mRNA_P-wetherbeei_contig10933.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A7X9AFF1_9BURK (Ribosomal silencing factor RsfS n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFF1_9BURK) HSP 1 Score: 145 bits (367), Expect = 9.220e-43 Identity = 64/111 (57.66%), Postives = 87/111 (78.38%), Query Frame = 1 Query: 7 LESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVH 339 +E+LE+AR A++ D+K+ D++V DL ++SI+CDYFV+ SAPTR+QT+ +AR I+E L G K QG EG+WILMDYGVIVVH+F+ EREFYDLEGLWR+A +V+ Sbjct: 7 VETLELARRIADLCDEKMTNDVVVLDLQNVSILCDYFVLASAPTRIQTRKVARDIDEMLSAEGLQPKSIQGMPEGAWILMDYGVIVVHLFMDREREFYDLEGLWREAAVVY 117
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A7Z9UD74_9BACT (Ribosomal silencing factor RsfS n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UD74_9BACT) HSP 1 Score: 137 bits (344), Expect = 2.070e-39 Identity = 61/110 (55.45%), Postives = 83/110 (75.45%), Query Frame = 1 Query: 7 LESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLV 336 +ESLE+A+ AA+ A + D+++ D+ D++ VCDYFVI SAPTR+QTKDIAR +E+ L+ G A R QG E SWIL+DYG++V+H+FL EREFYDLEG W DA ++ Sbjct: 1 MESLEIAKIAAQTAHEVKADDVLILDVRDMTTVCDYFVIASAPTRIQTKDIARKMEQALEIEGVAKSRIQGRDEASWILLDYGMVVLHVFLTQEREFYDLEGRWSDAEII 110
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: F6B8Q1_DESCC (Ribosomal silencing factor RsfS n=1 Tax=Desulfotomaculum nigrificans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) TaxID=868595 RepID=F6B8Q1_DESCC) HSP 1 Score: 121 bits (303), Expect = 3.550e-33 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 1 Query: 7 LESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHMDFQA 354 L E+ A + ADDK +DI V D++ +SI+CDYF+I + +R Q + +A IEE+L+ AG R +GFREG+WIL+DYG +VVH+F + ER+FY+LE LW DA +V + +A Sbjct: 3 LSPKEIVDIAHQAADDKKAKDITVLDISHISIICDYFLICTGGSRTQVQSVAEHIEEKLEEAGVKPLRKEGFREGTWILLDYGDVVVHVFQEMERDFYNLERLWGDAQVVEISAKA 118
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A355TP36_9BACT (Ribosomal silencing factor RsfS n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TP36_9BACT) HSP 1 Score: 121 bits (304), Expect = 4.640e-33 Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 13 SLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVH 339 SL+MA+A A+V KLG+D +V D++ S++CDYFVI APTR Q +DIA +I++ L G K QG + +W LMDY ++VH+F+ ER FY+LEG+W+ AP+V+ Sbjct: 18 SLDMAKAIADVCYQKLGKDTVVLDMSKDSVLCDYFVICDAPTRNQLRDIAENIDKMLSEQGIEPKSIQGKNDNAWTLMDYSSVIVHLFISGERSFYNLEGMWKSAPIVY 126
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A2N2A2H8_9FIRM (Ribosomal silencing factor RsfS n=1 Tax=Firmicutes bacterium HGW-Firmicutes-8 TaxID=2013789 RepID=A0A2N2A2H8_9FIRM) HSP 1 Score: 117 bits (293), Expect = 1.040e-31 Identity = 49/114 (42.98%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 ILLESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHM 342 ++L ++A A A+DK +D+++ D++D+S+VCDYFVI S + Q K IA ++E +L+ G R +GF++G W+L+DYG +V HIF + +R FY+LE LW DA +VH+ Sbjct: 1 MILSPDKVASLVAAAAEDKKAKDVLILDISDVSVVCDYFVICSGLSTTQVKAIAENVETKLEEQGMKKLRVEGFKDGHWVLLDYGSVVAHIFQEDDRHFYNLEHLWGDARVVHL 114
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A2N2DKM5_9FIRM (Ribosomal silencing factor RsfS n=1 Tax=Firmicutes bacterium HGW-Firmicutes-14 TaxID=2013775 RepID=A0A2N2DKM5_9FIRM) HSP 1 Score: 117 bits (293), Expect = 1.040e-31 Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 19 EMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHM 342 ++A AA A++K +D+I+ D+ D+S VCDYFVI S + Q K IA +IE++LK G R +GF++ W+L+DYG +VVH+F + +REFY+LE LW DA +VH+ Sbjct: 7 KVAAGAARAAEEKKAKDVILLDIHDISTVCDYFVICSGMSSTQVKAIAENIEKKLKEHGVMKLRMEGFKDAHWVLLDYGSVVVHVFREDDREFYNLEHLWGDARVVHL 114
