mRNA_P-wetherbeei_contig10957.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10957.1.1
Unique NamemRNA_P-wetherbeei_contig10957.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A7S4D7H5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7H5_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 7.120e-19
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  418 WQQF---LLAGSMDTMFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPD 822
            W+ F   +LAG+ DT FY +       W+ P  W A + L   +     R G T  +  AARR QA WRA+ AR   +  ++AK+L  + E+ YL  P     +  Y ++LH +R DYDRVRPLY +A+  M RRGPD
Sbjct:   55 WEMFEELVLAGTCDTTFYFNRVTEQGSWDKPRAWAAADDLAWLEGQELARQGFTTREARAARRFQALWRAKQARRAFQLILKAKRLMETCEDRYLEDPDSIVHLCNYAIYLHAMRHDYDRVRPLYIKAMEFMRRRGPD 192          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A6G0X0V4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0V4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-12
Identity = 65/195 (33.33%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  253 RLARL-VQRCWRGC--RYGRRLRXXXXXXXXXXXAEWSEREWAAAVAAAGAPRAKKAGWQQFLLAGSMDT-MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            RLA L +QRCWRG   R+  + R            EW++    A + +  +       WQ+  LA +    +FY +P  G   W+ P  W+  +R +  +R +    G T     AA  +Q+ +R R AR    R +Q   +    E+EYL  P +  R+  Y L+LH VR DYDR RPLY R +  M  RGPD+
Sbjct:  585 RLAALDIQRCWRGMHGRFRAKKRQAMKTGPQNYY-EWADARKHATIVSTFSV------WQEMKLANTSGYGIFYCNPITGQCVWDKPAAWIEYDRAKFLERQQMHYYGYTTQMYNAAVYLQSLYRMRKARVYFHRLMQGVTICRHCEQEYLRDPLNLTRLGNYTLYLHAVRHDYDRARPLYQRLMEFMAHRGPDI 772          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A024UNG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNG6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.920e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  418 WQQFLLAGSMDT-MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            WQ+  LA S    +FY +   G   W+ P  W+  +R +  +R +    G T     AA  +Q+ +R R AR    R +Q   +  S E +YL+ P +  R+  Y+L+LH +R DYDR RPLY+R +  M  RGPD+
Sbjct: 1608 WQEMQLANSSTHGIFYCNHITGQCVWDKPIAWVENDRAKFLERQQMHYFGYTTQMLHAAITLQSMFRMRTARVYFHRLMQGVSICRSCEADYLNDPLNLTRLGNYVLYLHAIRHDYDRARPLYSRLMEYMTARGPDV 1744          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: W4H2J7_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2J7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-12
Identity = 65/204 (31.86%), Postives = 95/204 (46.57%), Query Frame = 1
Query:  241 RAQLRLARL----VQRCWRGCRYGR--RLRXXXXXXXXXXXAEWSEREWAAAVAAAGAPRAKKAGWQQFLLAGSMDT---MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            R Q RL R     VQRCWRG  +GR    +            EW++    A + +          WQ+ LLA +  +   +FY +   G   W+ P  W+  +R +  +R +    G T     AA  +Q+ +R R AR    R +Q   +    E +YL+ P +  R+  Y L+LH +R DYDR RPLY R +  M  RGPD+
Sbjct: 1640 RVQYRLERRASVNVQRCWRGM-HGRFRAKKFQAMKRGPQTYFEWADARKLATILSTFQV------WQEMLLANTNKSSYGIFYANHITGQCVWDKPVAWVEHDRQQFLERQQMYYYGYTTQMLEAAVTLQSLFRMRTARVHFHRLMQGVAICRRCESDYLNDPLNLTRLGNYALYLHAIRHDYDRARPLYRRLMEYMAARGPDV 1836          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A485LEK7_9STRA (Aste57867_19465 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEK7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.300e-11
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  418 WQQFLLAGSMDT-MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            WQ+  +A +    +FY +   G   W+ P  W+  +R++  +R +    G T     AA  +Q+ +R R AR    R ++   +  + E EYL+ PR+  ++  Y LFLH VR DYDR RPLY R +  M  RGPD+
Sbjct: 1698 WQEMQMANTTGYGIFYCNHITGQCVWDKPVAWVEYDRVKFLERQQMHYFGYTTKMLNAAVLLQSLYRMRTARVYFHRLMRGVSICRTCETEYLNDPRNITKLGNYTLFLHAVRHDYDRARPLYQRLMDYMTSRGPDV 1834          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A3L6UTN4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UTN4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.690e-11
