mRNA_P-wetherbeei_contig1103.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1103.2.1
Unique NamemRNA_P-wetherbeei_contig1103.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1103.2.1 vs. uniprot
Match: D8LC83_ECTSI (Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC83_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.150e-15
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  175 IQKEPMYLLWPLYVALILRLALAGDRPPPG---STERVEGLLRKMSIEDKAGQMTQMDLTGFVDVATGALNEDKLRRTLDTARVGSLFDTPYAGGGG 456
            ++   M+ +W LY+ L + L L     P G   S+ RVE LL KM++EDK GQMTQ+D+  FVD  TG L+E KL   +   R+GSLF+TP+AG  G
Sbjct:    9 VRNALMWAMWSLYICLAMALTLGRSDGPSGQGFSSLRVENLLSKMTLEDKVGQMTQVDIGMFVDPETGVLDEQKLTVFVTRYRIGSLFNTPFAGHSG 105
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BLAST of mRNA_P-wetherbeei_contig1103.2.1 vs. uniprot
Match: A0A4D9DEX2_9STRA (Fn3_like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEX2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.000e-6
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  265 STERVEGLLRKMSIEDKAGQMTQMDLTGFVDVATGALNEDKLRRTLDTARVGSLFDTPYAG 447
            S+ERVE L++ +S++DKAGQMT++DL   +D +   ++E K+R+ +   R+GS  ++P AG
Sbjct:   27 SSERVEKLVKSLSLKDKAGQMTELDLAVAMDWSQKTVDETKVRKLIRDYRIGSFLNSPLAG 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1103.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC83_ECTSI4.150e-1546.39Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus si... [more]
A0A4D9DEX2_9STRA4.000e-642.62Fn3_like domain-containing protein n=2 Tax=Monodop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1103contigP-wetherbeei_contig1103:3066..4026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC83
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C
Model size847
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K05349
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0000272,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005886,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0015926,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:1901575
Exons2
Evalue1.19e-17
EggNOG OGsCOG1472@1|root,2QQ55@2759|Eukaryota
EC3.2.1.21
Descriptionxylan 1,4-beta-xylosidase activity
Cds size354
COG categoryG
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.6102853-UTR-P-wetherbeei_contig1103:3065..34201683185894.6102853-UTR-P-wetherbeei_contig1103:3065..3420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1103 3066..3420 -
1683185894.6376896-UTR-P-wetherbeei_contig1103:3888..40261683185894.6376896-UTR-P-wetherbeei_contig1103:3888..4026Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1103 3889..4026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.6209927-CDS-P-wetherbeei_contig1103:3420..36101683185894.6209927-CDS-P-wetherbeei_contig1103:3420..3610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1103 3421..3610 -
1683185894.6294756-CDS-P-wetherbeei_contig1103:3724..38881683185894.6294756-CDS-P-wetherbeei_contig1103:3724..3888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1103 3725..3888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1103.2.1prot_P-wetherbeei_contig1103.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1103 3421..3888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1103.2.1

>prot_P-wetherbeei_contig1103.2.1 ID=prot_P-wetherbeei_contig1103.2.1|Name=mRNA_P-wetherbeei_contig1103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MSLFPLATLKRAIQKEPMYLLWPLYVALILRLALAGDRPPPGSTERVEGL
LRKMSIEDKAGQMTQMDLTGFVDVATGALNEDKLRRTLDTARVGSLFDTP
YAGGGGPPGGLSAPKVS*
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mRNA from alignment at P-wetherbeei_contig1103:3066..4026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1103.2.1 ID=mRNA_P-wetherbeei_contig1103.2.1|Name=mRNA_P-wetherbeei_contig1103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=961bp|location=Sequence derived from alignment at P-wetherbeei_contig1103:3066..4026- (Phaeothamnion wetherbeei SAG_119_79)
CGTCAGATTTTCCGGTGGTCATTGCGCCCGCGGCGTTTCTTCGCAACACG
GGCCACAAGTGCCACCGTCTCCAGAGTGCCGAAAGAATCTGACCGGAGGA
CCGCGGTCTGAGAGCGCCTCCCTGCGAATGAGACGTGCATGTCCTTATTT
CCCCTAGCGACATTGAAACGGGCGATACAGAAGGAACCGATGTATCTTTT
GTGGCCGCTTTATGTTGCGTTGATCCTGCGCCTGGCGTTGGCTGGCGACC
GTCCACCGCCTGGCTCCACGGAGCGCGTCGAAGGTCTGCTTCGGAAAATG
AGGTTTGTCTGCGTTGTTTCACCGTGTTTGCCCATCCTTTCCCTGCATAA
TCCCTTTTCTCCACCCTCTTCTGATACGCTTTCCTCTTTCCTCTTGTTTC
ATCTAAAAACCGCCAGCATCGAGGACAAGGCCGGCCAGATGACGCAGATG
GACCTGACGGGCTTCGTTGACGTGGCGACAGGGGCGCTGAACGAGGACAA
GCTGCGGCGGACACTCGACACGGCGCGGGTTGGCAGCCTCTTTGACACGC
CGTATGCCGGAGGCGGAGGGCCGCCGGGCGGCTTGTCGGCCCCCAAGGTC
AGTTAGCTCGGGCAATGGAATTGCGGCATGGCACCGGAAAGCGAATTCTG
CACAGCAGGAAAAATCGTTTTTATGTCTCGAGTGACGCAACTTTTCCCGG
TGCGTAGTCTTAATCGGGGTGATTTTGGTACGTGATCAAGGCTTGGTTGG
GTTGGTGAGCGGCTTCCTTCTTCATACTAAGAAGTTCGTCACCTAGCTAT
GCCCGCGTTTGTGAAGCGGAATTATCCGTCTCCAGCATCGCCTTTCACCC
CCCAACCAACATCACCCAACTGCCGACAAGTATCATCCTTGCCCTGGAAC
TGTCATCGTGGTCTCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGTTG
TCAATGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1103:3066..4026-

>mRNA_P-wetherbeei_contig1103.2.1 ID=mRNA_P-wetherbeei_contig1103.2.1|Name=mRNA_P-wetherbeei_contig1103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig1103:3066..4026- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTTATTTCCCCTAGCGACATTGAAACGGGCGATACAGAAGGAACC
GATGTATCTTTTGTGGCCGCTTTATGTTGCGTTGATCCTGCGCCTGGCGT
TGGCTGGCGACCGTCCACCGCCTGGCTCCACGGAGCGCGTCGAAGGTCTG
CTTCGGAAAATGAGCATCGAGGACAAGGCCGGCCAGATGACGCAGATGGA
CCTGACGGGCTTCGTTGACGTGGCGACAGGGGCGCTGAACGAGGACAAGC
TGCGGCGGACACTCGACACGGCGCGGGTTGGCAGCCTCTTTGACACGCCG
TATGCCGGAGGCGGAGGGCCGCCGGGCGGCTTGTCGGCCCCCAAGGTCAG
TTAG
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