mRNA_P-wetherbeei_contig10875.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10875.1.1
Unique NamemRNA_P-wetherbeei_contig10875.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: D8LKC4_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKC4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.600e-37
Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 1
Query:   43 RKPQKAMTAAEQRFMTKALDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIEEASVPGS-DPDPFMENIVVGARVARGR 453
            RK ++A +     F   AL+VW ++  HK+AIIFRK V+ KDAPGY+E++ EPMDLSLI++RI  GA+ SL++++R   VMC NAMVFNG    Y+DY+KELR +A E IEEA  PG    DP  +++V GAR +R R
Sbjct:  284 RKKERADSVDAAHFRRIALEVWDRVYRHKFAIIFRKAVNPKDAPGYEEIIKEPMDLSLIRERIMSGALLSLDDMSRDLCVMCNNAMVFNGKDDPYFDYSKELRTYANEVIEEARRPGFVTADPGFDSVVAGARTSRAR 421          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A7S2ZZ61_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZ61_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 2.360e-17
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  100 DVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELR 351
            DVW++I+ HKYAI FRKPV + DAP Y +V+  PMDLS +KK +D+G   +  +  +  +++C+NA+ FN  GS+  + A+ELR
Sbjct:  463 DVWREISNHKYAIPFRKPVKSSDAPNYYDVIRRPMDLSTVKKMLDEGKFMNPSDFQKEMLLICSNAIQFNPRGSDIEEIARELR 546          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A0D2VKM9_CAPO3 (Brd8 protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VKM9_CAPO3)

HSP 1 Score: 86.3 bits (212), Expect = 1.820e-16
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  103 VWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKI 372
            VW+ I+ H+YA +F +PV+  + PGY  V+  PMDL+ I+KRIDDG I S  +  R   +M  NA+++N A  + Y  A E+R+ ARE+I
Sbjct:  370 VWRNISNHRYANVFLRPVTDDEVPGYSSVIKRPMDLTTIRKRIDDGTIRSTRDFLRDIYLMFANALMYNDADHDVYLMAVEMRNDAREQI 459          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A8J4PW68_9MYCE (Bromo domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PW68_9MYCE)

HSP 1 Score: 82.8 bits (203), Expect = 2.410e-15
Identity = 38/109 (34.86%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   52 QKAMTAAEQRFMTKALD-VWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIE 375
            +K   A  +R +  A+  VWK +N+H++A IFR P++ +DAP YD+V+ + MDL+ +KK +DDG   ++ E     +++  NAM +N   SE ++ A  ++ +A +++E
Sbjct:  186 KKKEEANNKRVLIGAMSKVWKSLNSHRFAYIFRYPITHEDAPDYDQVIKKRMDLTTLKKNLDDGLYHNVTEFKNEIILIFNNAMQYNAEHSEIFNMANSMKKYAEKELE 294          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: UPI00077AEF1F (bromodomain-containing protein 8-like isoform X1 n=10 Tax=Acropora TaxID=6127 RepID=UPI00077AEF1F)

HSP 1 Score: 83.2 bits (204), Expect = 2.500e-15
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   70 AEQRFMTKALDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIEEASVPGSDPDPFMENIVVGARVARG-RTDG 462
            A++ +    + VW+    HKYA +F  PV+  +APGY  VV  PMDLS IKK I++G I +  E  R  ++M  NA+++N A  + Y  A+E+RD   E+I+               I+V +++ RG R DG
Sbjct:  767 AQKTWKKSIMLVWRAAANHKYANVFLHPVTDDEAPGYHSVVFRPMDLSTIKKNIENGTIRTTSEFQRDMMLMFQNALMYNSADHDVYRMAEEMRDDVMEQIQSY---------IATQIMVDSKMLRGHRQDG 889          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A151ZF58_9MYCE (Bromodomain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZF58_9MYCE)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-14
Identity = 34/93 (36.56%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   97 LDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIE 375
            L +WK +N H++A +F+ P++  +AP YD+V+   MDLS +KK ++DG  ++L+E  +  V++  NAM +N   S+ Y  A+ ++ FA +++E
Sbjct:  169 LKIWKTLNGHRHAYVFKYPITHDEAPDYDKVIKHRMDLSKLKKNVEDGVYSTLQEFHKDVVLIFKNAMEYNEEKSDIYLMAETMKKFAEKELE 261          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: UPI00109B764C (bromodomain-containing protein 8 isoform X1 n=3 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B764C)

HSP 1 Score: 80.1 bits (196), Expect = 1.470e-14
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   70 AEQRFMTKALDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIE 375
            A++ +    + VW+    HKYA +F  PV+  +APGY  +V  PMDL+ IKK I++G+I +  E  R  ++M  NA+++N A  + Y  A+E+RD   ++I+
Sbjct:  203 AQKNWKKSIMLVWRAAANHKYANVFLHPVTDDEAPGYHGIVFRPMDLTTIKKNIENGSIRTTSEFQRDMMLMFQNALMYNNADHDVYRMAEEMRDDVMDQIQ 304          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A2W1B266_HELAM (Bromo domain-containing protein (Fragment) n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1B266_HELAM)

