mRNA_P-wetherbeei_contig10989.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10989.1.2
Unique NamemRNA_P-wetherbeei_contig10989.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A6A1UNY8_9ROSI (Uncharacterized protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UNY8_9ROSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.000e-11
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  273 ARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFSF 566
            A A+ LHP L+     F A+ G  GG+ +LL +D P+ +S HA T    +ALLA Q+ L  +   N   R  H  +G G + L L+HA LGL+LGFSF
Sbjct:  157 AIAKDLHPKLLGGMFFFFAL-GATGGVISLLTSDKPIFESPHAVTGIIGLALLAMQSTLPALFENNPELRNVHGILGGGIMSLFLIHAALGLRLGFSF 253          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A0K9QWZ2_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QWZ2_SPIOL)

HSP 1 Score: 70.5 bits (171), Expect = 8.150e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  273 ARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFSF 566
            A+A+ LHP L+    +F  + G  GG+ +LL +D P+ DS HA T    +ALL  Q  L  +   N   R  H  +G+G + L +VHA LGL+LGFS+
Sbjct:  170 AKAKDLHPKLLAGMFIFFGL-GATGGVTSLLTSDRPIFDSPHAVTGLIGLALLTIQTTLPTLFEGNPGLRNVHGILGSGIMTLFVVHAALGLQLGFSY 266          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A2V0P790_9CHLO (Translation initiation factor n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P790_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-10
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  273 ARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            A+A+ LHP L+  A +F A+ G  GG  +L++   P+ +S H  T+ + + LLA QA+L     ++  +RT HA  G G +GL+L+HAGLG++L  S
Sbjct:  114 AKAKDLHPKLLGGAFVFFAL-GATGGCMSLIMQGKPIFESAHVTTALWGLTLLAFQAMLPLFFDESPGSRTVHAFFGTGIMGLMLIHAGLGVQLALS 209          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A1S2Z6H2_CICAR (uncharacterized protein LOC101490805 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2Z6H2_CICAR)

HSP 1 Score: 68.9 bits (167), Expect = 2.300e-10
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  273 ARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            A+A+ LHP L+     F A+ G  GG+ +LL +D P+ +S HA T    +ALL  Q +L ++   N   R  H  +G+  + L LVHA LGL+LGFS
Sbjct:  150 AKAKDLHPKLLAGMFFFFAL-GATGGVTSLLTSDKPIFESPHAVTGVIGLALLTIQTILPSLFEGNPGLRNVHGILGSSIMTLFLVHAALGLQLGFS 245          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A7S4GID7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GID7_9EUGL)

HSP 1 Score: 65.1 bits (157), Expect = 7.570e-9
Identity = 48/100 (48.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  273 ARARKLHPPLM-VAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNVMG-QNS-TARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            A A   HP LM +   LFA   G QGG+   L    PL  S H+ T    + LL  Q +LG VM  QNS T RTAH  +G+  + LLL+HAGLGLKLG S
Sbjct:  181 ALAGASHPALMGLMTVLFA--LGGQGGLLFTLYEGRPLFSSEHSVTGVAGITLLLAQGVLGKVMKVQNSDTLRTAHTVIGSAIMILLLIHAGLGLKLGLS 278          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A834H810_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834H810_RHOSS)

HSP 1 Score: 63.2 bits (152), Expect = 4.050e-8
Identity = 43/118 (36.44%), Postives = 58/118 (49.15%), Query Frame = 3
Query:  273 ARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLG--------------------NVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFSF 566
            A A+ LHP L+     F A+ G  GG+ +LL +D P+ +S HA T    +ALL  Q +L                     N M  N   R  H  +G+G + L LVHA LGL+LGFS+
Sbjct:  181 ATAKDLHPKLLAGMFFFFAL-GATGGVTSLLTSDKPIFESPHAVTGSIGLALLTIQTILPTLFEELEYFLSRLIFGFELPNPMQGNPGLRNVHGILGSGIMTLFLVHAALGLQLGFSY 297          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: UPI00140BD85F (DUF4079 domain-containing protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI00140BD85F)

