mRNA_P-wetherbeei_contig1101.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1101.2.1
Unique NamemRNA_P-wetherbeei_contig1101.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1101.2.1 vs. uniprot
Match: A0A2V0PHT3_9CHLO (Castor_Poll_mid domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHT3_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 3.770e-6
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 2 
Query:   11 LRQLALAKREGRFGSAGPVCGLGMGIGGRNKPVVVLAPRPKEEMDRDIAVGLSGEYEKCGLTVLTRNGRPSRVEDLDLVSAGSAQRCIVLRPE 289
            LRQ+A+A  + R G+ G   GL         PVVVLA R K+EMDR++   + G      L V+TR+G  +R+EDL   + GSA   ++  PE
Sbjct:  246 LRQIAVA--QSRAGAGGAPFGL---------PVVVLADRDKDEMDREVHDAVGGR-----LAVITRSGSSTRLEDLRRAAVGSAGTVLLQYPE 322
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BLAST of mRNA_P-wetherbeei_contig1101.2.1 vs. uniprot
Match: A0A7J7Q170_9CHLO (Castor_Poll_mid domain-containing protein (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q170_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 8.390e-5
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:  101 KPVVVLAPRPKEEMDRDIAVGLSG-EYEKCGLTVLTRNGRPSRVEDLDLVSAGSAQRCIVLRPE 289
            +PVVVLA RPK EMD  +   + G ++E     V  R+GRPSR  DL  V+A SA   ++L+PE
Sbjct:  162 RPVVVLADRPKAEMDAVVLATMKGLKFE-----VFLRSGRPSRQPDLQRVAAVSAGTVLLLQPE 220
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BLAST of mRNA_P-wetherbeei_contig1101.2.1 vs. uniprot
Match: A0A383WMD1_TETOB (Castor_Poll_mid domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WMD1_TETOB)

HSP 1 Score: 50.1 bits (118), Expect = 8.540e-5
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:  101 KPVVVLAPRPKEEMDRDIAVGLSG-EYEKCGLTVLTRNGRPSRVEDLDLVSAGSAQRCIVLRPE 289
            +PVVVLA RPK EMD  +   + G ++E     V  R+GRPSR  DL  V+A +A   ++L+PE
Sbjct:  162 RPVVVLADRPKAEMDAVVLTTMKGLKFE-----VFLRSGRPSRQPDLQRVAAAAAGTVLLLQPE 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1101.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V0PHT3_9CHLO3.770e-639.78Castor_Poll_mid domain-containing protein n=1 Tax=... [more]
A0A7J7Q170_9CHLO8.390e-546.88Castor_Poll_mid domain-containing protein (Fragmen... [more]
A0A383WMD1_TETOB8.540e-545.31Castor_Poll_mid domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1101contigP-wetherbeei_contig1101:1163..2010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.1576784-CDS-P-wetherbeei_contig1101:1162..12671683185894.1576784-CDS-P-wetherbeei_contig1101:1162..1267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1101 1163..1267 -
1683185894.1683884-CDS-P-wetherbeei_contig1101:1800..20101683185894.1683884-CDS-P-wetherbeei_contig1101:1800..2010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1101 1801..2010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1101.2.1prot_P-wetherbeei_contig1101.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1101 1163..2010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1101.2.1

>prot_P-wetherbeei_contig1101.2.1 ID=prot_P-wetherbeei_contig1101.2.1|Name=mRNA_P-wetherbeei_contig1101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
GADPPPAGAREARGALRQCGPRLRARHGNRRAEQAGGGAGTQTEGGDGPG
HRRRIVGRVREVRPDSADTERTTVSGGGPGPRVGGERAALHRAATRARRH
GPCR*
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mRNA from alignment at P-wetherbeei_contig1101:1163..2010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1101.2.1 ID=mRNA_P-wetherbeei_contig1101.2.1|Name=mRNA_P-wetherbeei_contig1101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=848bp|location=Sequence derived from alignment at P-wetherbeei_contig1101:1163..2010- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCGATCCTCCGCCAGCTGGCGCTCGCGAAGCGAGAGGGGCGCTTCG
GCAGTGCGGGCCCCGTCTGCGGGCTCGGCATGGGAATCGGCGGGCGGAAC
AAGCCGGTGGTGGTGCTGGCACCCAGACCGAAGGAGGAGATGGACCGGGA
CATCGCCGTCGGATTGTCGGGCGAGTACGAGAAGTGCGGCCTGACAGTGC
TGACACGGAAGTGAGTGTCTGGAGACGGCGGAAGCGGGCAGGCAGAGGAA
GCGGAAAAAGGCGGGAGGGATGAATTTCCGGCGGAATTGGCAGTTGAGGA
GTGGGTTGTCCGGAGCTGATCGCGCCGTTCGTTGCGCGTGTGCAGCAGTG
CCTTGTGGGGTGTTTGCCACCCGTTGCGGCAAAGCGAATTTGGAAATTGA
GAGGTGTGAATGGGAGCAAAACCTCCTGCACGCCTGTCATGAACGGACGC
ATCTCCTTGGCTGCCCGGGGTGGCGCAGCGCAGCGGAGTGCCGTGACCCG
GCTGCCGTTATCTATTCCTGCTCGAACCTTTTCACCCCTCTTTTTTCACC
GCCATTTTTGCCGCCGCTGTCGGTGATGGCCGCTGCTTCCTTTCACCGCC
GCGCCATCGCTTTCCTTATCGTCGCTGCCGCCGCCGCCGCCGCCGCTTGT
CTTGCTGTGTGCGCTGCCGTCATTGTGCCGCCGCCTGTCGCCGGCACCGC
CCTTCCCGCCCTTCACCTCCCTGCTATGCGCTCGCGCGTGCAGCGGACGA
CCGTCTCGGGTGGAGGACCTGGACCTCGTGTCGGCGGGGAGCGCGCAGCG
CTGCATCGTGCTGCGACCCGAGCGCGACGCCATGGCCCCTGCCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1101:1163..2010-

>mRNA_P-wetherbeei_contig1101.2.1 ID=mRNA_P-wetherbeei_contig1101.2.1|Name=mRNA_P-wetherbeei_contig1101.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig1101:1163..2010- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCGATCCTCCGCCAGCTGGCGCTCGCGAAGCGAGAGGGGCGCTTCG
GCAGTGCGGGCCCCGTCTGCGGGCTCGGCATGGGAATCGGCGGGCGGAAC
AAGCCGGTGGTGGTGCTGGCACCCAGACCGAAGGAGGAGATGGACCGGGA
CATCGCCGTCGGATTGTCGGGCGAGTACGAGAAGTGCGGCCTGACAGTGC
TGACACGGAACGGACGACCGTCTCGGGTGGAGGACCTGGACCTCGTGTCG
GCGGGGAGCGCGCAGCGCTGCATCGTGCTGCGACCCGAGCGCGACGCCAT
GGCCCCTGCCGATGA
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