mRNA_P-wetherbeei_contig109.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig109.4.1
Unique NamemRNA_P-wetherbeei_contig109.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig109.4.1 vs. uniprot
Match: A0A835YKM8_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.210e-5
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  760 RSHRKKKREKERRQEVNDRFDELAALVASVETSLRLAPAAGGLAGATSSNRVDLLSRAIAAMRRLWND 963
            R  RKK RE+ RR EVNDRF+EL  L+ ++E +L   P       A + NRV+LL+RAI  MRRLW D
Sbjct:   91 RVERKKSRERMRRVEVNDRFEELQKLLTAIEPALA-PPGKAAAKPAAAVNRVELLTRAIRVMRRLWQD 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig109.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKM8_9STRA5.210e-551.47BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig109contigP-wetherbeei_contig109:10731..12993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2263
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionbHLH domain protein
Ec32 orthologEc-16_004620.1
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185889.2980547-UTR-P-wetherbeei_contig109:10730..113581683185889.2980547-UTR-P-wetherbeei_contig109:10730..11358Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig109 10731..11358 -
1683185889.3136508-UTR-P-wetherbeei_contig109:12399..129931683185889.3136508-UTR-P-wetherbeei_contig109:12399..12993Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig109 12400..12993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185889.3061087-CDS-P-wetherbeei_contig109:11358..123991683185889.3061087-CDS-P-wetherbeei_contig109:11358..12399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig109 11359..12399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig109.4.1prot_P-wetherbeei_contig109.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig109 11359..12399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig109.4.1

>prot_P-wetherbeei_contig109.4.1 ID=prot_P-wetherbeei_contig109.4.1|Name=mRNA_P-wetherbeei_contig109.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
MASGPFCHSPAPTAPVLATGTEAAAVPCPAAAVPVVNGGCKDVAAAAVAG
NAVEDRSHRKKKREKERRQEVNDRFDELAALVASVETSLRLAPAAGGLAG
ATSSNRVDLLSRAIAAMRRLWNDCGAHRVTAEQLMQRMARMQHERAWEAA
HGSPAAAARATAASALLQAKMEHVADAADESATVAATTPAAACAGGSSVA
MDGSHVAAPAVPPAAPAMVPVGAPGLSPAGPHPHALPLPPHLHHHRYHAV
HMPAGMHGVPGMPMLIALPMYMPAGAPDAAPGALKPKEDSPTVPVPAGVV
VTGGGGKPGFPAGAFSHMVPVPMPQFAVQALSADGPEEKPTHAVCA*
back to top

mRNA from alignment at P-wetherbeei_contig109:10731..12993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig109.4.1 ID=mRNA_P-wetherbeei_contig109.4.1|Name=mRNA_P-wetherbeei_contig109.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2263bp|location=Sequence derived from alignment at P-wetherbeei_contig109:10731..12993- (Phaeothamnion wetherbeei SAG_119_79)
AGGAGGGAGCGTGCCTCAAAATGGAGGCTATGGTGGAGCATGGAGACCCA
GCGGCAATGGATCACCTCCTGACGGACATCGATGACCTGTAAGTATGGCG
GCGACCTCGCGATTGCGCTTTCCAGAGGCGATTCATGCATTCTACGCCTC
AAAAAAACGCATTTCAAGAAGGATGAGCGGAAAAACCCACAAACGCGCTC
TTATCCAACGTTGACAGTGCACCGCTGCTTACCCCATCCTGCACCTCATT
AGCCTTTCATTGCGATGGAGTTTGCCGTTCGCATGAGATTCCGTTCGAAT
GGGTCGTTTTTTCCTTTTTGATCGCGCCGCTTTCTTTCTTCACCTGCTCC
CTTCCTTCCGTGCTATGGGCGTTATAGCCTGTTTGCCACATTTAACGAGC
CGCACGGCCAAGACGGCGTCGGGCTGCCGCATTCTGGCACGGAGAGGACT
GTAGAAGGCATCGACGCCGGGGATTTCGTCGGAGTCAACGATGAGGCGCG
CGTTGCGACGCACGGTCGAAAGCGCACCTTCTCGGATGTCTGCGCTGCGA
CCGCCGTTCCTTACACAGGCGCTGGCTGCGCCGCTTCCCCGCACATGGCG
TCCGGGCCCTTTTGCCACAGTCCAGCACCTACCGCACCTGTCCTCGCGAC
CGGCACAGAGGCCGCCGCCGTACCGTGCCCCGCCGCCGCCGTCCCCGTCG
TCAACGGAGGCTGCAAGGACGTCGCCGCCGCCGCCGTCGCTGGCAATGCC
GTAGAGGACCGGTCGCACCGCAAGAAGAAGCGGGAGAAGGAGCGGCGGCA
AGAAGTGAACGACCGATTCGATGAGCTGGCGGCGCTGGTGGCGTCCGTGG
AGACGAGCCTCCGCCTGGCGCCTGCCGCCGGCGGCCTGGCAGGGGCGACG
AGCAGCAACCGCGTCGACTTGTTATCGCGCGCCATCGCCGCCATGCGCCG
CCTCTGGAACGACTGTGGCGCACACCGCGTGACGGCAGAGCAGCTCATGC
AGCGTATGGCGCGCATGCAGCACGAGCGGGCGTGGGAGGCCGCGCACGGC
AGCCCCGCGGCGGCGGCGAGAGCAACGGCGGCGTCAGCGCTGCTGCAGGC
AAAGATGGAGCATGTGGCGGACGCGGCGGACGAGAGCGCAACAGTGGCGG
CGACGACGCCTGCGGCGGCGTGTGCCGGCGGCAGCTCTGTCGCAATGGAC
GGGTCGCATGTGGCGGCGCCGGCGGTGCCGCCTGCCGCACCGGCAATGGT
GCCCGTGGGGGCGCCGGGGTTATCTCCGGCGGGGCCGCACCCGCACGCGC
TGCCACTGCCTCCCCACCTGCACCACCATCGCTACCATGCGGTGCACATG
CCGGCCGGGATGCATGGCGTCCCAGGCATGCCCATGCTCATCGCGTTGCC
CATGTACATGCCCGCGGGCGCCCCGGACGCCGCTCCAGGGGCGCTGAAGC
CGAAGGAAGACTCCCCCACCGTCCCTGTCCCTGCCGGCGTCGTCGTCACC
GGCGGCGGCGGCAAGCCGGGATTCCCGGCGGGCGCGTTCTCGCACATGGT
GCCCGTCCCGATGCCGCAGTTTGCGGTGCAGGCGCTGAGCGCCGATGGCC
CGGAGGAGAAGCCTACGCACGCCGTTTGTGCCTGAGGAAGGCGGAGCGCA
GTCGGAGGGTGCCGCGGCCGCTTTTTGTGACTACGCGCAGCACTTCAAAC
CGCGAGAAGAATCTGCTTCTCGGCGGCGGCGGCGGCGGCAGCTGCGACGG
CAGGCGCTGGAGGCGCCGCAGGGTTCGTGTGCATTGGGATCGAGCGAAGT
TTTGGCTCTCTGCTTTGATACGATCGTGCTGCGCTCCGAGGCGGAAGCAG
CGATCGTACCGGCTGCGTCATTGCTGTGTTGGCGAGGCGATTCGGACTGG
GAAGGCGGGTAGTAGGATGGGTAGTAGAGGCGGAACGAGACGTGGAGGAA
AGAAGTAGAGCCGGAAAGTGATCTTCCCCGTTGCCAAGACGCGCGGATCA
GCGCGGCCGCGTTGGGCGGCGGAACAGCCGGCCAGCACGGCGTTTGGAAA
AGTAGGCGGAGAAGGCACGACGTTGCACCTGGCCGGTTGGTTAGCGGCCG
TTAGCAGGGAAGGGGAGAGGGGAGCGGTAGGCAGTCAGCTGCTGGCGAAG
CAAGGGTGCCGCTGTCACGCAGCACTTCTGAAGCGGGGGAAAGGCGGTGC
GTTCTGGCGGCGCTCTTACACAAAATTTACCAGGGCACAAACGGAACAGT
GTGCTCATCTTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig109:10731..12993-

