mRNA_P-wetherbeei_contig10932.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10932.2.1
Unique NamemRNA_P-wetherbeei_contig10932.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A836CJW0_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW0_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.190e-48
Identity = 97/169 (57.40%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    7 ISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAA-PARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPD 510
            + P   QPFRGLVSYA P+CFL+    P Y   R MY R WCRLN +RSA G L  LLRL EDLL+ H P L  +L  +G   P RLA PW+Q GFVG LE  +VL LWDR+LA+   L LL ALAAAV VF+  A+ AA DA  VRD  ADG+ L+ +PLLQAFLFP 
Sbjct:  443 VPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDS-LSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ 610          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: F0YBG1_AURAN (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBG1_AURAN)

HSP 1 Score: 152 bits (385), Expect = 5.330e-42
Identity = 84/168 (50.00%), Postives = 109/168 (64.88%), Query Frame = 1
Query:    1 SLISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLF 504
            S + P   QPFRG VSY  P+ F+YER EP Y  LR MYA+ WC+LN +R+A   L  L +L E L+  + P L   L  IG  P  +A PW+Q GFVGLL+ DQVL LWDR+L +   L LL  LAAA+ V++ E L +A    +V+D+ +DGS L+VVPL+Q FLF
Sbjct:  183 SAVPPCAVQPFRGFVSYTAPLTFVYEREEPIYYCLRAMYAKFWCKLNVMRTAECTLLPLCKLFEQLVIENHPKLFFYLVQIGVDPLAVALPWIQFGFVGLLDVDQVLLLWDRILGFED-LSLLPILAAAIFVYRSEKLLSATSLDDVKDMFSDGSILQVVPLIQTFLF 349          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A0G4ISX4_PLABS (Rab-GAP TBC domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISX4_PLABS)

HSP 1 Score: 140 bits (352), Expect = 9.050e-36
Identity = 76/169 (44.97%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    7 ISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPDS 513
            I P    PF   V  A P+C+L++RCE +Y V R MYAR +CRL+T+ S  G +  L +L EDL+Q+ +P +      +G  P R+  PWL   F G L  DQVL LWDR+LA+   LELLA LA+A+ +F+ +++  A  + E+RD+  DG   RV+PLLQ FLF  S
Sbjct:  387 IPPCGVVPFHHQVMLAAPLCYLFQRCEHTYFVFRHMYARYFCRLHTISSRPGTILHLCKLFEDLVQSRSPQVFYHAVEVGMPPLRVVFPWLFTAFSGYLAVDQVLTLWDRILAYDS-LELLAILASAIFLFRSKSVLNATSSDEIRDIFEDGIYFRVMPLLQHFLFDSS 554          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A7S3YGJ5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGJ5_HETAK)

HSP 1 Score: 133 bits (335), Expect = 2.540e-35
Identity = 71/162 (43.83%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    7 ISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQ 492
            + P   QPFRG  +Y  P+CFLY      Y V R ++ R WCRLN VR   G L  L +L EDL+   AP    RL  +G +P  +  PW+Q GFVG LE DQ+L LWDR++ +   L LL  LAA++++F+   +     A  +RDL  D +RL+VVPLL+
Sbjct:  114 VPPCGVQPFRGFCNYLAPLCFLYHDAPTCYGVARALWCRFWCRLNAVRGRPGTLLPLCKLFEDLVLQGAPDAFARLVALGVSPLSIVMPWIQFGFVGFLEPDQILLLWDRIIGFQS-LHLLPVLAASIIMFRSHNILKVDSADGLRDLFQDITRLKVVPLLR 274          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A8J2WGK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WGK4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.440e-34
Identity = 77/170 (45.29%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    7 ISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPDSV 516
            + P   QPFRG VSYA P+ F++ R    Y   R  YA+ +CRLN +R+    L  L  L E L+  H P L   L  +G  P  +A PW+Q GFVGLL+ +QVL LWDRLL +   L LL+ LAAA+ V++ E L   +   E R++ ADG+ L VVPLLQ FL+P+ +
Sbjct:  357 VPPCGVQPFRGFVSYAAPLTFVFGRETSLYFAFRAFYAQHFCRLNVLRTNQNTLLPLCALFERLVIEHHPRLFFYLVQVGVDPLAIALPWIQFGFVGLLDVEQVLLLWDRLLGFED-LALLSVLAAAIFVYRSEKLLQCSSLEEAREMFADGAVLEVVPLLQTFLWPEGL 525          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A0H5RE29_9EUKA (Rab-GAP TBC domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RE29_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 8.150e-33
Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 SLISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPDS 513
            ++I P    PF   V  A P+C+L+++ E +Y V R+MYAR +CRL+ + S    +  L +L EDL+Q+ +P +       G  P R+  PWL   F G L  DQVL LWDR+LA+   LELL+ LAAA+ VF+ +++  A+   E+RD+  DG+  RV+PLLQ FLF  S
Sbjct:  382 TIIPPCQIVPFHLQVMLAAPLCYLFQQAEQTYFVYRQMYARYFCRLHLISSRKDTIIYLCKLFEDLVQSDSPQVFYHAVEAGLPPLRVVFPWLFTAFSGYLAVDQVLILWDRILAYDS-LELLSVLAAAIFVFRSKSVMNASSGDEIRDIFEDGAHFRVLPLLQHFLFDSS 551          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: UPI0018864B2E (TBC1 domain family member 19 isoform X1 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018864B2E)

