mRNA_P-wetherbeei_contig10953.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10953.1.1
Unique NamemRNA_P-wetherbeei_contig10953.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10953contigP-wetherbeei_contig10953:225..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size566
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.5325296-UTR-P-wetherbeei_contig10953:224..2851683185891.5325296-UTR-P-wetherbeei_contig10953:224..285Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10953 225..285 -
1683185891.5521429-UTR-P-wetherbeei_contig10953:597..7901683185891.5521429-UTR-P-wetherbeei_contig10953:597..790Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10953 598..790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.5430348-CDS-P-wetherbeei_contig10953:285..5971683185891.5430348-CDS-P-wetherbeei_contig10953:285..597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10953 286..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10953.1.1prot_P-wetherbeei_contig10953.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10953 286..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10953.1.1

>prot_P-wetherbeei_contig10953.1.1 ID=prot_P-wetherbeei_contig10953.1.1|Name=mRNA_P-wetherbeei_contig10953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MCLGNFDLVKGSFLGLHRDIRNPDWTDNSRHGEPEIGWQRFWRVMAKKKR
ELREPVASALPCTLVASRHLLSLLFPFAPQTILSAAVSHFPSFFLMLRQG
WRS*
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mRNA from alignment at P-wetherbeei_contig10953:225..790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10953.1.1 ID=mRNA_P-wetherbeei_contig10953.1.1|Name=mRNA_P-wetherbeei_contig10953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=566bp|location=Sequence derived from alignment at P-wetherbeei_contig10953:225..790- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGAAGCCCGTGTTCGAGTTCCGCAACACCATCCTCGACCAGAACTAC
CCAGCCGAGTGCACCCAGACTACCTCGGCCATCACCGGTGAATACCTGGT
TCTGTTTTCTGTAATATGTTTCTCTTTCTGCACAGAGGGGCCTCATAGTT
CTTTTTTCTGAACTGTTCGCGGCTTCTCGGGCGGTCGGGCTGAATGTGCC
TAGGCAACTTTGACCTGGTCAAAGGGTCGTTCCTTGGCTTGCATCGAGAC
ATACGCAATCCGGACTGGACGGATAATTCTCGGCATGGAGAACCAGAAAT
CGGCTGGCAGAGATTCTGGCGGGTGATGGCGAAAAAGAAGCGCGAGCTGC
GAGAGCCGGTGGCGTCCGCCCTCCCTTGCACTCTCGTGGCATCTCGCCAT
TTGCTTTCTCTCCTTTTCCCATTCGCTCCCCAAACAATTCTTTCTGCGGC
TGTTTCTCACTTTCCTTCCTTTTTTCTCATGTTGCGGCAGGGCTGGCGTT
CCTGAACGGCACGCCACTGGGCGGCGGCGCCAAGTTCACTTACAACCTCA
TCGCTAACGACTATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10953:225..790-

>mRNA_P-wetherbeei_contig10953.1.1 ID=mRNA_P-wetherbeei_contig10953.1.1|Name=mRNA_P-wetherbeei_contig10953.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig10953:225..790- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCCTAGGCAACTTTGACCTGGTCAAAGGGTCGTTCCTTGGCTTGCA
TCGAGACATACGCAATCCGGACTGGACGGATAATTCTCGGCATGGAGAAC
CAGAAATCGGCTGGCAGAGATTCTGGCGGGTGATGGCGAAAAAGAAGCGC
GAGCTGCGAGAGCCGGTGGCGTCCGCCCTCCCTTGCACTCTCGTGGCATC
TCGCCATTTGCTTTCTCTCCTTTTCCCATTCGCTCCCCAAACAATTCTTT
CTGCGGCTGTTTCTCACTTTCCTTCCTTTTTTCTCATGTTGCGGCAGGGC
TGGCGTTCCTGA
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