mRNA_P-wetherbeei_contig11009.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11009.1.1
Unique NamemRNA_P-wetherbeei_contig11009.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: D8LRQ7_ECTSI (DnaJ Cysteine-Rich Domain-Containing Protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 6.550e-19
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVRSTTTDLRLSVPXXXXXXXXXXXXXXXXXXGRAVPLMLDR 294
            +AN++++  AGG+VGV+GTL+ LELK+ ++K R  CPYC G+GKLVCA CF +G+  V+   +D   ++P                  GRAVP  LDR
Sbjct:  116 SANEWIAGVAGGSVGVLGTLIQLELKQEKLKTRRNCPYCDGSGKLVCAVCFSAGTFTVKLPGSDTYSTLPCPGCAGNKYITCLNCRGDGRAVPRELDR 213          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A835YW14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW14_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.550e-18
Identity = 61/97 (62.89%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    7 NDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVR--STTTDLRLSVPXXXXXXXXXXXXXXXXXXGRAVPLMLD 291
            N+ +S FAGGTVGVMGTL+ LELKK  V +RS CPYC GAG L CA+C+G G LL R  S      LSVP   XXXXXXXXXXXXXX G +VP +L+
Sbjct:   80 NELMSGFAGGTVGVMGTLIGLELKKQNVVKRSVCPYCQGAGTLTCARCYGVGILLARRRSDGAAAPLSVPCGCXXXXXXXXXXXXXXDGASVPPLLE 176          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.070e-17
Identity = 59/98 (60.20%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVRSTTTDLRLSVPXXXXXXXXXXXXXXXXXXGRAVPLMLDR 294
            TA D   AFAGGTVGVMG+LVA+E++K + ++R+ CPYC G G+L CA C+G+G + +        + V XXXXXXXXXXXXXXXXXX R VPLMLDR
Sbjct:   43 TAGDVACAFAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAGKVEIAGAQGSQTVVVDXXXXXXXXXXXXXXXXXXXRLVPLMLDR 140          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A2V3J075_9FLOR (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J075_9FLOR)

HSP 1 Score: 73.6 bits (179), Expect = 3.820e-14
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVRSTTT 189
            T  +  +A AGGTVGVMGT++ LEL++ RVK R  CPYC G GKL CA C+  G++  R+  T
Sbjct:   65 TVTEITAAIAGGTVGVMGTIITLELQRQRVKHRKQCPYCRGTGKLPCASCYTIGAVPSRTALT 127          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: M1UXZ1_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UXZ1_CYAM1)

HSP 1 Score: 73.6 bits (179), Expect = 4.450e-14
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   10 DYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSL 168
            +  SAFAGG++GV+GTL+ LEL + R +ER  CPYCSG GKLVC QC   G+L
Sbjct:   86 ELASAFAGGSIGVLGTLLTLELAQTRARERMQCPYCSGRGKLVCGQCLALGTL 138          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 6.480e-14
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLV 174
            T     +AFAGGTVGVMG+L+A EL++ R KE   CPYC G G+L C +C G G LL+
Sbjct:   22 TVAQIAAAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLI 79          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A7S2WEZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.070e-14
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 ANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLV 174
            A D ++ FAGG+VGV+G + A+E+KK   K++S CPYC+G G L CA+C+GSG ++V
Sbjct:   53 AADVLAGFAGGSVGVLGAIFAIEMKKRETKKKSECPYCNGNGHLTCAKCYGSGFMVV 109          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.490e-14
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 TANDYVSA-FAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVRSTTTDLRLSVPXXXXXXXXXXXXXXXXXXGRAVPLMLDR 294
            ++ ++VSA   GG+VGV+GTL+ +E KK+ V++ S C YC G+G LVC QC G+G L + +  T+  +S+                   GR+VP  L+R
Sbjct:   12 SSTEHVSAGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSISLGCPTCSGMTYITCINCKGDGRSVPNFLNR 110          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: R7QE93_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE93_CHOCR)

