mRNA_P-wetherbeei_contig10983.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10983.1.1
Unique NamemRNA_P-wetherbeei_contig10983.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10983.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10983contigP-wetherbeei_contig10983:2..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog244447.XP_008328445.1
Preferred nameCEP350
PFAMsCAP_GLY,DUF4378
Model size397
Max annot lvl33208|Metazoa
KEGG koko:K16768
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464
Exons1
Evalue3.43e-06
EggNOG OGsCOG5244@1|root,KOG4568@2759|Eukaryota,38C49@33154|Opisthokonta,3B97D@33208|Metazoa,3CT1N@33213|Bilateria,4811Q@7711|Chordata,49858@7742|Vertebrata,4A2PG@7898|Actinopterygii
DescriptionCentrosomal protein 350kDa
Cds size378
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.760488-CDS-P-wetherbeei_contig10983:1..3791683185892.760488-CDS-P-wetherbeei_contig10983:1..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10983 2..379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185892.7731793-UTR-P-wetherbeei_contig10983:379..3981683185892.7731793-UTR-P-wetherbeei_contig10983:379..398Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10983 380..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10983.1.1prot_P-wetherbeei_contig10983.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10983 2..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10983.1.1

>prot_P-wetherbeei_contig10983.1.1 ID=prot_P-wetherbeei_contig10983.1.1|Name=mRNA_P-wetherbeei_contig10983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MRSLSSGAGSDCWSPAGARTDLDDGGGGGGLGGGRPSATAAEAVAAAGEL
PPTGVGSFDHFTSQLVRQYRRDLEARRRHQEALLELRLTAVRERRARQLA
WLEQQRRALDRERRRQRLGGASAGSG
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mRNA from alignment at P-wetherbeei_contig10983:2..398-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10983.1.1 ID=mRNA_P-wetherbeei_contig10983.1.1|Name=mRNA_P-wetherbeei_contig10983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=397bp|location=Sequence derived from alignment at P-wetherbeei_contig10983:2..398- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAACTGGCGCCGTGGCATGCGCTCCCTCTCCAGCGGCGCCGGCTCAG
ACTGCTGGAGTCCGGCCGGAGCCCGCACGGACCTTGATGACGGCGGCGGC
GGCGGCGGCCTCGGCGGCGGCCGTCCCTCCGCAACGGCAGCAGAAGCGGT
AGCGGCGGCTGGCGAGCTGCCGCCGACGGGGGTGGGCAGTTTCGACCACT
TTACGTCGCAGCTGGTGCGCCAGTACCGCCGGGACCTCGAAGCGCGTCGC
CGCCACCAGGAGGCGCTCCTGGAGCTGCGACTGACGGCCGTGCGGGAGCG
GCGCGCCCGCCAGCTGGCCTGGCTGGAGCAGCAGCGGCGGGCGCTCGACC
GCGAGCGGCGGCGGCAGCGGCTTGGGGGGGCCAGCGCCGGCAGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10983:2..398-

>mRNA_P-wetherbeei_contig10983.1.1 ID=mRNA_P-wetherbeei_contig10983.1.1|Name=mRNA_P-wetherbeei_contig10983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig10983:2..398- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCCCTCTCCAGCGGCGCCGGCTCAGACTGCTGGAGTCCGGCCGG
AGCCCGCACGGACCTTGATGACGGCGGCGGCGGCGGCGGCCTCGGCGGCG
GCCGTCCCTCCGCAACGGCAGCAGAAGCGGTAGCGGCGGCTGGCGAGCTG
CCGCCGACGGGGGTGGGCAGTTTCGACCACTTTACGTCGCAGCTGGTGCG
CCAGTACCGCCGGGACCTCGAAGCGCGTCGCCGCCACCAGGAGGCGCTCC
TGGAGCTGCGACTGACGGCCGTGCGGGAGCGGCGCGCCCGCCAGCTGGCC
TGGCTGGAGCAGCAGCGGCGGGCGCTCGACCGCGAGCGGCGGCGGCAGCG
GCTTGGGGGGGCCAGCGCCGGCAGCGGC
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