mRNA_P-wetherbeei_contig10964.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK) HSP 1 Score: 176 bits (447), Expect = 3.940e-47 Identity = 97/168 (57.74%), Postives = 118/168 (70.24%), Query Frame = 2 Query: 143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHI-WCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 IF+G L+Y ++ RH+ + QVRATGPVNPLTRQPVKGRK+ GG+RFGEMERDALLSHGAAFLLHDRLMNCSDRH A VC++CG +L+T + R AGQS A + R + +C C+SS H ++LPYVFRYL NELAGMNIK++L L Sbjct: 346 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSDRHPALVCSKCGSVLSTVTTRKSILTAGQSESLAQMSDRGTVGYCRFCESSDHCHVISLPYVFRYLANELAGMNIKINLKLD 498
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A425D3L1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3L1_9STRA) HSP 1 Score: 172 bits (437), Expect = 5.490e-47 Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA AGQS + + R+ C+ C++ AVA+PYVFRYL NELA MNIK++L+L Sbjct: 224 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 356
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.060e-45 Identity = 93/168 (55.36%), Postives = 112/168 (66.67%), Query Frame = 2 Query: 143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAA-RRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 IF+G L+Y ++ RH+ + QVRATGPVNPLTRQP+KGRK+ GG+RFGEMERD+LLSHGA+FLLHDRLMNCSDRH +CA CG LL+ + R P E GQ G + +R ++C CKS VALPYVFRYL NELAGM IK+ L L Sbjct: 231 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSDRHTGWICADCGSLLSPTTLRNPVEYIGQDGGSELLEHHKRTVFCRVCKSHNSCKPVALPYVFRYLANELAGMGIKMDLKLK 383
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: K3WI27_GLOUD (DNA-directed RNA polymerase subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI27_GLOUD) HSP 1 Score: 176 bits (446), Expect = 4.280e-45 Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRL+NCSD+H+A VC CG LL+ A++RA E AGQ A A A+ +C+ C+S A+ AVA+PYVFRYL NELA MNIK+SL+L Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLLNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEIAVAMKAKTQWYCTVCQSGANCQAVAMPYVFRYLANELAAMNIKMSLSLK 1180
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A397FDW6_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDW6_9STRA) HSP 1 Score: 172 bits (437), Expect = 7.030e-45 Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA AGQS + + R+ C+ C++ AVA+PYVFRYL NELA MNIK++L+L Sbjct: 488 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 620
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A5D6YCW8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW8_9STRA) HSP 1 Score: 175 bits (444), Expect = 7.880e-45 Identity = 87/133 (65.41%), Postives = 102/133 (76.69%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRLMNCSD+H+A VC CG LL+ A++RA E AGQ A A A+ +C C+ A AVA+PYVFRYL NELA MNIK+SL+L Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEVAVAIKAKSQWYCQVCRDGAHCQAVAMPYVFRYLANELAAMNIKMSLSLK 1180
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6H5KR08_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR08_9PHAE) HSP 1 Score: 164 bits (415), Expect = 8.980e-45 Identity = 99/183 (54.10%), Postives = 114/183 (62.30%), Query Frame = 2 Query: 143 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAAR--------------RHIWCSAC--KSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 IF+G L+Y ++ RH+ + QVRATGPVN LTRQP+KGRK KGGVR GEMERDALLSHGAAFLLHDRLMNCSDRH+AHVC+ CG LL+T++RR AGQS R I C A K V AVA+PYVFRYL NELAGM IK++L S Sbjct: 100 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHIAHVCSTCGSLLSTSARRGAVATAGQSXXXXXXXXXXXXXXXXXXXXXXIRCITCPASGGKGGGKVVAVAMPYVFRYLANELAGMGIKLTLKTS 267
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A3R7ERU9_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ERU9_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.250e-44 Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA AGQS + + R+ C+ C++ AVA+PYVFRYL NELA MNIK++L+L Sbjct: 661 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 793
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA) HSP 1 Score: 172 bits (437), Expect = 6.640e-44 Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA AGQS + + R+ C+ C++ AVA+PYVFRYL NELA MNIK++L+L Sbjct: 1036 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSLK 1168
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.220e-43 Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 2 Query: 245 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIW-CSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 643 QVRATGP N LTRQPVKGRKK+GG+RFGEMERDALL+HG +FLLHDRLMNCSD+H+A VC +CG LL+T ++RA AGQS A A R W C+ C++ AVA+PYVFRYL NELA MNIK++L L Sbjct: 1032 QVRATGPTNSLTRQPVKGRKKRGGIRFGEMERDALLAHGTSFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVSDAGQSDLAIALHKDRKQWMCATCRTGEACEAVAMPYVFRYLANELAAMNIKMTLALK 1165 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10964.2.1 >prot_P-wetherbeei_contig10964.2.1 ID=prot_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp MASLRMHCCNFSAPGCICRHGSIQSMERPANWRLHICLIFVGALIYVEKNback to top mRNA from alignment at P-wetherbeei_contig10964:556..1667+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10964.2.1 ID=mRNA_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-wetherbeei_contig10964:556..1667+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10964:556..1667+ >mRNA_P-wetherbeei_contig10964.2.1 ID=mRNA_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig10964:556..1667+ (Phaeothamnion wetherbeei SAG_119_79)back to top |