mRNA_P-wetherbeei_contig1094.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1094.4.1
Unique NamemRNA_P-wetherbeei_contig1094.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1094.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1094contigP-wetherbeei_contig1094:5200..6269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size821
Hectar predicted targeting categoryother localisation
Exons2
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185890.9604733-CDS-P-wetherbeei_contig1094:5199..55591683185890.9604733-CDS-P-wetherbeei_contig1094:5199..5559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1094 5200..5559 +
1683185890.9696102-CDS-P-wetherbeei_contig1094:5808..62671683185890.9696102-CDS-P-wetherbeei_contig1094:5808..6267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1094 5809..6267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1094.4.1prot_P-wetherbeei_contig1094.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1094 5200..6267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1094.4.1

>prot_P-wetherbeei_contig1094.4.1 ID=prot_P-wetherbeei_contig1094.4.1|Name=mRNA_P-wetherbeei_contig1094.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
VGTPQGRRCGGPYSQALDGAGRNAPPQPVGAGGGRLRHTPVARGEFPAAV
AEARRVRRSRCSPQAATVAARRRRRPAGGGGGGRGGRGGIGAASASPATP
SPVEPPGQAATGGRGGAERQGHTPHRTFLPLLGAADGSRSAGLAPSPGGT
HAGSTGGVAHGCCPLDAPGCRRRLHREAAATAAASRRRAPLVRAACPGGG
GQCRLGAGRGSGGAAHGGAGLFDLARRRASVTGGAGTGRSGATDGGAANV
ALRDGPCAGPPAACSGVAGDGGV
back to top

mRNA from alignment at P-wetherbeei_contig1094:5200..6269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1094.4.1 ID=mRNA_P-wetherbeei_contig1094.4.1|Name=mRNA_P-wetherbeei_contig1094.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1070bp|location=Sequence derived from alignment at P-wetherbeei_contig1094:5200..6269+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAACGCCTCAGGGCCGTCGCTGCGGCGGCCCGTATTCTCAAGCGCT
GGACGGCGCTGGTCGAAACGCGCCGCCGCAGCCGGTCGGCGCTGGCGGAG
GCCGACTGCGCCACACTCCAGTGGCACGCGGCGAATTCCCTGCGGCGGTG
GCGGAGGCGCGCCGCGTGCGACGCAGTCGCTGTTCGCCTCAGGCAGCGAC
TGTTGCTGCGCGCCGGCGTCGACGGCCTGCGGGGGGCGGCGGAGGCGGGC
GCGGCGGCCGAGGCGGCATTGGAGCGGCATCAGCTTCTCCGGCAACACCT
TCGCCGGTGGAGCCGCCGGGTCAGGCAGCGACGGGAGGTAGAGGCGGCGC
AGAGAGACAGGTATGCAGATAAGTTTCCCAGCGTTCAAGTCCCTCTTTAA
TGCGCTTCTTTCACTTCGAAAACTTGATTCGGCAGCGCGACACACACGTT
TCTCAAGGCTTGTCACTTTTATACAACGGCTGTCATTTTCCCTGGAACTC
TCTACGCTTGCTAGACTCTGTAACGTCGTAAACTCTTGAACTCTAAATCT
ATTCACCTCTCCCCTTTTTGCTTCCCTCCGCCCTCCTCATTCATTCTGCG
TGCATTCAGGGGCATACGCCTCATCGGACTTTTCTTCCGCTTCTGGGCGC
GGCGGACGGCAGTCGCTCGGCTGGCCTTGCGCCATCGCCCGGCGGCACGC
ATGCGGGCAGCACTGGCGGCGTGGCGCACGGCTGTTGTCCGCTCGACGCA
CCTGGCTGCCGGCGCCGCCTTCACCGCGAAGCTGCTGCGACGGCAGCGGC
TTCTCGCCGTCGTGCGCCGCTGGTCCGAGCAGCGTGCCCTGGCGGCGGTG
GCCAGTGCAGGCTGGGGGCTGGCAGAGGCAGCGGCGGAGCGGCGCACGGC
GGGGCGGGGCTTTTCGACTTGGCTCGCCGCCGTGCGAGCGTCACGGGCGG
CGCGGGAACGGGGCGAAGCGGTGCGACGGACGGCGGCGCTGCGAACGTGG
CGCTCCGCGACGGGCCGTGCGCGGGCCCGCCAGCAGCATGCAGCGGCGTC
GCGGGCGACGGCGGTGTCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1094:5200..6269+

>mRNA_P-wetherbeei_contig1094.4.1 ID=mRNA_P-wetherbeei_contig1094.4.1|Name=mRNA_P-wetherbeei_contig1094.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig1094:5200..6269+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAACGCCTCAGGGCCGTCGCTGCGGCGGCCCGTATTCTCAAGCGCT
GGACGGCGCTGGTCGAAACGCGCCGCCGCAGCCGGTCGGCGCTGGCGGAG
GCCGACTGCGCCACACTCCAGTGGCACGCGGCGAATTCCCTGCGGCGGTG
GCGGAGGCGCGCCGCGTGCGACGCAGTCGCTGTTCGCCTCAGGCAGCGAC
TGTTGCTGCGCGCCGGCGTCGACGGCCTGCGGGGGGCGGCGGAGGCGGGC
GCGGCGGCCGAGGCGGCATTGGAGCGGCATCAGCTTCTCCGGCAACACCT
TCGCCGGTGGAGCCGCCGGGTCAGGCAGCGACGGGAGGTAGAGGCGGCGC
AGAGAGACAGGGGCATACGCCTCATCGGACTTTTCTTCCGCTTCTGGGCG
CGGCGGACGGCAGTCGCTCGGCTGGCCTTGCGCCATCGCCCGGCGGCACG
CATGCGGGCAGCACTGGCGGCGTGGCGCACGGCTGTTGTCCGCTCGACGC
ACCTGGCTGCCGGCGCCGCCTTCACCGCGAAGCTGCTGCGACGGCAGCGG
CTTCTCGCCGTCGTGCGCCGCTGGTCCGAGCAGCGTGCCCTGGCGGCGGT
GGCCAGTGCAGGCTGGGGGCTGGCAGAGGCAGCGGCGGAGCGGCGCACGG
CGGGGCGGGGCTTTTCGACTTGGCTCGCCGCCGTGCGAGCGTCACGGGCG
GCGCGGGAACGGGGCGAAGCGGTGCGACGGACGGCGGCGCTGCGAACGTG
GCGCTCCGCGACGGGCCGTGCGCGGGCCCGCCAGCAGCATGCAGCGGCGT
CGCGGGCGACGGCGGTGTC
back to top