mRNA_P-wetherbeei_contig10967.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10967.1.1
Unique NamemRNA_P-wetherbeei_contig10967.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10967.1.1 vs. uniprot
Match: A0A7S3Y143_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y143_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 2.390e-12
Identity = 51/138 (36.96%), Postives = 67/138 (48.55%), Query Frame = 1 
Query:   22 PPLLYDVVAAADEFLMPALKSQCVGAAIRTADAANAFEMLSVARLYGLGRLESHVMIVFAQVSQMGTRLCPQNLPTICFLPSTLHSPAYITPVYSQHLDELIESPEFEALVQESADSINFRETADSIPFVDDIAFHVS 435
            P LL++V+ +ADE L+P LK+   GA        N FE+L +A LY L RLES  M VFA                                     L+EL  + EF  LV ESA S+  RE+ADSIP +D+I FH++
Sbjct:   88 PELLFEVLPSADELLLPGLKALASGALAPAVGPENVFEVLRLAGLYSLPRLESRCMQVFAI-----------------------------------WLEELYSNEEFSTLVYESAMSLKTRESADSIPLLDEIRFHIT 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10967.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y143_HETAK2.390e-1236.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10967contigP-wetherbeei_contig10967:310..924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7918.ENSLOCP00000016734
Preferred nameABTB1
PFAMsAnk_2,Ank_5,BTB
Model size435
Max annot lvl33208|Metazoa
KEGG koko:K10520
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.2e-10
EggNOG OGsCOG0666@1|root,2QUFU@2759|Eukaryota,39MRQ@33154|Opisthokonta,3BDK5@33208|Metazoa,3CXM4@33213|Bilateria,48AYF@7711|Chordata,48Z75@7742|Vertebrata,4A0BS@7898|Actinopterygii
DescriptionAnkyrin repeat and BTB POZ
Cds size435
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.9895701-CDS-P-wetherbeei_contig10967:309..5331683185891.9895701-CDS-P-wetherbeei_contig10967:309..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10967 310..533 +
1683185892.000416-CDS-P-wetherbeei_contig10967:713..9241683185892.000416-CDS-P-wetherbeei_contig10967:713..924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10967 714..924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10967.1.1prot_P-wetherbeei_contig10967.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10967 310..924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10967.1.1

>prot_P-wetherbeei_contig10967.1.1 ID=prot_P-wetherbeei_contig10967.1.1|Name=mRNA_P-wetherbeei_contig10967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
ADGSELDPPLLYDVVAAADEFLMPALKSQCVGAAIRTADAANAFEMLSVA
RLYGLGRLESHVMIVFAQVSQMGTRLCPQNLPTICFLPSTLHSPAYITPV
YSQHLDELIESPEFEALVQESADSINFRETADSIPFVDDIAFHVS
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mRNA from alignment at P-wetherbeei_contig10967:310..924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10967.1.1 ID=mRNA_P-wetherbeei_contig10967.1.1|Name=mRNA_P-wetherbeei_contig10967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig10967:310..924+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGACGGGTCTGAACTGGACCCGCCGCTACTGTACGACGTGGTGGCGGC
GGCGGACGAGTTTTTGATGCCGGCGTTGAAGTCGCAGTGCGTTGGTGCTG
CCATCCGCACCGCCGACGCCGCCAACGCCTTTGAAATGCTGTCGGTGGCG
CGCCTCTACGGTCTCGGCCGGTTAGAGAGCCACGTCATGATAGTCTTTGC
CCAGGTAAGTCAGATGGGAACCCGGTGGCCTCGCGGTGTGCACGCGACTG
CACTTATTGCCGCCTCGCGGGCAATTTGAAAGGCTTCCCGGATCTGGTAT
TCAATCAAGCGCCCAGAGAGCATCTTTGGAAGTAAGATGTATTCTTCGGG
ATGAGCGACACCCAGGAAAGCATGTTAAGACCCTTTGCAGCCTGTGCCCG
CAAGCCTGTGCCCGCAAAACCTGCCAACGATCTGCTTCCTTCCCTCCACG
CTCCATTCTCCTGCTTACATAACTCCCGTATACTCGCAGCACCTGGACGA
GCTCATCGAGTCGCCGGAATTCGAGGCGCTGGTGCAGGAGAGCGCCGACA
GTATCAACTTCCGGGAGACGGCCGACTCGATCCCGTTCGTGGACGACATC
GCCTTCCACGTCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10967:310..924+

>mRNA_P-wetherbeei_contig10967.1.1 ID=mRNA_P-wetherbeei_contig10967.1.1|Name=mRNA_P-wetherbeei_contig10967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig10967:310..924+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGACGGGTCTGAACTGGACCCGCCGCTACTGTACGACGTGGTGGCGGC
GGCGGACGAGTTTTTGATGCCGGCGTTGAAGTCGCAGTGCGTTGGTGCTG
CCATCCGCACCGCCGACGCCGCCAACGCCTTTGAAATGCTGTCGGTGGCG
CGCCTCTACGGTCTCGGCCGGTTAGAGAGCCACGTCATGATAGTCTTTGC
CCAGGTAAGTCAGATGGGAACCCGCCTGTGCCCGCAAAACCTGCCAACGA
TCTGCTTCCTTCCCTCCACGCTCCATTCTCCTGCTTACATAACTCCCGTA
TACTCGCAGCACCTGGACGAGCTCATCGAGTCGCCGGAATTCGAGGCGCT
GGTGCAGGAGAGCGCCGACAGTATCAACTTCCGGGAGACGGCCGACTCGA
TCCCGTTCGTGGACGACATCGCCTTCCACGTCTCC
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