIR3.170e-3142.47Short-chain dehydrogenase n=1 Tax=Spirochaetes bac... [more]
A0A6H5KWZ8_9PHAE1.570e-3060.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2K1QE66_9GAMM1.570e-2941.58Short-chain dehydrogenase n=4 Tax=Enterobacterales... [more]
B7G702_PHATC1.790e-2837.34Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
UPI0003B5FDC73.270e-2840.86SDR family oxidoreductase n=1 Tax=Leucothrix mucor... [more]
A0A3B9DKC5_9PROT3.810e-2841.14Short-chain dehydrogenase n=2 Tax=Alphaproteobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11040contigP-wetherbeei_contig11040:457..2223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTE4
Preferred nameTR-1
PFAMsPex14_N,adh_short,adh_short_C2
Model size699
Max annot lvl2759|Eukaryota
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.51e-51
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
EC1.1.1.206
Descriptionoxidation-reduction process
Cds size699
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185895.1447158-CDS-P-wetherbeei_contig11040:456..5641683185895.1447158-CDS-P-wetherbeei_contig11040:456..564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11040 457..564 -
1683185895.156906-CDS-P-wetherbeei_contig11040:893..9461683185895.156906-CDS-P-wetherbeei_contig11040:893..946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11040 894..946 -
1683185895.1699383-CDS-P-wetherbeei_contig11040:1244..14131683185895.1699383-CDS-P-wetherbeei_contig11040:1244..1413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11040 1245..1413 -
1683185895.1787918-CDS-P-wetherbeei_contig11040:1664..18601683185895.1787918-CDS-P-wetherbeei_contig11040:1664..1860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11040 1665..1860 -
1683185895.1866047-CDS-P-wetherbeei_contig11040:2050..22231683185895.1866047-CDS-P-wetherbeei_contig11040:2050..2223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11040 2051..2223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11040.2.2prot_P-wetherbeei_contig11040.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11040 457..2223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11040.2.2

>prot_P-wetherbeei_contig11040.2.2 ID=prot_P-wetherbeei_contig11040.2.2|Name=mRNA_P-wetherbeei_contig11040.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MVKQEAYMLPSDPKDRHPIGNGVASDAPQLSALDYSVKGRNFLITGATMG
LGHGITESLIRAGAAKVMITGRRADIGADAAQRLQRMSKETAIMFERADS
ASPEDCEKLAKAATEKLGEIHGLVNCAASTERNDMFSTTVDFWDQLMASN
VRGPFMMTQAVSRHMREKNIHGSIVNISSTVASYGGTPKTSTYSISKAAL
NGMTKIHAYELMRHRIRYGRLRMGDHEPLAGR*
back to top

