mRNA_P-wetherbeei_contig1095.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1095.2.1
Unique NamemRNA_P-wetherbeei_contig1095.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1095.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1095contigP-wetherbeei_contig1095:2821..4290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1348
Hectar predicted targeting categoryother localisation
Exons2
Cds size1347
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.2733166-CDS-P-wetherbeei_contig1095:2820..40131683185891.2733166-CDS-P-wetherbeei_contig1095:2820..4013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1095 2821..4013 -
1683185891.2811825-CDS-P-wetherbeei_contig1095:4136..42901683185891.2811825-CDS-P-wetherbeei_contig1095:4136..4290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1095 4137..4290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1095.2.1prot_P-wetherbeei_contig1095.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1095 2821..4290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1095.2.1

>prot_P-wetherbeei_contig1095.2.1 ID=prot_P-wetherbeei_contig1095.2.1|Name=mRNA_P-wetherbeei_contig1095.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
GKKKVKKQRTAKMTPKPGGRNGKRRASTKAFVDAPSPARGPQTKCSLDAV
SGRFSFSTKVVPAPLAWQSEMEGHQTGPDFENVRLFASIGPVSTLRHALL
PRSLHRAAWPAQAAPDCVRDGGANSDGDCADDDVFQDLAFTVPRLPAPKP
VQIAPIAVSGTPEPTTVAKQASKEGLSSDGVPGGLAAGCGAACLNLPPPG
ASGTASGLALTTGDTLHVEPPEDGAAAVLSHSPASCDDMQTWDDAAIGSE
ATAATGATTASAASESSPEAHLLCTAGAAAAIVADEGNGAGGGGAEPVFA
PLPALPVSEVSRRNSSDRGAGATGPPSPGATIIVPPDDEGLGCEATDSAE
GPPPHSLPEQLQEAPQLPEEPENLQQPQRQQLQQQQMQSVGSVDGHAEEF
AFDYWPSTQSQHTPTMGSLPLPPPPPPPPQQEPPAPYPPPQPRPAAAAP
back to top

mRNA from alignment at P-wetherbeei_contig1095:2821..4290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1095.2.1 ID=mRNA_P-wetherbeei_contig1095.2.1|Name=mRNA_P-wetherbeei_contig1095.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1470bp|location=Sequence derived from alignment at P-wetherbeei_contig1095:2821..4290- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGAAGAAGGTCAAAAAGCAAAGAACGGCAAAAATGACGCCAAAACC
GGGTGGAAGGAATGGCAAGAGAAGAGCGAGCACGAAGGCTTTCGTGGATG
CACCATCACCGGCTCGAGGGCCTCAGACGAAGTGCAGTCTTGATGCCGTC
TCAGGTAAAGACGAACGATCGCCACGACTAGCCTTTCTCTACTGCATTTT
ATGTTAAGGTTCAAGCGAGGTCCGATGACGTTTTGTTTTTTCTCTTGTTG
TTCTCCGTGTCCTGATTCTTCTGCCAGGACGATTTTCTTTCTCAACCAAG
GTTGTTCCTGCGCCGTTGGCGTGGCAAAGCGAAATGGAAGGTCACCAGAC
GGGGCCCGACTTCGAAAACGTCCGGCTTTTTGCGTCGATCGGCCCGGTCT
CGACGCTTCGCCACGCGCTTCTGCCTCGGAGCTTGCACCGGGCTGCCTGG
CCTGCACAGGCTGCGCCAGACTGCGTTCGGGACGGAGGCGCCAACAGCGA
CGGTGACTGTGCCGACGACGACGTCTTTCAAGACCTGGCGTTTACGGTGC
CGCGGCTGCCGGCGCCAAAGCCAGTGCAGATTGCACCGATTGCCGTGTCG
GGAACCCCGGAGCCAACAACCGTTGCAAAGCAGGCGTCAAAGGAAGGTTT
GTCGTCAGACGGCGTGCCTGGTGGTCTGGCTGCTGGCTGCGGAGCTGCGT
GTCTCAATCTGCCGCCACCTGGAGCAAGTGGGACTGCGTCGGGGCTCGCT
CTCACCACGGGCGACACATTGCACGTTGAGCCGCCGGAAGATGGCGCCGC
AGCTGTCCTCTCGCATTCTCCCGCGAGCTGCGACGATATGCAGACGTGGG
ATGATGCTGCAATTGGTTCCGAGGCCACTGCTGCCACCGGTGCAACCACC
GCTTCTGCTGCTTCGGAGTCATCGCCGGAGGCCCATCTGCTCTGCACAGC
CGGAGCTGCCGCTGCAATCGTTGCCGATGAAGGAAACGGCGCCGGCGGTG
GCGGTGCCGAACCAGTGTTCGCGCCGCTGCCTGCTCTGCCTGTGTCGGAG
GTGTCCCGTCGGAACAGTTCCGATCGCGGCGCGGGCGCCACGGGACCGCC
TTCGCCTGGAGCGACGATTATCGTTCCCCCGGATGATGAGGGCCTCGGCT
GCGAGGCCACGGACTCGGCAGAAGGGCCGCCGCCGCATTCTCTTCCAGAG
CAGTTGCAGGAGGCGCCGCAGCTACCGGAGGAGCCAGAGAATTTGCAGCA
GCCGCAACGACAGCAACTGCAGCAACAGCAAATGCAGAGCGTCGGTTCGG
TCGACGGCCACGCGGAGGAATTCGCCTTTGACTACTGGCCGAGCACGCAG
TCACAGCACACTCCCACGATGGGAAGTCTGCCGCTGCCACCGCCACCACC
GCCACCGCCGCAGCAGGAGCCGCCGGCGCCATATCCTCCACCGCAGCCGC
GACCAGCAGCAGCAGCGCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1095:2821..4290-

