mRNA_P-wetherbeei_contig10955.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10955.2.1
Unique NamemRNA_P-wetherbeei_contig10955.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A7C2UCR8_9PROT (DUF2782 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UCR8_9PROT)

HSP 1 Score: 164 bits (416), Expect = 1.140e-50
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVIHS 330
            MR L +I++LC ALP     +P+ LQPIP+PXXXXXG+ELDPALEPQVTILKRGTDTVEEYR+GG+LYM+KVTPANGRPYYLID KGDG+ SRQ++ D G RPPMWVIH 
Sbjct:    1 MRRLALIVMLCAALPVFAQGKPQ-LQPIPEPXXXXXGYELDPALEPQVTILKRGTDTVEEYRIGGRLYMVKVTPANGRPYYLIDHKGDGRFSRQDSLDTGTRPPMWVIHQ 109
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A351KRP5_9GAMM (DUF2782 domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A351KRP5_9GAMM)

HSP 1 Score: 151 bits (382), Expect = 2.510e-45
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:   46 ALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVIHSW 333
            AL  DR    QPIP+PXXXXXGFELDPALEPQVTILKRG D+VEEYR+ GKLYM+KVTP +GRPYYLIDE+GDGK +RQE+ D G+RPPMWVIHSW
Sbjct:   28 ALAQDR-LKAQPIPEPXXXXXGFELDPALEPQVTILKRGEDSVEEYRISGKLYMVKVTPPHGRPYYLIDERGDGKFARQESHDLGIRPPMWVIHSW 122
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A3N5NNG6_9PROT (DUF2782 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NNG6_9PROT)

HSP 1 Score: 150 bits (378), Expect = 7.720e-45
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGAD--RPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVIHSW 333
            MR ++  ++LC A  A      RP NLQPIP+PXXXXXG ELDPALEPQVTILKRG DTVEEYR+ G+LYM+KVTP +G PYYLID++GDG  SRQE+ D GLR PMWVIHSW
Sbjct:    1 MRKIVFAVVLCFAAAAFAQTPARPPNLQPIPEPXXXXXGMELDPALEPQVTILKRGEDTVEEYRIAGRLYMVKVTPPHGVPYYLIDQRGDGTFSRQESSDTGLRVPMWVIHSW 113
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A1F4DXR7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DXR7_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.510e-44
Identity = 77/111 (69.37%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPR-NLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVIHS 330
            MR L+V+LLLC ALP     +P+ +L      XXXXXGFELDPALEPQVTILKRGTDTVEE+R+GG+LYM+KVTPA G PYY+IDEKGDG+ SRQ   D G+RPPMWVIH 
Sbjct:    1 MRRLIVVLLLCAALPVAAQTKPKPSLXXXXXXXXXXXGFELDPALEPQVTILKRGTDTVEEFRIGGRLYMIKVTPARGAPYYMIDEKGDGRFSRQYGLDSGVRPPMWVIHQ 111
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A1F4ADA8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ADA8_9PROT)

HSP 1 Score: 148 bits (373), Expect = 3.940e-44
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVIHS 330
            MRNLL IL L VALP     +P NLQPIP+ XXXXXG+E DPALEPQVTI ++G DTVEEYR+GGKLYM+KVTP+ GRPYY+ID +GDG+ SRQ+T D G+RPPMWVIH 
Sbjct:    1 MRNLLAILALSVALPLAAQTKP-NLQPIPEXXXXXXGYEPDPALEPQVTIRRQGLDTVEEYRIGGKLYMVKVTPSTGRPYYMIDHQGDGRFSRQDT-DTGIRPPMWVIHQ 108
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A2N2TS53_9PROT (DUF2782 domain-containing protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-14 TaxID=2013705 RepID=A0A2N2TS53_9PROT)

HSP 1 Score: 148 bits (373), Expect = 4.190e-44
Identity = 74/108 (68.52%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVI 324
            MR LL   LL + LP    DRP NLQP+P+PXXXXXG++ DPALEPQVTI+KRG D VEEYR+ GKLYM+KVTP +G PYYL+D+KGDG+M+RQE  D GLR PMWVI
Sbjct:    1 MRRLLFACLLALTLPVAAQDRPANLQPVPEPXXXXXGYQPDPALEPQVTIIKRGEDKVEEYRINGKLYMVKVTPPHGVPYYLVDDKGDGRMTRQEPLDSGLRVPMWVI 108
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: UPI001AC07CDF (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=UPI001AC07CDF)

HSP 1 Score: 145 bits (365), Expect = 9.430e-43
Identity = 71/108 (65.74%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVI 324
            MR L++ LL  +ALPA   +RP  LQP+P+PXXXXXGF+ DPALEPQVTI++RG D VEE+R+ G+LYM+KVTP +G PYYL+DE+GDG+M+RQE  D GLR PMWVI
Sbjct:   11 MRRLMIPLLFALALPAAAQERPAGLQPVPEPXXXXXGFQPDPALEPQVTIIRRGEDRVEEFRINGRLYMVKVTPPHGVPYYLVDERGDGRMTRQEPMDSGLRVPMWVI 118
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A363SN05_9RHOO (DUF2782 domain-containing protein n=1 Tax=Rhodocyclales bacterium TaxID=2072421 RepID=A0A363SN05_9RHOO)

HSP 1 Score: 140 bits (354), Expect = 3.180e-41
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVI 324
            MR LL+  L  +ALPA+  DRP  LQP+P+PXXXXXG++ DPALEPQVTI++RG D VEE+R+ G+LYM++VTP +G PYYL+D+KGDG+M+RQE+ D GLR PMWVI
Sbjct:    1 MRRLLISCLFALALPAMAQDRPA-LQPVPEPXXXXXGYQPDPALEPQVTIIRRGEDKVEEFRINGRLYMIRVTPPHGVPYYLVDDKGDGRMTRQESMDSGLRVPMWVI 107
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BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: UPI001BBE729C (DUF2782 domain-containing protein n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BBE729C)