HSP 1 Score: 126 bits (316), Expect = 8.560e-31
Identity = 76/159 (47.80%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   28 PFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLF 504
            PF G   Y  P+CFLY+     Y+V R MY R + RL++V SA   +  L  L+E LLQ H P L   LR IGA P R+A  WL   F G L  DQ+L LWDR+L +   LEL+A LAAAV  F+ E L      A    +LAD S LRV+PL+Q+FLF
Sbjct:  368 PFHGFSMYVAPLCFLYKEPSELYSVFREMYTRYFFRLHSVSSARSGIVSLCLLLERLLQTHLPRLFHHLRRIGAQPLRIAFKWLLRAFSGYLCTDQLLFLWDRILGYDS-LELVAVLAAAVFAFRAENLMEVTSLASAEAVLADLSTLRVMPLIQSFLF 525          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A2D4MQA0_9SAUR (Rab-GAP TBC domain-containing protein (Fragment) n=2 Tax=Bifurcata TaxID=1329961 RepID=A0A2D4MQA0_9SAUR)

HSP 1 Score: 120 bits (300), Expect = 1.650e-30
Identity = 71/159 (44.65%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   28 PFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLF 504
            PF G   Y  P+CFLY      Y + R +Y R + RL+++ S S  +  L  L E+LLQ+H P L   LR IGA P R++  W+   F G L  DQ+L LWDR+L +   LE+LA LAAAV VF+   L      A    +LAD S L+V+PLLQ FLF
Sbjct:   74 PFHGFSMYVAPLCFLYNEPSKLYQIFREIYVRYFFRLHSISSHSSGIVSLCLLFENLLQSHLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLFLWDRILGYN-TLEILAVLAAAVFVFRAGNLMEVTSLAAAEAVLADLSTLKVMPLLQIFLF 231          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: UPI00199267C4 (TBC1 domain family member 19 isoform X1 n=2 Tax=Silurus meridionalis TaxID=175797 RepID=UPI00199267C4)

HSP 1 Score: 124 bits (312), Expect = 3.080e-30
Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 1
Query:   28 PFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPDSV 516
            PF G   Y  P+CFLY      Y+V R MY R + RL+++ S+   +  L    E LLQ+H P LS  L+ IGA P R+A  W+   F G L  DQ+L LWDR+L +G  LE++A LAAAV  F+ E L      A    +LAD S L+V+PLLQ FLF   +
Sbjct:  364 PFHGFSMYVAPLCFLYNEPSKLYSVFREMYVRYFFRLHSISSSPSGIVSLCLQFERLLQSHLPQLSYHLQEIGAQPLRIAFKWMVRAFSGYLSTDQLLLLWDRILGYGS-LEVVAVLAAAVFTFRAENLMEVTSLASAEAVLADLSTLKVMPLLQIFLFATGI 525          
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Match: A0A3Q3GUP7_9LABR (TBC1 domain family member 19 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3GUP7_9LABR)

HSP 1 Score: 124 bits (311), Expect = 4.900e-30
Identity = 72/163 (44.17%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   28 PFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVRSASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGLLEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDLLADGSRLRVVPLLQAFLFPDSV 516
            PF G   Y  P+CFLY      Y+V R MY R + RL+++ S+   +  L    E LLQ H P L   LR IGA P R+A  W+  GF G L  DQ+L LWDR+L +   LE++A LAAAV  F+ E L      A    +LAD S L+V+PL+Q FLF  S+
Sbjct:  383 PFHGFSMYVAPLCFLYNEPSKLYSVFREMYTRYFFRLHSISSSPSGIVSLCLQFERLLQTHLPQLFYHLRQIGAQPLRIAFKWMVRGFSGYLSTDQLLLLWDRILGYDS-LEVVAVLAAAVFAFRAENLMEVTSLASAEAVLADLSTLKVMPLIQVFLFATSI 544          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10932.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJW0_9STRA1.190e-4857.40Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
F0YBG1_AURAN5.330e-4250.00Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A0G4ISX4_PLABS9.050e-3644.97Rab-GAP TBC domain-containing protein n=1 Tax=Plas... [more]
A0A7S3YGJ5_HETAK2.540e-3543.83Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A8J2WGK4_9STRA2.440e-3445.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0H5RE29_9EUKA8.150e-3342.69Rab-GAP TBC domain-containing protein n=1 Tax=Spon... [more]
UPI0018864B2E8.560e-3147.80TBC1 domain family member 19 isoform X1 n=1 Tax=Sy... [more]
A0A2D4MQA0_9SAUR1.650e-3044.65Rab-GAP TBC domain-containing protein (Fragment) n... [more]
UPI00199267C43.080e-3044.17TBC1 domain family member 19 isoform X1 n=2 Tax=Si... [more]
A0A3Q3GUP7_9LABR4.900e-3044.17TBC1 domain family member 19 n=1 Tax=Labrus bergyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10932contigP-wetherbeei_contig10932:1587..2111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FT85
Preferred nameTBC1D19
PFAMsRabGAP-TBC
Model size525
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0008047,GO:0008150,GO:0030234,GO:0030695,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0098772
Exons1
Evalue3.57e-47
EggNOG OGs28K1A@1|root,2QSFR@2759|Eukaryota
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-06_003730.1
DescriptionGTPase activator activity
Cds size525
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185890.7514288-CDS-P-wetherbeei_contig10932:1586..21111683185890.7514288-CDS-P-wetherbeei_contig10932:1586..2111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10932 1587..2111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10932.2.1prot_P-wetherbeei_contig10932.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10932 1587..2111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10932.2.1