>mRNA_P-wetherbeei_contig1095.2.1 ID=mRNA_P-wetherbeei_contig1095.2.1|Name=mRNA_P-wetherbeei_contig1095.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig1095:2821..4290- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGAAGAAGGTCAAAAAGCAAAGAACGGCAAAAATGACGCCAAAACC
GGGTGGAAGGAATGGCAAGAGAAGAGCGAGCACGAAGGCTTTCGTGGATG
CACCATCACCGGCTCGAGGGCCTCAGACGAAGTGCAGTCTTGATGCCGTC
TCAGGACGATTTTCTTTCTCAACCAAGGTTGTTCCTGCGCCGTTGGCGTG
GCAAAGCGAAATGGAAGGTCACCAGACGGGGCCCGACTTCGAAAACGTCC
GGCTTTTTGCGTCGATCGGCCCGGTCTCGACGCTTCGCCACGCGCTTCTG
CCTCGGAGCTTGCACCGGGCTGCCTGGCCTGCACAGGCTGCGCCAGACTG
CGTTCGGGACGGAGGCGCCAACAGCGACGGTGACTGTGCCGACGACGACG
TCTTTCAAGACCTGGCGTTTACGGTGCCGCGGCTGCCGGCGCCAAAGCCA
GTGCAGATTGCACCGATTGCCGTGTCGGGAACCCCGGAGCCAACAACCGT
TGCAAAGCAGGCGTCAAAGGAAGGTTTGTCGTCAGACGGCGTGCCTGGTG
GTCTGGCTGCTGGCTGCGGAGCTGCGTGTCTCAATCTGCCGCCACCTGGA
GCAAGTGGGACTGCGTCGGGGCTCGCTCTCACCACGGGCGACACATTGCA
CGTTGAGCCGCCGGAAGATGGCGCCGCAGCTGTCCTCTCGCATTCTCCCG
CGAGCTGCGACGATATGCAGACGTGGGATGATGCTGCAATTGGTTCCGAG
GCCACTGCTGCCACCGGTGCAACCACCGCTTCTGCTGCTTCGGAGTCATC
GCCGGAGGCCCATCTGCTCTGCACAGCCGGAGCTGCCGCTGCAATCGTTG
CCGATGAAGGAAACGGCGCCGGCGGTGGCGGTGCCGAACCAGTGTTCGCG
CCGCTGCCTGCTCTGCCTGTGTCGGAGGTGTCCCGTCGGAACAGTTCCGA
TCGCGGCGCGGGCGCCACGGGACCGCCTTCGCCTGGAGCGACGATTATCG
TTCCCCCGGATGATGAGGGCCTCGGCTGCGAGGCCACGGACTCGGCAGAA
GGGCCGCCGCCGCATTCTCTTCCAGAGCAGTTGCAGGAGGCGCCGCAGCT
ACCGGAGGAGCCAGAGAATTTGCAGCAGCCGCAACGACAGCAACTGCAGC
AACAGCAAATGCAGAGCGTCGGTTCGGTCGACGGCCACGCGGAGGAATTC
GCCTTTGACTACTGGCCGAGCACGCAGTCACAGCACACTCCCACGATGGG
AAGTCTGCCGCTGCCACCGCCACCACCGCCACCGCCGCAGCAGGAGCCGC
CGGCGCCATATCCTCCACCGCAGCCGCGACCAGCAGCAGCAGCGCCG
back to top