mRNA_P-wetherbeei_contig1101.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1101.4.1
Unique NamemRNA_P-wetherbeei_contig1101.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A836CIT0_9STRA (2',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.090e-34
Identity = 72/185 (38.92%), Postives = 105/185 (56.76%), Query Frame = 1
Query:   10 YATPSFVGHSLWLCPS-PNSDLFTNLIQEIATACKTPVFPPHVTLLAGASLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEG--AVIGCSF-------EVEALEVWCTQGRVEEWRQVARLPFT 534
            YA+ +FVGHSLWL P+ P  D    ++ EI+    +P F PH TLLAG    E +++ + R LA ++    + +  VA+K LYFQ VFAL+   +  ++    A EAF   E     +MPH+SL YGD+DD T+  I+ D +   A  G S         ++ +EVW T+G VEEWR+ A +P +
Sbjct:    2 YASKTFVGHSLWLLPAQPALDALQEVVMEISVKRHSPCFKPHCTLLAGLPESEEEVIRKTRDLALRVAATPMTIDRVATKQLYFQSVFALIKAKDEAMNLHATAVEAFGVPEGGA-PYMPHISLFYGDVDDKTRSAIKDDAQALLAARGMSLGSPESELSMDTIEVWNTEGPVEEWRRCAVVPLS 185          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A1E7F0G3_9STRA (LigT-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.180e-29
Identity = 66/194 (34.02%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   10 YATPSFVGHSLWLCPSPNSDL-FTNLIQEIATACKTPVFPPHVTLLAGASLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQ----------------IRADVEG-AVIGCSFEVEALEVWCTQGRVEEWRQVARLPFTG 537
            Y + SF+GHSLW  P  +S + + +LI + +   +T  F PH+TL+A     E  +  R + LA+ L P T +  +++  D YF+CV+A + + E++++   LA + F E+  D + ++PH+SL YGD DD  K+                 +R + +G A    S +V+A+EVW T+G V+EW +V  +P TG
Sbjct:    8 YKSSSFIGHSLWFVPCGDSKIAYESLITDASKNLETFRFIPHITLVAALLDGEIDVCVRTKKLASTLAPFTFEFDQLSHGDAYFKCVYAQMKRTETVVAANALARQFFPERSSDPD-YIPHMSLVYGDFDDTIKQHHIIPTLENSMMEDQDGVRNNSKGIAAAIASIQVDAIEVWSTEGDVKEWYKVETVPLTG 200          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A0L0HFE1_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HFE1_SPIPD)

HSP 1 Score: 106 bits (264), Expect = 1.000e-25
Identity = 58/172 (33.72%), Postives = 95/172 (55.23%), Query Frame = 1
Query:   28 VGHSLWLCPSPNS--DLFTNLIQEIATACKTPVFPPHVTLLAGASLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADV--EGAVIGCSFEVEALEVWCTQGRVEEWRQVARLPF 531
            V +SLWLCPS  +       +I   +    TP + PH+TLL G +  +  ++   R +A       + ++++A+KDLY+QCV A+    + L+     A + FE+++  L  F PHLSL YGD+D   KR+I  +V  E  V+G   +V+++++W T G  E+W  +A  P 
Sbjct:    4 VVYSLWLCPSEPTVQSYLKKVIDTFSDRLDTPKWNPHITLLGGINTSKEDVIALTRKVADAGANFNVTLSDIATKDLYYQCVMAVPHPSDPLIELNTTARKVFEKEDQPL--FWPHLSLIYGDLDKELKREIAEEVKKEFNVVGQIVDVKSIQIWSTTGSPEKWEFIAETPL 173          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A5D6XK14_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK14_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.340e-22
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1
Query:   34 HSLWLCPSPNSDL-FTNLIQEIATACKTPVFPPHVTLLAGAS-LPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGCS-FEVEALEVWCTQGRVEEWRQVARL 525
            +SLW  P P ++     +I   A   +TP F PH+TLL G S + E   +++ + LA  +     ++ +VASKDLYFQCVF LL   + L       ++A+   + D   FMPH+SL YG++++ATK ++ A +       +  +++ L++W T G V  W  VA  