>mRNA_P-wetherbeei_contig109.4.1 ID=mRNA_P-wetherbeei_contig109.4.1|Name=mRNA_P-wetherbeei_contig109.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig109:10731..12993- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCCGGGCCCTTTTGCCACAGTCCAGCACCTACCGCACCTGTCCT
CGCGACCGGCACAGAGGCCGCCGCCGTACCGTGCCCCGCCGCCGCCGTCC
CCGTCGTCAACGGAGGCTGCAAGGACGTCGCCGCCGCCGCCGTCGCTGGC
AATGCCGTAGAGGACCGGTCGCACCGCAAGAAGAAGCGGGAGAAGGAGCG
GCGGCAAGAAGTGAACGACCGATTCGATGAGCTGGCGGCGCTGGTGGCGT
CCGTGGAGACGAGCCTCCGCCTGGCGCCTGCCGCCGGCGGCCTGGCAGGG
GCGACGAGCAGCAACCGCGTCGACTTGTTATCGCGCGCCATCGCCGCCAT
GCGCCGCCTCTGGAACGACTGTGGCGCACACCGCGTGACGGCAGAGCAGC
TCATGCAGCGTATGGCGCGCATGCAGCACGAGCGGGCGTGGGAGGCCGCG
CACGGCAGCCCCGCGGCGGCGGCGAGAGCAACGGCGGCGTCAGCGCTGCT
GCAGGCAAAGATGGAGCATGTGGCGGACGCGGCGGACGAGAGCGCAACAG
TGGCGGCGACGACGCCTGCGGCGGCGTGTGCCGGCGGCAGCTCTGTCGCA
ATGGACGGGTCGCATGTGGCGGCGCCGGCGGTGCCGCCTGCCGCACCGGC
AATGGTGCCCGTGGGGGCGCCGGGGTTATCTCCGGCGGGGCCGCACCCGC
ACGCGCTGCCACTGCCTCCCCACCTGCACCACCATCGCTACCATGCGGTG
CACATGCCGGCCGGGATGCATGGCGTCCCAGGCATGCCCATGCTCATCGC
GTTGCCCATGTACATGCCCGCGGGCGCCCCGGACGCCGCTCCAGGGGCGC
TGAAGCCGAAGGAAGACTCCCCCACCGTCCCTGTCCCTGCCGGCGTCGTC
GTCACCGGCGGCGGCGGCAAGCCGGGATTCCCGGCGGGCGCGTTCTCGCA
CATGGTGCCCGTCCCGATGCCGCAGTTTGCGGTGCAGGCGCTGAGCGCCG
ATGGCCCGGAGGAGAAGCCTACGCACGCCGTTTGTGCCTGA
back to top