mRNA_P-wetherbeei_contig10983.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10983.3.1
Unique NamemRNA_P-wetherbeei_contig10983.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10983.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10983contigP-wetherbeei_contig10983:827..2236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size734
Hectar predicted targeting categoryother localisation
Exons3
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.6958354-CDS-P-wetherbeei_contig10983:827..13301683185892.6958354-CDS-P-wetherbeei_contig10983:827..1330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10983 828..1330 -
1683185892.7119842-CDS-P-wetherbeei_contig10983:1661..18051683185892.7119842-CDS-P-wetherbeei_contig10983:1661..1805Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10983 1662..1805 -
1683185892.7232833-CDS-P-wetherbeei_contig10983:2151..22361683185892.7232833-CDS-P-wetherbeei_contig10983:2151..2236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10983 2152..2236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10983.3.1prot_P-wetherbeei_contig10983.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10983 828..2236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10983.3.1

>prot_P-wetherbeei_contig10983.3.1 ID=prot_P-wetherbeei_contig10983.3.1|Name=mRNA_P-wetherbeei_contig10983.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
GAGSGAEGPAAVAGGAAAAAADGTATPRGTGGARAAGTGAAAGAGAGSGA
ARDAAADAHQSGGAAPRPGRRGSGRTAIGVRERSASRPRRGAGARPPGGR
RARHGHGRPPVGGRRCHRSRSRRRRWRRWSRRAAAANVWRDRPVGDAARA
WIIDDGCGGGGCGGGARPRYRKPGGSVADGSGGGGGVAAGDGQRGRIFSG
RVRGRLRRCCVGPQPGWRQPQRPRNRAVDGRIVGGGGGRKLSGR
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mRNA from alignment at P-wetherbeei_contig10983:827..2236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10983.3.1 ID=mRNA_P-wetherbeei_contig10983.3.1|Name=mRNA_P-wetherbeei_contig10983.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1410bp|location=Sequence derived from alignment at P-wetherbeei_contig10983:827..2236- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCAGGGTCCGGAGCGGAGGGACCGGCGGCTGTCGCCGGCGGCGCTGC
AGCAGCAGCTGCTGACGGAACTGCAACTCCACGAGGTGAGGAAAATCCTT
TGGTGCTTTGAGAGTCTACCATGCAGTCCTTGGTGTTTGGCAGGATCTCA
CGATGGCTCGCTGCTGCAGGCCCCTAGCGGTTCTTTCAAAGTGCCCTGTT
TGCTTGAGGGTAATATTATTATAAACATATATAACGGCTAGCCGGCCCCT
TCCTTCTTCATTCTCCGCGTCAGAATGTCGTTAATAATGCTTGCAAATCG
TCTTTCTTTCTGGATCGGAGACCGACCTCGACGTTCCGGCGGTCCTGTTT
GCCGGCTTCCGGCAACTGCCGCGATTGCATCGCTGCCACCGCCGCCGCCG
CGACCGCTGCCGCCGCCGCCGCTCTTGGCAGGAACTGGCGGAGCACGAGC
TGCAGGCACAGGCGCTGCGGCAGGCGCGGGAGCTGGCAGCGGCGCGGCTC
GAGACGCAGCGGCAGATGCACATCAATCAGGCGGAGCGGCGCCGCGCCCG
GGACGCCGAGGCTCTGGTCGCACAGGTGAAGGACAGGAGAGGGAAAGCGG
CAAAAACGATGGCGGCAGCGGTTGTGGCTTCAGCTGTGACGGCTGCCATG
GATGGAAAGGGTTTGCTGCTTGGCAGGCGGATGCAATTTTTTGCTGTCTT
GTCGCTCTATTGCGGCCACAGTATGAACTATTTGGTGCCATTTTCCAATA
CTGTTGCGGCTGCAAGTAGCGACTGACCTTGATTTTTCCCCATTACCACG
AGCCTATCCATGCATTCAACTTCATTCAACGATGCAACGGCGGCAATTTA
GCGGCCCGCCGTGCTTTTTTGCCGGGCTCTGTCCCAATGCTGCGCCTTAT
CAACAGCAATTGGCGTACGAGAGCGCTCTGCATCGCGGCCTCGGCGCGGC
GCGGGAGCACGGCCTCCAGGAGGGCGTCGGGCTCGGCATGGGCATGGCCG
CCCACCAGTGGGCGGCCGCCGGTGTCACCGCAGCCGTAGCCGCCGCCGCC
GCTGGCGACGGTGGAGCAGGCGTGCCGCTGCCGCCAATGTATGGCGGGAC
CGGCCCGTGGGGGATGCCGCCAGAGCATGGATTATCGATGACGGCTGCGG
AGGCGGTGGCTGCGGCGGCGGCGCCCGGCCACGGTATCGGAAGCCAGGCG
GCAGCGTCGCGGACGGCAGTGGTGGCGGCGGCGGTGTCGCGGCTGGAGAC
GGGCAACGAGGGCGGATATTCTCTGGGCGGGTTCGAGGAAGACTCCGCCG
CTGCTGCGTCGGGCCGCAGCCGGGGTGGCGGCAGCCCCAGCGACCGCGCA
ACCGGGCAGTTGACGGGCGCATCGTCGGAGGCGGTGGAGGAAGAAAACTT
TCCGGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10983:827..2236-

>mRNA_P-wetherbeei_contig10983.3.1 ID=mRNA_P-wetherbeei_contig10983.3.1|Name=mRNA_P-wetherbeei_contig10983.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig10983:827..2236- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCAGGGTCCGGAGCGGAGGGACCGGCGGCTGTCGCCGGCGGCGCTGC
AGCAGCAGCTGCTGACGGAACTGCAACTCCACGAGGAACTGGCGGAGCAC
GAGCTGCAGGCACAGGCGCTGCGGCAGGCGCGGGAGCTGGCAGCGGCGCG
GCTCGAGACGCAGCGGCAGATGCACATCAATCAGGCGGAGCGGCGCCGCG
CCCGGGACGCCGAGGCTCTGGTCGCACAGCAATTGGCGTACGAGAGCGCT
CTGCATCGCGGCCTCGGCGCGGCGCGGGAGCACGGCCTCCAGGAGGGCGT
CGGGCTCGGCATGGGCATGGCCGCCCACCAGTGGGCGGCCGCCGGTGTCA
CCGCAGCCGTAGCCGCCGCCGCCGCTGGCGACGGTGGAGCAGGCGTGCCG
CTGCCGCCAATGTATGGCGGGACCGGCCCGTGGGGGATGCCGCCAGAGCA
TGGATTATCGATGACGGCTGCGGAGGCGGTGGCTGCGGCGGCGGCGCCCG
GCCACGGTATCGGAAGCCAGGCGGCAGCGTCGCGGACGGCAGTGGTGGCG
GCGGCGGTGTCGCGGCTGGAGACGGGCAACGAGGGCGGATATTCTCTGGG
CGGGTTCGAGGAAGACTCCGCCGCTGCTGCGTCGGGCCGCAGCCGGGGTG
GCGGCAGCCCCAGCGACCGCGCAACCGGGCAGTTGACGGGCGCATCGTCG
GAGGCGGTGGAGGAAGAAAACTTTCCGGACGA
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