Identity = 63/200 (31.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:  241 RAQLRLARLVQRCWRGCRYGR--RLRXXXXXXXXXXXAEWSEREWAAAVAAAGAPRAKKAGWQQFLLAGSMDT---MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            R + R A  VQRCWRG  +GR    +            EW++    A + +          WQ+ LLA +  +   +FY +   G   W+ P  W+  +R +Q         G T     AA  +Q+ +R R AR    R +Q   +    E +YL+ P +  R+  Y L+LH +R DYDR RPLY R +  M  RGPD+
Sbjct:  281 RLERRAAVNVQRCWRGM-HGRFRAKKLQAMKRGPQTYFEWADARKLATILSTFQV------WQEMLLANTNKSSYGIFYANHITGQCVWDKPVAWVEHDRQQQ-----MYYYGYTTQMLEAAVTLQSLFRMRTARVHFHRLMQGVAICRRCESDYLNDPLNLTRLGNYALYLHAIRHDYDRARPLYRRLMEYMAARGPDV 468          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A397APW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397APW9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.210e-11
Identity = 63/200 (31.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:  241 RAQLRLARLVQRCWRGCRYGR--RLRXXXXXXXXXXXAEWSEREWAAAVAAAGAPRAKKAGWQQFLLAGSMDT---MFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRVQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            R + R A  VQRCWRG  +GR    +            EW++    A + +          WQ+ LLA +  +   +FY +   G   W+ P  W+  +R +Q         G T     AA  +Q+ +R R AR    R +Q   +    E +YL+ P +  R+  Y L+LH +R DYDR RPLY R +  M  RGPD+
Sbjct:  699 RLERRAAVNVQRCWRGM-HGRFRAKKLQAMKRGPQTYFEWADARKLATILSTFQV------WQEMLLANTNKSSYGIFYANHITGQCVWDKPVAWVEHDRQQQ-----MYYYGYTTQMLEAAVTLQSLFRMRTARVHFHRLMQGVAICRRCESDYLNDPLNLTRLGNYALYLHAIRHDYDRARPLYRRLMEYMAARGPDV 886          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A3R6YBL8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YBL8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.090e-7
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  598 VQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            +Q+ +R R AR    R +Q   +  S E +YL+ P +  R+  Y+L+LH +R DYDR RPLY+R +  M  RGPD+
Sbjct:  732 LQSMFRMRTARVYFHRLMQGVSICRSCEADYLNDPLNLTRLGNYVLYLHAIRHDYDRARPLYSRLMEYMTARGPDV 807          
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Match: A0A3R6YJG5_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YJG5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-6
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  598 VQAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCVRRDYDRVRPLYARALADMERRGPDM 825
            +Q+ +R R AR    R +Q   +    E +YL+ P +  R+  Y L+LH +R DYDR RPLY R +  M  RGPD+
Sbjct:   17 LQSLFRMRTARVHFHRLMQGVAICRRCESDYLNDPLNLTRLGNYALYLHAIRHDYDRARPLYRRLMEYMAARGPDV 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10957.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S4D7H5_HETAK7.120e-1939.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6G0X0V4_9STRA1.100e-1233.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UNG6_9STRA2.920e-1235.77Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4H2J7_9STRA2.930e-1231.86Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A485LEK7_9STRA1.300e-1135.04Aste57867_19465 protein n=1 Tax=Aphanomyces stella... [more]
A0A3L6UTN4_9STRA1.690e-1131.50Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397APW9_9STRA2.210e-1131.50Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R6YBL8_9STRA5.090e-742.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R6YJG5_9STRA3.160e-640.79Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10957contigP-wetherbeei_contig10957:158..1202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTK9
PFAMsAnk_2,Ank_4,COR,Ras,Roc
Model size825
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.91e-25