HSP 1 Score: 58.9 bits (141), Expect = 2.750e-7
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  306 VAAALFAAV-FGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNV-MGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            VA  +FA +  G  GGI +L++   PLL S H  T   ++ LLA+  LL  +  GQ  T RT HA +G+ A+G+ +VHA LG++LG S
Sbjct:   75 VAPLMFAFIAMGYTGGILSLVMQKQPLLSSPHFWTGTAIIGLLASNGLLAAMKFGQGGTLRTVHAYLGSVALGVFVVHAVLGVRLGLS 162          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: K9TII7_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TII7_9CYAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.590e-7
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  282 RKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLG-NVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            RKL P + +  AL     G  GG+ +L++   P+L+S H  T   L+ LLA    L     G   T R AHA +G  A+GL+L+HA LGLKLG S
Sbjct:   68 RKLAPWMFLFMAL-----GYTGGVLSLVMQRQPILESPHFWTGSILLVLLALNGTLSLGFQGDRLTLRAAHAYIGTVALGLMLLHALLGLKLGLS 157          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A8J7BQD2_9CYAN (DUF4079 domain-containing protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BQD2_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 6.590e-7
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  270 AARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLGNV-MGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            A ++R  HP +     LF A+ G  GG+ +L++   P+L+S H  T   +++LLA   ++     G N + R  HA +G+ A+ L+LVHAGLGLKLG S
Sbjct:   60 ADQSRNAHPKIAGWMFLFMAL-GFTGGVLSLVMQQQPVLESPHFWTGLVVLSLLAFNGVIALAGFGGNKSLRIVHALLGSIALLLMLVHAGLGLKLGLS 157          
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Match: A0A8K1ZVY9_9CYAN (DUF4079 family protein n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K1ZVY9_9CYAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.820e-6
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  330 VFGTQGGIGALLLADHPLLDSGHAATSGYLVALLATQALLG-NVMGQNSTARTAHAAVGAGAVGLLLVHAGLGLKLGFS 563
            V G  GGI +L++ + P+L+S H  +   ++ LL   A L     G   + RTAHA +G+ A+G+L++H  LGLKLGF+
Sbjct:   82 VLGYTGGILSLVMQEQPILESPHFWSGSTVIGLLGINAALSLTKFGGQGSLRTAHAYLGSVALGVLVIHTLLGLKLGFT 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10989.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6A1UNY8_9ROSI7.000e-1142.86Uncharacterized protein n=1 Tax=Morella rubra TaxI... [more]
A0A0K9QWZ2_SPIOL8.150e-1140.82Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A2V0P790_9CHLO1.000e-1040.21Translation initiation factor n=1 Tax=Raphidocelis... [more]
A0A1S2Z6H2_CICAR2.300e-1041.24uncharacterized protein LOC101490805 n=1 Tax=Cicer... [more]
A0A7S4GID7_9EUGL7.570e-948.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A834H810_RHOSS4.050e-836.44Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
UPI00140BD85F2.750e-743.18DUF4079 domain-containing protein n=1 Tax=Aphanoca... [more]
K9TII7_9CYAN3.590e-742.11Uncharacterized protein n=2 Tax=Oscillatoriaceae T... [more]
A0A8J7BQD2_9CYAN6.590e-739.39DUF4079 domain-containing protein n=3 Tax=unclassi... [more]
A0A8K1ZVY9_9CYAN1.820e-640.51DUF4079 family protein n=1 Tax=Petrachloros mirabi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10989contigP-wetherbeei_contig10989:806..2041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4558.Sb01g047790.1
PFAMsDUF4079
Model size718
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.2e-13
EggNOG OGs2CM9B@1|root,2QPP2@2759|Eukaryota,37HWB@33090|Viridiplantae,3GBYU@35493|Streptophyta,3KXK8@4447|Liliopsida,3IADG@38820|Poales
DescriptionProtein of unknown function (DUF4079)
Cds size480
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.0268323-UTR-P-wetherbeei_contig10989:805..9541683185893.0268323-UTR-P-wetherbeei_contig10989:805..954Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10989 806..954 -
1683185893.0498827-UTR-P-wetherbeei_contig10989:1656..16571683185893.0498827-UTR-P-wetherbeei_contig10989:1656..1657Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10989 1657..1657 -
1683185893.0599809-UTR-P-wetherbeei_contig10989:1953..20411683185893.0599809-UTR-P-wetherbeei_contig10989:1953..2041Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10989 1954..2041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.035057-CDS-P-wetherbeei_contig10989:954..11141683185893.035057-CDS-P-wetherbeei_contig10989:954..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10989 955..1114 -
1683185893.0423176-CDS-P-wetherbeei_contig10989:1336..16561683185893.0423176-CDS-P-wetherbeei_contig10989:1336..1656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10989 1337..1656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10989.1.2prot_P-wetherbeei_contig10989.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10989 955..1656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10989.1.2