Sbjct:    9 YSLWAAPEPQAERGIAEMIHASAQRLQTPSFLPHMTLLGGISGVNEADAVEKTKQLAEAMHVLAPEIRKVASKDLYFQCVFLLLQLSDEL-------ADAYRAAKQDNVEFMPHISLVYGELNEATKEEVVAALNPHFDSSAPVKLDRLQLWNTTGAVGAWTLVAEF 168          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A2D4BSY2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSY2_PYTIN)

HSP 1 Score: 93.2 bits (230), Expect = 8.270e-19
Identity = 57/176 (32.39%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   10 YATPSFVGHSLWLCPSPNS-DLFTNLIQEIATACKTPVFPPHVTLLAGAS-LPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGCSFEVEALEVWCTQGRVEEWRQVARLPF 531
            YA+P FVG+SLWL P   + D+  ++++E A   +TP F PH+TLL   + + E    +  + +A +L+   L+++ VASK                 L  RR        QE D   FMPHLSL YGD+ +  ++ ++ ++   + G    + +L++W T G V+ W  VA LP 
Sbjct:  442 YASPEFVGYSLWLVPDGEAHDVLHDVVREYAARLQTPPFLPHITLLGAVTEMTEAAATETTQRIAERLRAMDLEISVVASK-----------------LFDRR--------QEPD---FMPHLSLVYGDLGEQQRQDLKRELGPRIDGMRLHISSLQLWNTSGPVKNWAMVADLPL 589          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A7Z8PBR3_9BACT (2'-5' RNA ligase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Z8PBR3_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 2.440e-17
Identity = 55/173 (31.79%), Postives = 84/173 (48.55%), Query Frame = 1
Query:   34 HSLWLCPSPNSD-----LFTNLIQEIATACKTPVFPPHVTLLAGASLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGCSFEVEALEVWCTQGRVEEWRQVARLPFTG 537
            +++WL P P +        T L Q++A     P FPPH+TL +G +  E QL+D  R LA    P  L+   +     +F+ +   +     LLS+R  A + F      +  F PHLSLAYG++D+     +R  +E      +  ++   +W  QG V  WRQVA +  TG
Sbjct:   14 YAIWLNPDPQAQEALLPQMTALRQDLAG----PAFPPHLTLTSGIAGIEEQLVDHLRVLAENQAPFRLQPRGIQVSGDFFRAITVAVDSPPQLLSFRSQACQRFGLDA--MRPFHPHLSLAYGEVDNERLHHLRRHLETRSWP-NLHIQRCSLWRLQGPVSNWRQVADVGLTG 179          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A1Y1IM29_KLENI (Uncharacterized protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM29_KLENI)

HSP 1 Score: 84.3 bits (207), Expect = 4.380e-17
Identity = 51/161 (31.68%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   82 LIQEIATACKTPVFPPHVTLLAGAS--LPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGA----VIGCSFEVEALEVWCTQGR---VEEWRQVARLPFTG 537
            LI ++++   TP F PHVT+L G    L + Q+L R R LAA++ P   +V +VA    YFQ V+  + KD  +L+    +   F+       A+MPH+SL YGD+ +  + Q+   V G     ++   F V +  ++ T      ++ W +VA  P +G
Sbjct:   28 LIADLSSQHGTPPFSPHVTVLGGFGDQLDQDQVLARTRALAAQVAPYRCRVADVACGSSYFQMVYLRMHKDAPVLNAHAASVSCFQVAPSSKPAYMPHMSLLYGDLANEVREQVVEAVAGQHKDLLVDTEFLVRSFHLYRTDPTDLLMKTWEEVAVFPLSG 188          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A0F9CS41_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9CS41_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 1.550e-16
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   73 FTNLIQEIATACK-TPVFPPHVTLLAGASLPEGQLLDRCRGLAAKLQPATLKVTEVAS-KDLYFQCVFALLAKDESLLSWRRLASEAF---EEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGCSFEVEALEVWCTQGRVEEW 507
            F +LI+ +A     +P+F  H+TLL G    E  LL     LA  +QP  +++  +A  +D +++C++      E LL  R+ A   F     +  +  AFMPHLS+ YG ID+   RQ+  +  G+ +GC+F  E++ ++ T G   EW
