mRNA_P-wetherbeei_contig10998.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10998.1.1
Unique NamemRNA_P-wetherbeei_contig10998.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Match: A0A0G2ZIF0_9DELT (Uncharacterized protein DUF3592 n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZIF0_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 1.090e-9
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 ISYSYQVDGVTYQGNQLRHWEMFSAPRDWHSRVVHDHPAGANTTVYYDPEHPENSVVIAGLQGIDLFLIM 210
            + Y ++V+G  Y+G+Q R+    S+ R     +    P GA   V+YDPE PE++V+I G+QG+DLFL++
Sbjct:   66 VRYVHEVEGRRYEGSQYRYGAWHSSNRSAAEDLARRFPVGATVPVFYDPEAPEDAVLITGVQGLDLFLLL 135
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BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Match: A0A1N6QNF7_PSEAC (Uncharacterized protein n=2 Tax=Pseudomonas alcaligenes TaxID=43263 RepID=A0A1N6QNF7_PSEAC)

HSP 1 Score: 51.6 bits (122), Expect = 1.880e-6
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    1 ISYSYQVDGVTYQGNQLRHWEMFSAPRDWHSRVVHDHPAGANTTVYYDPEHPENSVV 171
            + YSYQVDGV YQGN+LR      +      R +  +P G    VYY+P+ PE S++
Sbjct:   61 VEYSYQVDGVRYQGNRLRIQPAEYSSASSARRELMQYPVGGKVRVYYNPQQPERSLL 117
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BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Match: UPI001C4507A9 (DUF3592 domain-containing protein n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C4507A9)

HSP 1 Score: 52.0 bits (123), Expect = 2.540e-6
Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 ISYSYQVDGVTYQGNQLRHWEMFSAPRDWHSRVVHDHPAGANTTVYYDPEHPENSVVIAGLQG 189
            +SY Y+VDG  + GN++  + +         R   DHP  ++ TV+YDP +P+N+V++ G + 
Sbjct:   67 VSYRYEVDGKAFDGNRIAFYTLMYPET---VRFAEDHPQNSDVTVFYDPNNPQNAVLMTGARS 126
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BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Match: A0A382WJU6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382WJU6_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 2.090e-5
Identity = 21/64 (32.81%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 ISYSYQVDGVTYQGNQLRHWEMFSAPRDWHSRVVHDHPAGANTTVYYDPEHPENSVVIAGLQGI 192
            I YSY VDG +Y  + +  +++      +   +V  HP G+  T YY+PE+P+ +V++ G  G+
Sbjct:   80 IRYSYFVDGESYSNDDIVLFDLDEGDFGFSISLVDQHPKGSEVTAYYNPENPDQAVLMKGFSGV 143
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BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Match: A0A367Z1X9_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A367Z1X9_9CHLR)

HSP 1 Score: 49.7 bits (117), Expect = 2.390e-5
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    1 ISYSYQVDGVTYQGNQLRHW--EMFSAPRDWHSRVVHDHPAGANTTVYYDPEHPENSVVIAGLQGIDLFLIMAL 216
            + YSYQV GVTYQG+++     + +S+P+     +   +P GA   VYY+PE+P+ +V+   + G +  LI  +
Sbjct:   78 VEYSYQVGGVTYQGDKIAFGARKEYSSPKKPREEIAR-YPVGAQVRVYYNPENPKEAVLEHHVVGGNFMLIFGI 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0G2ZIF0_9DELT1.090e-940.00Uncharacterized protein DUF3592 n=1 Tax=Archangium... [more]
A0A1N6QNF7_PSEAC1.880e-642.11Uncharacterized protein n=2 Tax=Pseudomonas alcali... [more]
UPI001C4507A92.540e-633.33DUF3592 domain-containing protein n=1 Tax=Alteromo... [more]
A0A382WJU6_9ZZZZ2.090e-532.81Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A367Z1X9_9CHLR2.390e-535.14Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10998contigP-wetherbeei_contig10998:108..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1297742.A176_04257
PFAMsDUF3592
Model size246
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.52e-07
EggNOG OGs2EH3D@1|root,33AVD@2|Bacteria,1R9DA@1224|Proteobacteria
DescriptionProtein of unknown function (DUF3592)
Cds size246
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.5085828-CDS-P-wetherbeei_contig10998:107..3531683185893.5085828-CDS-P-wetherbeei_contig10998:107..353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10998 108..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10998.1.1prot_P-wetherbeei_contig10998.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10998 108..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10998.1.1

>prot_P-wetherbeei_contig10998.1.1 ID=prot_P-wetherbeei_contig10998.1.1|Name=mRNA_P-wetherbeei_contig10998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
ISYSYQVDGVTYQGNQLRHWEMFSAPRDWHSRVVHDHPAGANTTVYYDPE
HPENSVVIAGLQGIDLFLIMALSILGTFLLIL
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mRNA from alignment at P-wetherbeei_contig10998:108..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10998.1.1 ID=mRNA_P-wetherbeei_contig10998.1.1|Name=mRNA_P-wetherbeei_contig10998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig10998:108..353- (Phaeothamnion wetherbeei SAG_119_79)
ATATCCTACAGTTATCAAGTAGACGGCGTTACGTATCAAGGAAATCAACT
TCGACATTGGGAGATGTTCAGCGCGCCTCGTGACTGGCATTCGCGGGTCG
TACATGATCACCCGGCGGGTGCCAATACGACGGTATATTATGATCCCGAG
CACCCGGAGAATTCAGTCGTCATCGCGGGGCTACAGGGAATCGATTTATT
CTTGATCATGGCGCTGTCGATTTTAGGTACCTTCCTTCTCATTTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10998:108..353-

>mRNA_P-wetherbeei_contig10998.1.1 ID=mRNA_P-wetherbeei_contig10998.1.1|Name=mRNA_P-wetherbeei_contig10998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig10998:108..353- (Phaeothamnion wetherbeei SAG_119_79)
ATATCCTACAGTTATCAAGTAGACGGCGTTACGTATCAAGGAAATCAACT
TCGACATTGGGAGATGTTCAGCGCGCCTCGTGACTGGCATTCGCGGGTCG
TACATGATCACCCGGCGGGTGCCAATACGACGGTATATTATGATCCCGAG
CACCCGGAGAATTCAGTCGTCATCGCGGGGCTACAGGGAATCGATTTATT
CTTGATCATGGCGCTGTCGATTTTAGGTACCTTCCTTCTCATTTTG
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