HSP 1 Score: 72.0 bits (175), Expect = 3.640e-13
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSL 168
            T N+  +A AGGTVGVMGT++ LE+++ +VKER  CPYC G GKL CA C+  G++
Sbjct:  119 TINEITAAIAGGTVGVMGTIITLEVRRQQVKERKQCPYCRGNGKLPCATCYTVGAV 174          
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Match: A0A7S2V2Y1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.260e-12
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   25 FAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQCFGSGSLLVRSTTTDLRLSVPXXXXXXXXXXXXXXXXXXGRAVPLMLD 291
            FAGG VG +GTL ALE K+ +V  R  CPYC+G G L CA C G+G +L  +  T   L V XXXXXXXXXXXXXXXXXX  AVPL+LD
Sbjct:   99 FAGGLVGCLGTLAALESKRSQVNSRKLCPYCTGKGTLTCAHCLGTGGILSINPDTGAELRVDXXXXXXXXXXXXXXXXXXXXAVPLILD 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ7_ECTSI6.550e-1942.86DnaJ Cysteine-Rich Domain-Containing Protein n=2 T... [more]
A0A835YW14_9STRA1.550e-1862.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U8V3_9STRA1.070e-1760.20Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2V3J075_9FLOR3.820e-1452.38Protein ORANGE-LIKE, chloroplastic n=1 Tax=Gracila... [more]
M1UXZ1_CYAM14.450e-1460.38Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A7S1TK16_9RHOD6.480e-1455.17Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S2WEZ4_9STRA8.070e-1452.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YP24_9STRA8.490e-1437.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7QE93_CHOCR3.640e-1355.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2V2Y1_9STRA1.260e-1261.80Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11009contigP-wetherbeei_contig11009:610..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S380_25V6.1
Model size294
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0019216,GO:0019222,GO:0019747,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045828,GO:0045834,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0065007,GO:0065008,GO:0080090,GO:1904143
Exons2
Evalue4e-09
EggNOG OGs28NS1@1|root,2QVC3@2759|Eukaryota,37KMB@33090|Viridiplantae,3G77B@35493|Streptophyta
DescriptionEncodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.0803692-CDS-P-wetherbeei_contig11009:609..8631683185894.0803692-CDS-P-wetherbeei_contig11009:609..863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11009 610..863 +
1683185894.089803-CDS-P-wetherbeei_contig11009:1110..11501683185894.089803-CDS-P-wetherbeei_contig11009:1110..1150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11009 1111..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11009.1.1prot_P-wetherbeei_contig11009.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11009 610..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11009.1.1

>prot_P-wetherbeei_contig11009.1.1 ID=prot_P-wetherbeei_contig11009.1.1|Name=mRNA_P-wetherbeei_contig11009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
TANDYVSAFAGGTVGVMGTLVALELKKFRVKERSTCPYCSGAGKLVCAQC
FGSGSLLVRSTTTDLRLSVPCPCCGGKKGVVCTNCRGDGRAVPLMLDR
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mRNA from alignment at P-wetherbeei_contig11009:610..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11009.1.1 ID=mRNA_P-wetherbeei_contig11009.1.1|Name=mRNA_P-wetherbeei_contig11009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=541bp|location=Sequence derived from alignment at P-wetherbeei_contig11009:610..1150+ (Phaeothamnion wetherbeei SAG_119_79)
ACCGCGAACGACTACGTCAGCGCGTTCGCCGGCGGCACCGTCGGCGTGAT GGGCACGCTGGTAGCGCTCGAGCTCAAGAAGTTTCGCGTCAAGGAGCGGT CGACCTGCCCCTACTGCTCCGGGGCGGGCAAGCTGGTTTGCGCACAGTGC TTCGGCAGCGGCTCGCTGCTGGTGAGGAGCACGACGACAGATCTGCGGCT CTCCGTGCCGTGCCCGTGCTGCGGGGGCAAGAAAGGCGTAGTCTGCACGA ATTGGTAAGTAGTTTTGTTTTTCTAATTATAGATTGAATTCTCTCAATCC TTTGGCGTTTCAAAATGCTTTTCAAAAGGTTGTTGGCACTGACAAACCAT TCCTTTCAAATGAGTTTTAATGAAAATAATTTTGTCGGTCAGCGGAAGGA TTTGTTTTGATGTCAAGAGATGAAGCACGACATGCAGGTTTCGTAAGCAA CAACCAGCAAACCTGGCAACCTTTGTCCTTCACTGTCAACCAAAAAAACA GCCGAGGCGACGGCCGCGCCGTTCCACTCATGCTCGACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11009:610..1150+

>mRNA_P-wetherbeei_contig11009.1.1 ID=mRNA_P-wetherbeei_contig11009.1.1|Name=mRNA_P-wetherbeei_contig11009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig11009:610..1150+ (Phaeothamnion wetherbeei SAG_119_79)
ACCGCGAACGACTACGTCAGCGCGTTCGCCGGCGGCACCGTCGGCGTGAT
GGGCACGCTGGTAGCGCTCGAGCTCAAGAAGTTTCGCGTCAAGGAGCGGT
CGACCTGCCCCTACTGCTCCGGGGCGGGCAAGCTGGTTTGCGCACAGTGC
TTCGGCAGCGGCTCGCTGCTGGTGAGGAGCACGACGACAGATCTGCGGCT
CTCCGTGCCGTGCCCGTGCTGCGGGGGCAAGAAAGGCGTAGTCTGCACGA
ATTGCCGAGGCGACGGCCGCGCCGTTCCACTCATGCTCGACCGC
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