mRNA from alignment at P-wetherbeei_contig11040:457..2223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11040.2.2 ID=mRNA_P-wetherbeei_contig11040.2.2|Name=mRNA_P-wetherbeei_contig11040.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1767bp|location=Sequence derived from alignment at P-wetherbeei_contig11040:457..2223- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAACAAGAAGCGTACATGCTGCCGAGTGATCCCAAGGACCGCCA CCCGATCGGGAATGGCGTGGCTTCCGACGCCCCCCAATTGAGCGCGCTCG ACTATTCCGTCAAAGGCCGCAACTTCCTCATCACTGGCGCGACCATGGGA CTCGGCCACGGCATCACAGAGAGGTAGATTTGCGCTGCGCTCCTTCTCGC TGTTCTTTTCCATCCGCTTTTTCAACAGACCTCTGCACGCTGCTCATAAA ACCTGGCAGAACATTTTCCAAGCTCACCTCACCGCTGCCTCATGGGCCCT ATTGATGCGGCCCGCAGGATCCTTACTCCCATCAAACCAAAACAAATGAA ACAAAATCCGCAGCTTGATTCGCGCCGGAGCCGCCAAAGTCATGATCACC GGGCGCCGCGCCGACATTGGCGCCGATGCGGCCCAGCGCCTGCAGCGGAT GAGCAAGGAGACGGCGATCATGTTCGAGCGGGCTGACAGCGCCTCGCCGG AGGACTGCGAGAAGCTCGCCAAGGCCGCCACGGAGAAGCTCGGAGAAATC CACGGCCTGGTGAGCGTTAAGCTCTCCCCAACGCAGCGTTTTGTCTGTTA TTGCCCTATCCGCTTTCCCGGATTGTGAATGCTTCTATCGCGCTTCTTTG TTTCTTCATGCAAACAGTTTGGACTCAAAGGCAGAAATTCCAACTTTATA AGAGAGAATCCACATCTTCGCCCTTGTGTTGTGTCGGCCTTGCACTCTGT TACGGCAGTCCGCGGACCTTTCCAACCGACCAAACGACCAACCGGCTGGT CGTTTTTCAGGTGAACTGCGCGGCGAGCACGGAACGCAACGACATGTTCT CCACGACGGTCGACTTCTGGGACCAGCTCATGGCCAGCAACGTCCGTGGG CCATTCATGATGACGCAAGCCGTCAGCCGCCACATGAGGGAGAAGAATAT CCATGGCAGCATCGTCAACATCAGCAGCAGTGAGATTGACGGCTGTAGAG AATGGCAAAAGTTTGGCTGGGCGGCGGAAGTGGCGGCCTTTGACTCGGCG GCTGCGCTCAAATGACTCTCTAGACTAGTGTTCCACTGCATGGATGAGAC GGCAATGCGGCCGCGCTCTTGAACAAATGATCCGTACCGTTGCCGTGGGC GGCGGGCTGCACTCGTGGTCGGCGGCACAAGAACTGATCCATTGCTGGGA AAAATGCCTGTGGAAGTTCCGTGAGACTCACCTGCCCGCCTGCTCTCCTG TTGGCCCGCTGCCGGCGGCTCTCCCAGCAGTCGCCTCGTACGGCGGGACA CCCAAGACGAGCACTTACTCCATCTCCAAGGTATTCTGTTTTCCTCTCTG CACACAGTTTTTGGGTTTTAATGGAGTGGGGTTTCAAGTCACGTGGGATT CACCCCCACGGAGAGAGTCGGATCTGTGCCTATTGCGCCGCTTCTCGTGT CATTGAGTAGGCCGATCAGCTGTGGATGCGTGTGCAGCTCCGAGAGGGAT TCGGACATCAGTCTTCGCGCAAATTTTCATTTCGTGGAGCGGCACGGGCG GCGCCCGCCTCTGCGCTTATGTTTGCTATCTCCTGGCGACGGAAGGAGGG GACGCCGGACTTTCAACTTCTACGCATTTCCCGCCTTTCTATTATCGGCT GCGACGCAGGCCGCCCTGAACGGCATGACAAAGATCCACGCTTATGAGCT CATGCGCCACCGAATCCGGTACGGGCGCTTGAGGATGGGTGACCATGAAC CGCTCGCTGGCCGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11040:457..2223-

>mRNA_P-wetherbeei_contig11040.2.2 ID=mRNA_P-wetherbeei_contig11040.2.2|Name=mRNA_P-wetherbeei_contig11040.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig11040:457..2223- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAACAAGAAGCGTACATGCTGCCGAGTGATCCCAAGGACCGCCA
CCCGATCGGGAATGGCGTGGCTTCCGACGCCCCCCAATTGAGCGCGCTCG
ACTATTCCGTCAAAGGCCGCAACTTCCTCATCACTGGCGCGACCATGGGA
CTCGGCCACGGCATCACAGAGAGCTTGATTCGCGCCGGAGCCGCCAAAGT
CATGATCACCGGGCGCCGCGCCGACATTGGCGCCGATGCGGCCCAGCGCC
TGCAGCGGATGAGCAAGGAGACGGCGATCATGTTCGAGCGGGCTGACAGC
GCCTCGCCGGAGGACTGCGAGAAGCTCGCCAAGGCCGCCACGGAGAAGCT
CGGAGAAATCCACGGCCTGGTGAACTGCGCGGCGAGCACGGAACGCAACG
ACATGTTCTCCACGACGGTCGACTTCTGGGACCAGCTCATGGCCAGCAAC
GTCCGTGGGCCATTCATGATGACGCAAGCCGTCAGCCGCCACATGAGGGA
GAAGAATATCCATGGCAGCATCGTCAACATCAGCAGCACAGTCGCCTCGT
ACGGCGGGACACCCAAGACGAGCACTTACTCCATCTCCAAGGCCGCCCTG
AACGGCATGACAAAGATCCACGCTTATGAGCTCATGCGCCACCGAATCCG
GTACGGGCGCTTGAGGATGGGTGACCATGAACCGCTCGCTGGCCGCTGA
back to top