Sbjct:    3 FNSLIEALAREHPPSPLFASHITLLGGIRGAEDDLLQGLNELAGAIQPFQVRLEGLAGHEDSFYRCLYLRAEPSEELLRARKEAERIFTRFRNEASEGEAFMPHLSILYGRIDNEA-RQMMINSLGSALGCNFRAESVSLYRTDGAPAEW 151          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A316VG84_9BASI (2, 3 cyclic phosphodiesterase n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VG84_9BASI)

HSP 1 Score: 82.0 bits (201), Expect = 5.840e-16
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   10 YATPSFVGHSLWLCPSPNSDL------FTNLIQEIATACKTPVFPPHVTLLAGASLPEGQLLDRC----RGLAAKLQPAT-----LKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVE---------------GAVIGCS---------FEVEALEVWCTQGRVEEWRQVARL 525
            Y+  +F G+SLWL P+   ++        ++ Q++      P F PHVTLL+G +  +G   D+     +G   +    T     LK+ EV ++ LYFQC+   L K   LLS      +AF     D   + PH SL YG +   TK Q++  ++               G   G S          E+ A+E+W T G V +W++V R+
Sbjct:    8 YSQSTFTGYSLWLVPTRQEEVNILKDGMQHIRQQVHADISAP-FEPHVTLLSGLNEEDGWTADKIWHAFKGAGQRWASNTKGVLSLKLEEVTTRGLYFQCILIALEKTSELLSINAYMRDAFNAH--DQPPYFPHCSLLYGHL---TKEQMQQTIQSLKQGDRPLYHETGKGIAFGISDSGKNPIKQIELGAVELWNTNGSVADWKRVHRI 212          
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Match: A0A1G2HQN0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_39_25 TaxID=1802202 RepID=A0A1G2HQN0_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 2.760e-15
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = 1
Query:   28 VGHSLWLCPSPNSDLFTNL---IQEIATACKTPVFPPHVTLLAGA-SLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLLSWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGCSFEVEALEVWCTQGRVEEWRQVARLPF 531
            +G+ L+  P    +LF +L   I  +A       F PH+TLLA      E +L+ + + LAA +QP  ++  E+  +D YF+ ++     +  +  + + A E F  Q  D+NA+MPHLSL YG++  + K ++ A +        F V+ + ++ T+G  ++W Q+   P 
Sbjct:   10 IGYHLFFLPQ--GELFDSLQSTINTLAEKYSGVKFEPHLTLLARIPKAEEAELVAKTQQLAATMQPFEVEPKEILIEDAYFRALYCKAEPNAKMEEYHQKALEMFGVQ--DVNAYMPHLSLYYGNVPQSIKEKMIASLS-LPASMKFLVDKVYLYRTEGEAQDWMQIGGYPL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1101.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIT0_9STRA2.090e-3438.922',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 T... [more]
A0A1E7F0G3_9STRA4.180e-2934.02LigT-like protein n=1 Tax=Fragilariopsis cylindrus... [more]
A0A0L0HFE1_SPIPD1.000e-2533.72Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A5D6XK14_9STRA1.340e-2234.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BSY2_PYTIN8.270e-1932.39Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7Z8PBR3_9BACT2.440e-1731.792'-5' RNA ligase family protein n=1 Tax=Planctomyc... [more]
A0A1Y1IM29_KLENI4.380e-1731.68Uncharacterized protein (Fragment) n=1 Tax=Klebsor... [more]
A0A0F9CS41_9ZZZZ1.550e-1632.67Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A316VG84_9BASI5.840e-1628.912, 3 cyclic phosphodiesterase n=1 Tax=Meira milton... [more]
A0A1G2HQN0_9BACT2.760e-1529.07Uncharacterized protein n=1 Tax=Candidatus Staskaw... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1101contigP-wetherbeei_contig1101:7175..7857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000020956
PFAMsCPDase
Model size543
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.17e-26
