mRNA_P-wetherbeei_contig10985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10985.1.1
Unique NamemRNA_P-wetherbeei_contig10985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10985.1.1 vs. uniprot
Match: A0A6P5RNT9_PRUAV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RNT9_PRUAV)

HSP 1 Score: 49.3 bits (116), Expect = 9.800e-5
Identity = 27/86 (31.40%), Postives = 40/86 (46.51%), Query Frame = 1 
Query:   16 LLRDDANNVIQWLQQIGDDGCRYARLLDGDHLTAVLWSTKEQREPAKLYGQVVIQDSTFGTNCFGLPFFVDVCVDDDGRLVLSLCA 273
             L +  NN   + +  GD           D LT   W+    R     YG VV+ D+TF TN +GLPF   + V++ G+ ++  CA
Sbjct:   44 FLAEQKNNRSFYFKIEGDSN---------DRLTRCFWADATSRRAYGFYGDVVVLDTTFNTNRYGLPFAPMLGVNNHGQTIVLACA 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P5RNT9_PRUAV9.800e-531.40Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus avium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10985contigP-wetherbeei_contig10985:1408..1695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3847.GLYMA02G44110.1
PFAMsCOMM_domain,FAR1,MULE,SWIM
Model size288
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
Exons1
Evalue3.04e-06
EggNOG OGs28K4U@1|root,2QSJE@2759|Eukaryota,37KK6@33090|Viridiplantae,3GCBZ@35493|Streptophyta,4JGVK@91835|fabids
DescriptionProtein FAR1-RELATED SEQUENCE
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.8493195-CDS-P-wetherbeei_contig10985:1407..16951683185892.8493195-CDS-P-wetherbeei_contig10985:1407..1695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10985 1408..1695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10985.1.1prot_P-wetherbeei_contig10985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10985 1408..1695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10985.1.1

>prot_P-wetherbeei_contig10985.1.1 ID=prot_P-wetherbeei_contig10985.1.1|Name=mRNA_P-wetherbeei_contig10985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
KAKKSLLRDDANNVIQWLQQIGDDGCRYARLLDGDHLTAVLWSTKEQREP
AKLYGQVVIQDSTFGTNCFGLPFFVDVCVDDDGRLVLSLCAVFEI*
back to top

mRNA from alignment at P-wetherbeei_contig10985:1408..1695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10985.1.1 ID=mRNA_P-wetherbeei_contig10985.1.1|Name=mRNA_P-wetherbeei_contig10985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig10985:1408..1695- (Phaeothamnion wetherbeei SAG_119_79)
AAGGCCAAGAAATCATTGCTCAGGGATGATGCCAACAACGTCATCCAGTG
GCTGCAGCAGATAGGCGACGATGGGTGCAGATATGCTCGCCTCCTTGATG
GCGACCATCTGACGGCCGTCCTGTGGTCGACGAAGGAGCAGCGAGAGCCT
GCCAAGCTGTACGGCCAAGTCGTCATCCAAGACAGCACTTTCGGCACCAA
CTGTTTCGGTCTTCCGTTTTTCGTCGATGTCTGCGTCGACGATGACGGCA
GGTTAGTGCTGTCCTTGTGCGCTGTGTTTGAAATTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10985:1408..1695-

>mRNA_P-wetherbeei_contig10985.1.1 ID=mRNA_P-wetherbeei_contig10985.1.1|Name=mRNA_P-wetherbeei_contig10985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig10985:1408..1695- (Phaeothamnion wetherbeei SAG_119_79)
AAGGCCAAGAAATCATTGCTCAGGGATGATGCCAACAACGTCATCCAGTG
GCTGCAGCAGATAGGCGACGATGGGTGCAGATATGCTCGCCTCCTTGATG
GCGACCATCTGACGGCCGTCCTGTGGTCGACGAAGGAGCAGCGAGAGCCT
GCCAAGCTGTACGGCCAAGTCGTCATCCAAGACAGCACTTTCGGCACCAA
CTGTTTCGGTCTTCCGTTTTTCGTCGATGTCTGCGTCGACGATGACGGCA
GGTTAGTGCTGTCCTTGTGCGCTGTGTTTGAAATTTAG
back to top