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size825
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.6454408-CDS-P-wetherbeei_contig10957:157..5181683185891.6454408-CDS-P-wetherbeei_contig10957:157..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10957 158..518 -
1683185891.6563957-CDS-P-wetherbeei_contig10957:738..12021683185891.6563957-CDS-P-wetherbeei_contig10957:738..1202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10957 739..1202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10957.1.1prot_P-wetherbeei_contig10957.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10957 158..1202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10957.1.1

>prot_P-wetherbeei_contig10957.1.1 ID=prot_P-wetherbeei_contig10957.1.1|Name=mRNA_P-wetherbeei_contig10957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
AAVTVQRVVRGHQSRGRTAQERAFAAAAVVITQVARVSLRRRRRREAAAA
AAAAARIQARWRGLSARRKFLAGYPTLWWRRAQLRLARLVQRCWRGCRYG
RRLRRAAAAAAAAEQAEWSEREWAAAVAAAGAPRAKKAGWQQFLLAGSMD
TMFYRHPAAGVHQWEAPTTWLARERLEQEDRARARRDGVTAAKTAAARRV
QAAWRARLARERLRRFIQAKKLSASAEEEYLSQPRDPKRMVAYLLFLHCV
RRDYDRVRPLYARALADMERRGPDM
back to top

mRNA from alignment at P-wetherbeei_contig10957:158..1202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10957.1.1 ID=mRNA_P-wetherbeei_contig10957.1.1|Name=mRNA_P-wetherbeei_contig10957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1045bp|location=Sequence derived from alignment at P-wetherbeei_contig10957:158..1202- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGTTACGGTACAGCGCGTCGTGCGCGGCCATCAGTCGCGGGGACG CACTGCCCAGGAGCGCGCCTTTGCTGCCGCCGCCGTCGTTATCACCCAGG TCGCACGCGTCTCCCTGCGGCGGCGCCGCCGCCGCGAGGCGGCCGCCGCC GCCGCGGCGGCGGCGCGCATCCAGGCACGCTGGCGGGGCCTATCGGCGCG GCGGAAGTTTCTTGCAGGGTACCCGACGCTGTGGTGGCGGCGCGCGCAAC TGCGGCTGGCGCGGCTGGTGCAGCGCTGCTGGCGGGGGTGCCGGTACGGG CGGCGGCTGCGGCGGGCGGCGGCGGCTGCAGCGGCGGCGGAGCAGGCTGA GTGGAGCGAGCGGGAGTGGGCGGCGGCGGTGGCGGCGGCGGGCGCGCCGC GGGCCAAGAAGGCCGGGTGGCAGCAGTTCCTGCTGGCGGGCTCCATGGAC ACCATGTTCTACCGGTGAGACAAGGAATGGCTGGCATGCTTGCGGACTCT GAATCTTTCTTCATGAATAGCTAGGCGTAGCACCCAGTCACAATGCTTTG CCACTTTGCTCTCGTTGCGTGCCCTCCTTCTGTGCGCGGCTTGTTTCACC TTCCCAATCTTGTCTAACCCCCCCGCCGCGTCCTCAAGTTTCCTCTTGCT TTCGCGCCCGGAACAACAACCCATCTGCTCGCAGGCACCCGGCGGCCGGC GTCCACCAGTGGGAGGCCCCCACCACCTGGCTCGCCCGCGAACGCCTCGA GCAGGAAGATCGCGCCCGCGCCCGCCGCGACGGCGTCACCGCCGCTAAGA CCGCTGCCGCCCGCCGCGTCCAGGCCGCCTGGCGGGCCCGCCTGGCCCGG GAACGGCTGCGGCGGTTCATTCAGGCCAAAAAGTTGTCCGCGTCTGCCGA GGAAGAGTACCTTTCGCAGCCGCGAGATCCGAAACGGATGGTGGCATACC TGCTGTTTCTGCACTGCGTCAGACGGGACTACGACCGGGTGCGGCCGCTG TACGCGCGGGCGCTGGCGGACATGGAGCGGCGTGGCCCCGACATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10957:158..1202-

>mRNA_P-wetherbeei_contig10957.1.1 ID=mRNA_P-wetherbeei_contig10957.1.1|Name=mRNA_P-wetherbeei_contig10957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig10957:158..1202- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGTTACGGTACAGCGCGTCGTGCGCGGCCATCAGTCGCGGGGACG
CACTGCCCAGGAGCGCGCCTTTGCTGCCGCCGCCGTCGTTATCACCCAGG
TCGCACGCGTCTCCCTGCGGCGGCGCCGCCGCCGCGAGGCGGCCGCCGCC
GCCGCGGCGGCGGCGCGCATCCAGGCACGCTGGCGGGGCCTATCGGCGCG
GCGGAAGTTTCTTGCAGGGTACCCGACGCTGTGGTGGCGGCGCGCGCAAC
TGCGGCTGGCGCGGCTGGTGCAGCGCTGCTGGCGGGGGTGCCGGTACGGG
CGGCGGCTGCGGCGGGCGGCGGCGGCTGCAGCGGCGGCGGAGCAGGCTGA
GTGGAGCGAGCGGGAGTGGGCGGCGGCGGTGGCGGCGGCGGGCGCGCCGC
GGGCCAAGAAGGCCGGGTGGCAGCAGTTCCTGCTGGCGGGCTCCATGGAC
ACCATGTTCTACCGGCACCCGGCGGCCGGCGTCCACCAGTGGGAGGCCCC
CACCACCTGGCTCGCCCGCGAACGCCTCGAGCAGGAAGATCGCGCCCGCG
CCCGCCGCGACGGCGTCACCGCCGCTAAGACCGCTGCCGCCCGCCGCGTC
CAGGCCGCCTGGCGGGCCCGCCTGGCCCGGGAACGGCTGCGGCGGTTCAT
TCAGGCCAAAAAGTTGTCCGCGTCTGCCGAGGAAGAGTACCTTTCGCAGC
CGCGAGATCCGAAACGGATGGTGGCATACCTGCTGTTTCTGCACTGCGTC
AGACGGGACTACGACCGGGTGCGGCCGCTGTACGCGCGGGCGCTGGCGGA
CATGGAGCGGCGTGGCCCCGACATG
back to top