>prot_P-wetherbeei_contig10989.1.2 ID=prot_P-wetherbeei_contig10989.1.2|Name=mRNA_P-wetherbeei_contig10989.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MICLVLPLAAYGVSLGLQIRVARLAASAVAASVADFEGMENVAAAAAAKA
AAATAVSSADAARARKLHPPLMVAAALFAAVFGTQGGIGALLLADHPLLD
SGHAATSGYLVALLATQALLGNVMGQNSTARTAHAAVGAGAVGLLLVHAG
LGLKLGFSF*
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mRNA from alignment at P-wetherbeei_contig10989:806..2041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10989.1.2 ID=mRNA_P-wetherbeei_contig10989.1.2|Name=mRNA_P-wetherbeei_contig10989.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig10989:806..2041- (Phaeothamnion wetherbeei SAG_119_79)
GACGGGTATGAAGGAATGCGGCCGCGCGGGAAGATCCTTTGCCTCGTGAC GGACATTAATATGGAAACTGATGCGGACCAAAAAACAGGTGAGCGGTGCT GAGGACGAAAGAATCACGTGGCATTGAGAATTCACAGCCTGCCAACATTG CATAATTCGCCCTCGCTCTTTTGCATCTTCTTCCCCCTGATCCCGTAGTT CGCGTTTCCGTAACCATTCCTTTTCGTTAGCAATAGCACTTCGGTAGCGG TTTGGTTCTGGCAAGAACTTGTACGAAAAAGAAAACTTGTAATTGCTGGC GTGCTCTGTGGCACTGCCCCTTCCCATTTATTTCGTTCCGATCCGGCCGA TCGCTGTAAACGGCCATTGCGTCACGCGAGACAGCATGATCTGCTTAGTT CTGCCTCTCGCGGCCTACGGAGTCTCCTTGGGACTACAGATCCGTGTTGC GCGTTTGGCCGCATCAGCAGTGGCAGCATCGGTCGCCGATTTTGAAGGTA TGGAGAATGTGGCCGCTGCAGCGGCAGCTAAAGCAGCAGCTGCGACGGCG GTCTCTTCTGCCGATGCCGCTCGCGCCCGAAAGCTGCACCCGCCGCTGAT GGTCGCGGCGGCGCTATTTGCGGCAGTGTTCGGCACGCAGGGAGGCATCG GCGCGCTGCTGCTCGCGGACCACCCACTCCTCGACAGCGGGCACGCGGCG ACCAGGTGCGACGGTGGTACCCGGTCGGAGCGATCTCAAAAAATGAAGAC AAAACCTGTTAATTAGCTCCGGTTGTTTCATTGGCGAGAAGCATTCGCAG TGAGGGAGACACAACTGCTTTTACTGGCGCCTTAAAGCCAGGGCAGATCC CCCGTTTTTCCTTCCTCACACGCTTTTCTGTTCCCCACTCCGCGCTGCTG CCGCCGCCGCCATTTCCCCTCTCGCAGCGGGTACCTCGTTGCGCTGCTGG CGACGCAGGCGCTGCTGGGAAACGTCATGGGGCAGAACAGCACTGCGCGG ACAGCCCACGCCGCCGTGGGTGCAGGGGCGGTGGGTTTGCTGCTCGTGCA TGCCGGGCTGGGGCTCAAACTCGGTTTTAGCTTTTGAATTTGGCTAGCGG AGTAGCAGCTTTCATTCTGGAGGTAGACCCAAGCAGTACATGTTAGCGCA AAGGCTATTAAATAACCAAGGCAGATGGGGTTGCGTTCCTACTGTTTTCT CTTCATGCAACAAAGACAATGCAAATTCGAAAGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10989:806..2041-

>mRNA_P-wetherbeei_contig10989.1.2 ID=mRNA_P-wetherbeei_contig10989.1.2|Name=mRNA_P-wetherbeei_contig10989.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig10989:806..2041- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTGCTTAGTTCTGCCTCTCGCGGCCTACGGAGTCTCCTTGGGACT
ACAGATCCGTGTTGCGCGTTTGGCCGCATCAGCAGTGGCAGCATCGGTCG
CCGATTTTGAAGGTATGGAGAATGTGGCCGCTGCAGCGGCAGCTAAAGCA
GCAGCTGCGACGGCGGTCTCTTCTGCCGATGCCGCTCGCGCCCGAAAGCT
GCACCCGCCGCTGATGGTCGCGGCGGCGCTATTTGCGGCAGTGTTCGGCA
CGCAGGGAGGCATCGGCGCGCTGCTGCTCGCGGACCACCCACTCCTCGAC
AGCGGGCACGCGGCGACCAGCGGGTACCTCGTTGCGCTGCTGGCGACGCA
GGCGCTGCTGGGAAACGTCATGGGGCAGAACAGCACTGCGCGGACAGCCC
ACGCCGCCGTGGGTGCAGGGGCGGTGGGTTTGCTGCTCGTGCATGCCGGG
CTGGGGCTCAAACTCGGTTTTAGCTTTTGA
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