mRNA_P-wetherbeei_contig11022.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11022.1.1
Unique NamemRNA_P-wetherbeei_contig11022.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A6N7H5G8_9HYPH (Transposase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H5G8_9HYPH)

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-13
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   19 EVRRKLCSRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            E  RK   RRR G+S   RS+AVQ FWAMH+EAM WSG+ +R+YAAGL LSPYS R
Sbjct:   81 EKARKKRQRRRFGVSTDTRSRAVQAFWAMHVEAMNWSGMGVREYAAGLWLSPYSLR 136          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A439W915_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A439W915_9HYPH)

HSP 1 Score: 67.8 bits (164), Expect = 6.340e-12
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   25 RRKLCSRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            R+K  +RRR  +S   R++ VQ FWAMH+EAM WSG+ +R+YAA LHLSPYS R
Sbjct:   78 RQKKGTRRRFAISTDVRNRGVQAFWAMHVEAMNWSGMGVREYAAALHLSPYSLR 131          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A7W3KYH8_9HYPH (Uncharacterized protein n=1 Tax=Aminobacter ciceronei TaxID=150723 RepID=A0A7W3KYH8_9HYPH)

HSP 1 Score: 64.3 bits (155), Expect = 8.420e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   43 RRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            R+R G+S   R++A++ FWAMH+EAM WSG+ +R+YAA LHLSPY+ R
Sbjct:   34 RQRFGVSTDVRNRALRAFWAMHVEAMNWSGMGVREYAAALHLSPYALR 81          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A6N7GX19_9HYPH (Transposase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GX19_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   43 RRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYS 180
            RRR  +S   RS+AVQ FWAMH+EAM WSG+S+RDYAAGL LSP S
Sbjct:   58 RRRYAVSTDMRSRAVQAFWAMHVEAMNWSGMSVRDYAAGLQLSPTS 103          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A7W3KUP2_9HYPH (Transposase-like protein n=6 Tax=Aminobacter TaxID=31988 RepID=A0A7W3KUP2_9HYPH)

HSP 1 Score: 65.9 bits (159), Expect = 3.160e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   43 RRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            R+R G+S   R++A+Q FWAMH+EAM WSG+ +R+YAA LHLSPY+ R
Sbjct:   84 RQRFGVSTDVRNRALQAFWAMHVEAMNWSGMGVREYAAALHLSPYALR 131          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: UPI0010A95662 (transposase n=1 Tax=Mesorhizobium TaxID=68287 RepID=UPI0010A95662)

HSP 1 Score: 65.9 bits (159), Expect = 3.370e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   40 SRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYS 180
            +R R  +S   RS+AVQ FWAMH+EAM WSG+ +R+YAA LHLSPYS
Sbjct:   83 ARLRYAVSTDMRSRAVQAFWAMHVEAMNWSGMGVREYAAALHLSPYS 129          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: UPI001BDC1688 (transposase n=1 Tax=Aminobacter anthyllidis TaxID=1035067 RepID=UPI001BDC1688)

HSP 1 Score: 64.3 bits (155), Expect = 8.060e-11
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   43 RRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            R+R G+S   R++A++ FWAMH+EAM WSG+ +R+YAA LHLSPY+ R
Sbjct:   34 RQRFGVSTDVRNRALRAFWAMHVEAMNWSGMGVREYAAALHLSPYALR 81          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: UPI001FF00C39 (transposase n=1 Tax=Mesorhizobium sp. B3-1-9 TaxID=2589892 RepID=UPI001FF00C39)

HSP 1 Score: 64.7 bits (156), Expect = 8.420e-11
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   40 SRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            +RRR  +S   R++AVQ FWAMH+EAM WSG+ IR+YAA LHLSP S R
Sbjct:   81 ARRRFAVSTDVRNRAVQAFWAMHVEAMNWSGMGIREYAAALHLSPTSLR 129          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: A0A3S1ZY27_9HYPH (Uncharacterized protein n=2 Tax=Mesorhizobium TaxID=68287 RepID=A0A3S1ZY27_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-10
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 QREVDAEV-RRKLCSRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            Q+ ++A+  RRK  +R R  +S   R++AVQ +WAMH+EAM WSG+ +R+YAA LHLSP S R
Sbjct:   69 QKRLEAQAKRRKKRARLRFAVSTDVRNRAVQAYWAMHVEAMNWSGMGVREYAAALHLSPTSLR 131          
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Match: UPI00124EC808 (transposase n=1 Tax=Brucella anthropi TaxID=529 RepID=UPI00124EC808)