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: UPI001F50C2B0 (ribosome silencing factor n=1 Tax=Acidibacillus sp. S0AB TaxID=2005001 RepID=UPI001F50C2B0) HSP 1 Score: 117 bits (293), Expect = 1.100e-31 Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 19 EMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHM 342 E A+ AA+ A+DK D+++ D+ +LSI+ DYFVI SA +R Q + IA SIEE ++ G + T+G R+G W+L+D+G ++VH+F + ER F+DLE LW DAP + M Sbjct: 7 EYAKLAADAAEDKKANDVVILDIRELSIIADYFVICSANSRTQAQAIADSIEEHMELRGVKMRGTEGHRDGKWVLLDFGDVIVHVFQEEERRFFDLERLWGDAPRLSM 114
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: UPI001957FF84 (ribosome silencing factor n=1 Tax=Desulforadius tongensis TaxID=1216062 RepID=UPI001957FF84) HSP 1 Score: 116 bits (291), Expect = 2.360e-31 Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 19 EMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVH 339 +M A A++K DI+V D++ +S++CDYF+I SA + Q K IA +I++++ G A K +G REG+W+L+DYG +VVHIF + ER FY+LE LW DA +VH Sbjct: 7 QMVDEACRAAEEKKAHDIVVLDISGVSVICDYFIICSANSTTQVKAIAENIQDKMARQGVALKHREGLREGNWVLLDYGDVVVHIFREKERHFYNLERLWGDAEVVH 113
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: A0A357VG05_9FIRM (Ribosomal silencing factor RsfS n=3 Tax=Clostridia TaxID=186801 RepID=A0A357VG05_9FIRM) HSP 1 Score: 115 bits (289), Expect = 4.340e-31 Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 4 LLESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHMD 345 + ++L +AR AA+ A DK GR++++ D+ +S++ DYFVIT + Q + I+R IE+++ AG R +G+ W+L+D+G +VVH+FL+ +R FYDLE LW DA LV ++ Sbjct: 1 MTDALRVARVAAQAAKDKRGREVVILDIRKISLIADYFVITHGTSTTQVQAISREIEDKVAEAGGRLLRREGYTSARWVLLDFGGVVVHVFLEEDRRFYDLERLWADAELVELE 114
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Match: K8DYK1_9FIRM (Ribosomal silencing factor RsfS n=3 Tax=Desulforamulus TaxID=2916693 RepID=K8DYK1_9FIRM) HSP 1 Score: 115 bits (289), Expect = 4.740e-31 Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1 Query: 7 LESLEMARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIEERLKGAGQASKRTQGFREGSWILMDYGVIVVHIFLQSEREFYDLEGLWRDAPLVHM 342 L + E+ A + ADDK DI V D++ +SI+CDYF+I + + Q + +A IEE L+ AG R +GFREGSWIL+DYG +V+H+F + ER FY+LE LW DA LV + Sbjct: 3 LSAKEIVNIAHKAADDKKATDITVLDISHISIICDYFLICTGRSSTQVQAVAEHIEETLEEAGVRPLRIEGFREGSWILLDYGDVVIHVFQEMERGFYNLERLWGDARLVEI 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10933.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10933.1.1 >prot_P-wetherbeei_contig10933.1.1 ID=prot_P-wetherbeei_contig10933.1.1|Name=mRNA_P-wetherbeei_contig10933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp MARAAAEVADDKLGRDIIVKDLTDLSIVCDYFVITSAPTRVQTKDIARSIback to top mRNA from alignment at P-wetherbeei_contig10933:87..455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10933.1.1 ID=mRNA_P-wetherbeei_contig10933.1.1|Name=mRNA_P-wetherbeei_contig10933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig10933:87..455+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10933:87..455+ >mRNA_P-wetherbeei_contig10933.1.1 ID=mRNA_P-wetherbeei_contig10933.1.1|Name=mRNA_P-wetherbeei_contig10933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig10933:87..455+ (Phaeothamnion wetherbeei SAG_119_79)back to top |