mRNA_P-wetherbeei_contig10964.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10964.2.1
Unique NamemRNA_P-wetherbeei_contig10964.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 176 bits (447), Expect = 3.940e-47
Identity = 97/168 (57.74%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHI-WCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            IF+G L+Y ++    RH+           +    QVRATGPVNPLTRQPVKGRK+ GG+RFGEMERDALLSHGAAFLLHDRLMNCSDRH A VC++CG +L+T + R     AGQS   A  + R  + +C  C+SS   H ++LPYVFRYL NELAGMNIK++L L 
Sbjct:  346 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSDRHPALVCSKCGSVLSTVTTRKSILTAGQSESLAQMSDRGTVGYCRFCESSDHCHVISLPYVFRYLANELAGMNIKINLKLD 498          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A425D3L1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3L1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 5.490e-47
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L 
Sbjct:  224 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 356          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.060e-45
Identity = 93/168 (55.36%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAA-RRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            IF+G L+Y ++    RH+           +    QVRATGPVNPLTRQP+KGRK+ GG+RFGEMERD+LLSHGA+FLLHDRLMNCSDRH   +CA CG LL+  + R P E  GQ G +      +R ++C  CKS      VALPYVFRYL NELAGM IK+ L L 
Sbjct:  231 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSDRHTGWICADCGSLLSPTTLRNPVEYIGQDGGSELLEHHKRTVFCRVCKSHNSCKPVALPYVFRYLANELAGMGIKMDLKLK 383          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: K3WI27_GLOUD (DNA-directed RNA polymerase subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI27_GLOUD)

HSP 1 Score: 176 bits (446), Expect = 4.280e-45
Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRL+NCSD+H+A VC  CG LL+ A++RA  E AGQ   A A  A+   +C+ C+S A+  AVA+PYVFRYL NELA MNIK+SL+L 
Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLLNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEIAVAMKAKTQWYCTVCQSGANCQAVAMPYVFRYLANELAAMNIKMSLSLK 1180          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A397FDW6_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDW6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.030e-45
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L 
Sbjct:  488 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 620          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A5D6YCW8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.880e-45
Identity = 87/133 (65.41%), Postives = 102/133 (76.69%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRLMNCSD+H+A VC  CG LL+ A++RA  E AGQ   A A  A+   +C  C+  A   AVA+PYVFRYL NELA MNIK+SL+L 
Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEVAVAIKAKSQWYCQVCRDGAHCQAVAMPYVFRYLANELAAMNIKMSLSLK 1180          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6H5KR08_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR08_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 8.980e-45
Identity = 99/183 (54.10%), Postives = 114/183 (62.30%), Query Frame = 2
Query:  143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAAR--------------RHIWCSAC--KSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            IF+G L+Y ++    RH+           +    QVRATGPVN LTRQP+KGRK KGGVR GEMERDALLSHGAAFLLHDRLMNCSDRH+AHVC+ CG LL+T++RR     AGQS                       R I C A   K    V AVA+PYVFRYL NELAGM IK++L  S
Sbjct:  100 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHIAHVCSTCGSLLSTSARRGAVATAGQSXXXXXXXXXXXXXXXXXXXXXXIRCITCPASGGKGGGKVVAVAMPYVFRYLANELAGMGIKLTLKTS 267          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A3R7ERU9_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ERU9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.250e-44
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L 
Sbjct:  661 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 793          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.640e-44
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L 
Sbjct: 1036 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 1168          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.220e-43
Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIW-CSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643
            QVRATGP N LTRQPVKGRKK+GG+RFGEMERDALL+HG +FLLHDRLMNCSD+H+A VC +CG LL+T ++RA    AGQS  A A    R  W C+ C++     AVA+PYVFRYL NELA MNIK++L L 
Sbjct: 1032 QVRATGPTNSLTRQPVKGRKKRGGIRFGEMERDALLAHGTSFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVSDAGQSDLAIALHKDRKQWMCATCRTGEACEAVAMPYVFRYLANELAAMNIKMTLALK 1165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTQ0_HETAK3.940e-4757.74DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A425D3L1_9STRA5.490e-4763.16DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]
A0A7S2V1Y1_9STRA1.060e-4555.36DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
K3WI27_GLOUD4.280e-4565.41DNA-directed RNA polymerase subunit beta n=1 Tax=G... [more]
A0A397FDW6_9STRA7.030e-4563.16DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A5D6YCW8_9STRA7.880e-4565.41DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A6H5KR08_9PHAE8.980e-4554.10DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A3R7ERU9_9STRA3.250e-4463.16DNA-directed RNA polymerase subunit beta (Fragment... [more]
W4FT36_9STRA6.640e-4463.16DNA-directed RNA polymerase subunit beta n=9 Tax=A... [more]
A0A6G0W8Q0_9STRA1.220e-4364.93DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10964contigP-wetherbeei_contig10964:556..1667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T004619
PFAMsRNA_pol_Rpa2_4,RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size1112
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.86e-48
EggNOG OGsCOG0085@1|root,KOG0216@2759|Eukaryota,1ME3G@121069|Pythiales
DescriptionDNA-directed RNA polymerase
Cds size618
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.9406238-UTR-P-wetherbeei_contig10964:555..5831683185891.9406238-UTR-P-wetherbeei_contig10964:555..583Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10964 556..583 +
1683185891.9606552-UTR-P-wetherbeei_contig10964:1201..16671683185891.9606552-UTR-P-wetherbeei_contig10964:1201..1667Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10964 1202..1667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.9508183-CDS-P-wetherbeei_contig10964:583..12011683185891.9508183-CDS-P-wetherbeei_contig10964:583..1201Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10964 584..1201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10964.2.1prot_P-wetherbeei_contig10964.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10964 584..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10964.2.1