HSP 1 Score: 63.5 bits (153), Expect = 2.250e-10
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   19 EVRRKLCSRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDYAAGLHLSPYSRR 186
            E RRK  +RRR  +S  +R++ +Q FWAMHIEAM WSG+ +R+YAA L LSP S R
Sbjct:   76 ENRRKKRARRRFSVSTDERNRGLQAFWAMHIEAMNWSGMGVREYAASLQLSPTSLR 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7H5G8_9HYPH3.700e-1364.29Transposase n=1 Tax=Hyphomicrobiales bacterium Tax... [more]
A0A439W915_9HYPH6.340e-1259.26Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
A0A7W3KYH8_9HYPH8.420e-1258.33Uncharacterized protein n=1 Tax=Aminobacter cicero... [more]
A0A6N7GX19_9HYPH1.070e-1169.57Transposase n=1 Tax=Hyphomicrobiales bacterium Tax... [more]
A0A7W3KUP2_9HYPH3.160e-1160.42Transposase-like protein n=6 Tax=Aminobacter TaxID... [more]
UPI0010A956623.370e-1163.83transposase n=1 Tax=Mesorhizobium TaxID=68287 RepI... [more]
UPI001BDC16888.060e-1158.33transposase n=1 Tax=Aminobacter anthyllidis TaxID=... [more]
UPI001FF00C398.420e-1163.27transposase n=1 Tax=Mesorhizobium sp. B3-1-9 TaxID... [more]
A0A3S1ZY27_9HYPH1.630e-1052.38Uncharacterized protein n=2 Tax=Mesorhizobium TaxI... [more]
UPI00124EC8082.250e-1057.14transposase n=1 Tax=Brucella anthropi TaxID=529 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11022contigP-wetherbeei_contig11022:6..191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1150626.PHAMO_470081
PFAMsHTH_Tnp_1
Model size186
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.71e-08
EggNOG OGsCOG2963@1|root,COG2963@2|Bacteria,1REYH@1224|Proteobacteria,2U7BX@28211|Alphaproteobacteria
Descriptiontransposase activity
Cds size186
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.4688368-CDS-P-wetherbeei_contig11022:5..1911683185894.4688368-CDS-P-wetherbeei_contig11022:5..191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11022 6..191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11022.1.1prot_P-wetherbeei_contig11022.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11022 6..191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11022.1.1

>prot_P-wetherbeei_contig11022.1.1 ID=prot_P-wetherbeei_contig11022.1.1|Name=mRNA_P-wetherbeei_contig11022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
QREVDAEVRRKLCSRRRKGLSHIKRSQAVQTFWAMHIEAMVWSGLSIRDY
AAGLHLSPYSRR
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mRNA from alignment at P-wetherbeei_contig11022:6..191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11022.1.1 ID=mRNA_P-wetherbeei_contig11022.1.1|Name=mRNA_P-wetherbeei_contig11022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig11022:6..191+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCGAAGTGGACGCCGAAGTGCGGCGCAAACTTTGTTCCCGCAGGCG CAAAGGGCTGTCGCATATCAAGCGCAGTCAGGCCGTTCAGACGTTCTGGG CGATGCACATCGAAGCGATGGTCTGGAGTGGTTTGAGCATCCGCGACTAT GCGGCCGGGCTCCATCTGTCGCCGTACAGCCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11022:6..191+

>mRNA_P-wetherbeei_contig11022.1.1 ID=mRNA_P-wetherbeei_contig11022.1.1|Name=mRNA_P-wetherbeei_contig11022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig11022:6..191+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCGAAGTGGACGCCGAAGTGCGGCGCAAACTTTGTTCCCGCAGGCG
CAAAGGGCTGTCGCATATCAAGCGCAGTCAGGCCGTTCAGACGTTCTGGG
CGATGCACATCGAAGCGATGGTCTGGAGTGGTTTGAGCATCCGCGACTAT
GCGGCCGGGCTCCATCTGTCGCCGTACAGCCGCCGC
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