>prot_P-wetherbeei_contig10932.2.1 ID=prot_P-wetherbeei_contig10932.2.1|Name=mRNA_P-wetherbeei_contig10932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
SLISPLPTQPFRGLVSYAGPVCFLYERCEPSYTVLRRMYARLWCRLNTVR
SASGCLPQLLRLVEDLLQAHAPALSTRLRIIGAAPARLAAPWLQLGFVGL
LEADQVLALWDRLLAWGGRLELLAALAAAVLVFKGEALAAAADAAEVRDL
LADGSRLRVVPLLQAFLFPDSVAA*
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mRNA from alignment at P-wetherbeei_contig10932:1587..2111-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10932.2.1 ID=mRNA_P-wetherbeei_contig10932.2.1|Name=mRNA_P-wetherbeei_contig10932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig10932:1587..2111- (Phaeothamnion wetherbeei SAG_119_79)
TCTCTTATTTCTCCCCTTCCAACGCAGCCGTTCCGCGGGCTAGTGAGCTA CGCGGGGCCCGTCTGCTTCCTCTACGAGCGCTGCGAGCCGTCCTACACCG TGCTCCGGCGCATGTACGCCCGCCTCTGGTGCCGCCTCAACACCGTCCGC TCGGCGTCCGGCTGCCTCCCGCAGCTCCTGCGCCTCGTCGAAGACCTCCT GCAGGCGCATGCCCCCGCGCTCTCCACGCGCCTGCGCATTATCGGTGCGG CGCCGGCGCGTCTGGCGGCGCCGTGGCTGCAGCTGGGATTCGTCGGGCTG CTGGAAGCCGACCAGGTGCTGGCACTCTGGGACCGGCTGCTGGCGTGGGG TGGGCGGCTTGAGCTGCTGGCGGCGCTGGCGGCGGCGGTGCTGGTCTTTA AAGGGGAGGCGCTGGCGGCGGCAGCGGATGCTGCCGAGGTACGGGATTTG CTGGCGGACGGCAGCCGTCTGCGGGTGGTGCCGCTGCTGCAGGCCTTCTT GTTCCCGGACAGCGTCGCCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10932:1587..2111-

>mRNA_P-wetherbeei_contig10932.2.1 ID=mRNA_P-wetherbeei_contig10932.2.1|Name=mRNA_P-wetherbeei_contig10932.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig10932:1587..2111- (Phaeothamnion wetherbeei SAG_119_79)
TCTCTTATTTCTCCCCTTCCAACGCAGCCGTTCCGCGGGCTAGTGAGCTA
CGCGGGGCCCGTCTGCTTCCTCTACGAGCGCTGCGAGCCGTCCTACACCG
TGCTCCGGCGCATGTACGCCCGCCTCTGGTGCCGCCTCAACACCGTCCGC
TCGGCGTCCGGCTGCCTCCCGCAGCTCCTGCGCCTCGTCGAAGACCTCCT
GCAGGCGCATGCCCCCGCGCTCTCCACGCGCCTGCGCATTATCGGTGCGG
CGCCGGCGCGTCTGGCGGCGCCGTGGCTGCAGCTGGGATTCGTCGGGCTG
CTGGAAGCCGACCAGGTGCTGGCACTCTGGGACCGGCTGCTGGCGTGGGG
TGGGCGGCTTGAGCTGCTGGCGGCGCTGGCGGCGGCGGTGCTGGTCTTTA
AAGGGGAGGCGCTGGCGGCGGCAGCGGATGCTGCCGAGGTACGGGATTTG
CTGGCGGACGGCAGCCGTCTGCGGGTGGTGCCGCTGCTGCAGGCCTTCTT
GTTCCCGGACAGCGTCGCCGCCTGA
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