>prot_P-wetherbeei_contig10964.2.1 ID=prot_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MASLRMHCCNFSAPGCICRHGSIQSMERPANWRLHICLIFVGALIYVEKN
LFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFG
EMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEA
AGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKV
SLTLS*
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mRNA from alignment at P-wetherbeei_contig10964:556..1667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10964.2.1 ID=mRNA_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-wetherbeei_contig10964:556..1667+ (Phaeothamnion wetherbeei SAG_119_79)
GGTTTGTTGGTTGCAGGGTTAGCTGTTTATGGCAAGTCTCAGGATGCACT GCTGCAACTTCTCCGCTCCGGGGTGTATTTGTCGTCATGGCTCCATTCAG AGTATGGAGCGACCTGCGAACTGGCGTTTGCATATTTGTTTAATTTTTGT GGGGGCGCTCATATATGTGGAGAAAAACCTCTTTAGTCGCCATTTGGCGC AATTTCTTCCGCCGCATCTCCCCCCATCGATCGGCCTTCTTGGACAGGTC CGCGCGACGGGACCGGTGAACCCGCTGACCCGTCAGCCGGTCAAGGGCCG CAAAAAGAAGGGCGGCGTCCGCTTCGGCGAGATGGAGCGGGATGCGCTGC TATCGCACGGCGCCGCCTTCCTGCTGCACGACCGTTTGATGAATTGCTCC GACCGCCACGTGGCCCACGTCTGCGCGCGCTGCGGCGGGCTGCTGACGAC GGCGTCGCGGCGCGCGCCGCAAGAGGCGGCGGGACAGAGCGGCCCGGCAG CGGCGGCAGCGGCGCGGCGGCACATTTGGTGCTCGGCATGCAAAAGCTCC GCAGACGTGCACGCCGTGGCGCTGCCGTACGTGTTCCGCTACCTTGTCAA CGAGCTGGCGGGCATGAACATCAAGGTGTCCCTCACGCTCAGCTGAAAAA CTTTTTTCCTCTTCTTCGTTGTGGCCGTTTTCTTCGCAGTTAGATTGTGG TTGATCCGTTGAACCGGCGGAGGGAGAATGCGGGCCCGGGAGCGCGGCCG CGGCGGCGGTCTCGCTCGGGAATTCGTGGCGGCGGCAGCCGGGGCACCAG CTGGAACGACCGGCTGGCGGCTATATGCGTGGCAGGTCCGACTTGGTCGG CGGGAAGGCGAGCTGCGGGCCGGCGGCGGTAGCGGCAGATCGGTGGGGCG GGTCATCTGGAGGCAAGCCGTGTGAGAGAAACACGCACCCAATGCTCCCG CCTGCTCCCGCCGGAGCAGGCGGGAGCATTGGGTGCGTCGCAGATGTGGC GCACCGGGCGGGGTTGGTCCTTGGACCGCCATCGGAATCCTTCAAAGGCG ATGATTGCGGAGAAGGGTGGGTTAGATAAGTGAGAGATGAGATTGGTGAA TGGTAAAGAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10964:556..1667+

>mRNA_P-wetherbeei_contig10964.2.1 ID=mRNA_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig10964:556..1667+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAGTCTCAGGATGCACTGCTGCAACTTCTCCGCTCCGGGGTGTAT
TTGTCGTCATGGCTCCATTCAGAGTATGGAGCGACCTGCGAACTGGCGTT
TGCATATTTGTTTAATTTTTGTGGGGGCGCTCATATATGTGGAGAAAAAC
CTCTTTAGTCGCCATTTGGCGCAATTTCTTCCGCCGCATCTCCCCCCATC
GATCGGCCTTCTTGGACAGGTCCGCGCGACGGGACCGGTGAACCCGCTGA
CCCGTCAGCCGGTCAAGGGCCGCAAAAAGAAGGGCGGCGTCCGCTTCGGC
GAGATGGAGCGGGATGCGCTGCTATCGCACGGCGCCGCCTTCCTGCTGCA
CGACCGTTTGATGAATTGCTCCGACCGCCACGTGGCCCACGTCTGCGCGC
GCTGCGGCGGGCTGCTGACGACGGCGTCGCGGCGCGCGCCGCAAGAGGCG
GCGGGACAGAGCGGCCCGGCAGCGGCGGCAGCGGCGCGGCGGCACATTTG
GTGCTCGGCATGCAAAAGCTCCGCAGACGTGCACGCCGTGGCGCTGCCGT
ACGTGTTCCGCTACCTTGTCAACGAGCTGGCGGGCATGAACATCAAGGTG
TCCCTCACGCTCAGCTGA
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