EggNOG OGs297VK@1|root,2REVW@2759|Eukaryota,1MI8P@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000835.1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.237024-CDS-P-wetherbeei_contig1101:7174..73971683185894.237024-CDS-P-wetherbeei_contig1101:7174..7397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1101 7175..7397 -
1683185894.2491577-CDS-P-wetherbeei_contig1101:7537..78571683185894.2491577-CDS-P-wetherbeei_contig1101:7537..7857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1101 7538..7857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1101.4.1prot_P-wetherbeei_contig1101.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1101 7175..7857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1101.4.1

>prot_P-wetherbeei_contig1101.4.1 ID=prot_P-wetherbeei_contig1101.4.1|Name=mRNA_P-wetherbeei_contig1101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MVSYATPSFVGHSLWLCPSPNSDLFTNLIQEIATACKTPVFPPHVTLLAG
ASLPEGQLLDRCRGLAAKLQPATLKVTEVASKDLYFQCVFALLAKDESLL
SWRRLASEAFEEQECDLNAFMPHLSLAYGDIDDATKRQIRADVEGAVIGC
SFEVEALEVWCTQGRVEEWRQVARLPFTGS*
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mRNA from alignment at P-wetherbeei_contig1101:7175..7857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1101.4.1 ID=mRNA_P-wetherbeei_contig1101.4.1|Name=mRNA_P-wetherbeei_contig1101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=683bp|location=Sequence derived from alignment at P-wetherbeei_contig1101:7175..7857- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATCCTACGCCACTCCATCATTCGTCGGCCACTCATTGTGGCTGTG CCCGAGCCCCAACAGCGACCTCTTTACGAATCTGATCCAGGAAATCGCCA CCGCTTGCAAGACGCCGGTGTTTCCGCCTCACGTGACGCTCTTGGCTGGC GCCAGCCTACCTGAGGGTCAGTTGCTTGATCGGTGCCGCGGTTTGGCCGC CAAACTCCAGCCTGCGACGCTGAAAGTGACTGAGGTAGCTTCGAAAGACC TCTATTTCCAGTGCGTCTTCGCTCTTTTGGCGAAGGACGAGTCATTACTT TCATGGCGGCGCCTCGCGAGGTAAGGCACAAAGTCGAGTGTATTAAGCTT TTAAGATCCCTGTATTCCAAGGCGCTCTTTACGCGCCGGACGCGAAGAGA AAGAATTGTGGGCATGCAACACCTCCTTCCCTTTCCTTCTCCTTTCGCTT CTATCGGCAGCGAAGCTTTTGAAGAACAAGAGTGTGACCTCAACGCGTTT ATGCCACACCTCAGCCTCGCCTACGGAGACATCGACGACGCGACGAAGCG GCAGATCCGGGCGGACGTCGAAGGCGCCGTCATCGGCTGCAGCTTCGAGG TGGAAGCTCTGGAGGTCTGGTGCACGCAGGGCCGCGTGGAGGAGTGGCGG CAGGTGGCGAGGCTGCCGTTCACGGGATCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1101:7175..7857-

>mRNA_P-wetherbeei_contig1101.4.1 ID=mRNA_P-wetherbeei_contig1101.4.1|Name=mRNA_P-wetherbeei_contig1101.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1101:7175..7857- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATCCTACGCCACTCCATCATTCGTCGGCCACTCATTGTGGCTGTG
CCCGAGCCCCAACAGCGACCTCTTTACGAATCTGATCCAGGAAATCGCCA
CCGCTTGCAAGACGCCGGTGTTTCCGCCTCACGTGACGCTCTTGGCTGGC
GCCAGCCTACCTGAGGGTCAGTTGCTTGATCGGTGCCGCGGTTTGGCCGC
CAAACTCCAGCCTGCGACGCTGAAAGTGACTGAGGTAGCTTCGAAAGACC
TCTATTTCCAGTGCGTCTTCGCTCTTTTGGCGAAGGACGAGTCATTACTT
TCATGGCGGCGCCTCGCGAGCGAAGCTTTTGAAGAACAAGAGTGTGACCT
CAACGCGTTTATGCCACACCTCAGCCTCGCCTACGGAGACATCGACGACG
CGACGAAGCGGCAGATCCGGGCGGACGTCGAAGGCGCCGTCATCGGCTGC
AGCTTCGAGGTGGAAGCTCTGGAGGTCTGGTGCACGCAGGGCCGCGTGGA
GGAGTGGCGGCAGGTGGCGAGGCTGCCGTTCACGGGATCCTGA
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