HSP 1 Score: 139 bits (351), Expect = 9.120e-41
Identity = 65/108 (60.19%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGADRPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVI 324
            MR L+ + L C+ALPA  AD+P++LQP+P+      G +LD  LEPQVTI KRG DTV+EYR+GGKLYMLKVTP +G+ YYLID +GDG+ +RQE+ D G+R P+WVI
Sbjct:    1 MRRLIAVFLFCLALPAF-ADKPKDLQPLPEVPPPPAGVDLDQPLEPQVTITKRGEDTVQEYRIGGKLYMLKVTPPHGKSYYLIDNRGDGQFARQESLDSGVRVPLWVI 107
[Close]
BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Match: A0A1F4BAN5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BAN5_9PROT)

HSP 1 Score: 137 bits (346), Expect = 5.590e-40
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 MRNLLVILLLCVALPALGAD-RPRNLQPIPDPXXXXXGFELDPALEPQVTILKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFGLRPPMWVI 324
            MR LL  LLL    P      +P  LQP+   XXXXXG+ELDPALEPQVTILKRGTDT+EEYR+GGKLYM+KVTP  GRPYY++D +GDG   RQ+ +D GLRPPMWVI
Sbjct:    1 MRTLLAALLLAXXXPXXXQQAKPPALQPLXXXXXXXXGYELDPALEPQVTILKRGTDTIEEYRIGGKLYMVKVTPPGGRPYYMVDYRGDGTFMRQDNYDSGLRPPMWVI 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10955.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2UCR8_9PROT1.140e-5074.55DUF2782 domain-containing protein n=1 Tax=Betaprot... [more]
A0A351KRP5_9GAMM2.510e-4578.13DUF2782 domain-containing protein n=1 Tax=Methyloc... [more]
A0A3N5NNG6_9PROT7.720e-4569.03DUF2782 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4DXR7_9PROT1.510e-4469.37Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ADA8_9PROT3.940e-4470.91Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2N2TS53_9PROT4.190e-4468.52DUF2782 domain-containing protein n=1 Tax=Betaprot... [more]
UPI001AC07CDF9.430e-4365.74Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A363SN05_9RHOO3.180e-4164.81DUF2782 domain-containing protein n=1 Tax=Rhodocyc... [more]
UPI001BBE729C9.120e-4160.19DUF2782 domain-containing protein n=1 Tax=Sulfuric... [more]
A0A1F4BAN5_9PROT5.590e-4066.06Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10955contigP-wetherbeei_contig10955:1829..2164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1163617.SCD_n00046
PFAMsDUF2782
Model size336
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.6e-39
EggNOG OGs2C1YJ@1|root,32ZXK@2|Bacteria,1N98H@1224|Proteobacteria,2VVT5@28216|Betaproteobacteria
DescriptionProtein of unknown function (DUF2782)
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.6168182-CDS-P-wetherbeei_contig10955:1828..21641683185891.6168182-CDS-P-wetherbeei_contig10955:1828..2164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10955 1829..2164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10955.2.1prot_P-wetherbeei_contig10955.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10955 1829..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10955.2.1

>prot_P-wetherbeei_contig10955.2.1 ID=prot_P-wetherbeei_contig10955.2.1|Name=mRNA_P-wetherbeei_contig10955.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MRNLLVILLLCVALPALGADRPRNLQPIPDPPPPPPGFELDPALEPQVTI
LKRGTDTVEEYRVGGKLYMLKVTPANGRPYYLIDEKGDGKMSRQETFDFG
LRPPMWVIHSW*
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mRNA from alignment at P-wetherbeei_contig10955:1829..2164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10955.2.1 ID=mRNA_P-wetherbeei_contig10955.2.1|Name=mRNA_P-wetherbeei_contig10955.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig10955:1829..2164+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAACCTGCTAGTTATCCTGCTTTTGTGCGTCGCGCTGCCCGCGCT
GGGCGCGGACCGGCCGCGCAATCTGCAGCCGATCCCCGATCCGCCGCCGC
CGCCGCCCGGCTTCGAACTCGATCCTGCGCTCGAACCGCAGGTCACCATT
CTCAAACGCGGCACCGACACGGTCGAGGAATACCGCGTGGGCGGCAAGCT
CTACATGCTCAAGGTCACGCCCGCCAACGGCAGGCCGTATTACCTGATCG
ATGAAAAGGGCGACGGCAAAATGTCGCGCCAGGAAACCTTCGATTTCGGC
CTGCGTCCGCCGATGTGGGTCATACATTCCTGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10955:1829..2164+

>mRNA_P-wetherbeei_contig10955.2.1 ID=mRNA_P-wetherbeei_contig10955.2.1|Name=mRNA_P-wetherbeei_contig10955.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig10955:1829..2164+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAACCTGCTAGTTATCCTGCTTTTGTGCGTCGCGCTGCCCGCGCT
GGGCGCGGACCGGCCGCGCAATCTGCAGCCGATCCCCGATCCGCCGCCGC
CGCCGCCCGGCTTCGAACTCGATCCTGCGCTCGAACCGCAGGTCACCATT
CTCAAACGCGGCACCGACACGGTCGAGGAATACCGCGTGGGCGGCAAGCT
CTACATGCTCAAGGTCACGCCCGCCAACGGCAGGCCGTATTACCTGATCG
ATGAAAAGGGCGACGGCAAAATGTCGCGCCAGGAAACCTTCGATTTCGGC
CTGCGTCCGCCGATGTGGGTCATACATTCCTGGTAA
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