HSP 1 Score: 76.6 bits (187), Expect = 1.720e-14
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  121 AHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKEL 348
            AHKYA +F +P+S  +APGY  VV  PMDLS I++ ID+G I + E+  R  ++M +NA+++N +    Y  AKE+
Sbjct:    3 AHKYASLFLRPISDDEAPGYSMVVKRPMDLSTIRRNIDNGVIRTTEQFQRDVLLMLSNALMYNSSEHSVYTMAKEM 78          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A6V2FV78_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FV78_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.730e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   97 LDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIEEASVPGSD 399
            L +WK+I++H+ A +FRKPV+A++APGY + +  PMDLSLI++ I  G I S  +L     ++C N + FNG  S+Y    +E   F  + I  A    S+
Sbjct:  318 LSLWKRISSHRTATVFRKPVNAREAPGYSDRIIFPMDLSLIRRMITTGMIVSYADLHERIGLICHNCVKFNGRESDYGLVTREFESFVDDTIVTAVTTASE 418          
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Match: A0A2B4RYS1_STYPI (Tetratricopeptide repeat protein 28 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RYS1_STYPI)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-14
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   70 AEQRFMTKALDVWKKINAHKYAIIFRKPVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAMVFNGAGSEYYDYAKELRDFAREKIE 375
            A++ +    + VW+    HKYA +F  PV+  +APGY  +V  PMDLS IKK I++G I +  E  R  ++M  NA+++N A  + Y  A+E+ D   E+I+
Sbjct:  867 AQKTWKKSIMLVWRAAANHKYANVFLHPVTDDEAPGYHSIVFRPMDLSTIKKNIENGTIRTTSEFQRDMMLMFQNALMYNSADHDVYRMAEEMGDDVMEQIQ 968          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10875.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKC4_ECTSI3.600e-3752.17Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2ZZ61_9RHOD2.360e-1746.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0D2VKM9_CAPO31.820e-1644.44Brd8 protein n=1 Tax=Capsaspora owczarzaki (strain... [more]
A0A8J4PW68_9MYCE2.410e-1534.86Bromo domain-containing protein n=1 Tax=Polysphond... [more]
UPI00077AEF1F2.500e-1536.36bromodomain-containing protein 8-like isoform X1 n... [more]
A0A151ZF58_9MYCE1.050e-1436.56Bromodomain-containing protein n=1 Tax=Tieghemoste... [more]
UPI00109B764C1.470e-1437.25bromodomain-containing protein 8 isoform X1 n=3 Ta... [more]
A0A2W1B266_HELAM1.720e-1444.74Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A6V2FV78_9STRA1.730e-1439.60Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A2B4RYS1_STYPI4.300e-1438.24Tetratricopeptide repeat protein 28 n=1 Tax=Stylop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10875contigP-wetherbeei_contig10875:47..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKC4
PFAMsAAA_16,Bromodomain,EPL1,ORC4_C,PHD,PHD_2,PWWP,zf-HC5HC2H_2
Model size534
Max annot lvl2759|Eukaryota
KEGG koko:K02606,ko:K11348,ko:K11380
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.9e-38
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota
Descriptionchromatin organization
Cds size534
COG categoryP
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185888.0793648-CDS-P-wetherbeei_contig10875:46..4271683185888.0793648-CDS-P-wetherbeei_contig10875:46..427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10875 47..427 -
1683185888.0923076-CDS-P-wetherbeei_contig10875:909..10621683185888.0923076-CDS-P-wetherbeei_contig10875:909..1062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10875 910..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10875.1.1prot_P-wetherbeei_contig10875.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10875 47..1062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10875.1.1

>prot_P-wetherbeei_contig10875.1.1 ID=prot_P-wetherbeei_contig10875.1.1|Name=mRNA_P-wetherbeei_contig10875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
GSGGGGGRGGRSARRKPQKAMTAAEQRFMTKALDVWKKINAHKYAIIFRK
PVSAKDAPGYDEVVHEPMDLSLIKKRIDDGAIASLEELARCAVVMCTNAM
VFNGAGSEYYDYAKELRDFAREKIEEASVPGSDPDPFMENIVVGARVARG
RTDGGNGGGNGGGSGGGGGGSVSGGRSS
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mRNA from alignment at P-wetherbeei_contig10875:47..1062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10875.1.1 ID=mRNA_P-wetherbeei_contig10875.1.1|Name=mRNA_P-wetherbeei_contig10875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-wetherbeei_contig10875:47..1062- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCGGTGGCGGCCGCGGTGGCAGGTCTGCACGGCGGAAGCC GCAGAAGGCCATGACGGCGGCGGAACAGCGCTTCATGACGAAGGCGCTCG ACGTGTGGAAGAAGATCAACGCACATAAATACGCCATAATATTCAGAAAG CCGGTGAGTTTTGACAGAAGAGAGACTTAGCTGGCTAGCTTTGACGCTCT TGGCCGTGGTAATGCCTCGCGTCCTCCTGTTGGTCAACCCAAAATTCGAT GTTGTCGGAGTCTTAGCTCTGTTTGGCCATCACTTGTCGAGGGATTTCAC ACAGTTGCCGCTCTTCCGGTTCGTTTCCAGCAGTGAGAAGATTTATTTAT TGGCGGTGCGTTCGCTTTTTGCGCATCGGCGGATCGCCTGGGAACTAGGA CGGTACGCGTGGCAGCTCTATGCTTCTCGTGTTAAACTCTTCAACTTTCT TCCGTATAACCTTCGTTGTGGGCGCTTCTCTTTTGAGCCTTTCCCGCTCC CACCTCCGTGTGTCTCAGCCCCTTCCTGTCTTTTTTCGCCCTTCCCCACC CGCCTTTCCCTGCCCCGCCCCGCCTGGTCCGCCCAACCCGCTCCCGATCG GCCAACCCGACTTCTACCCCGCCTGCCTACTGCAGGTGAGCGCGAAGGAC GCGCCGGGCTACGACGAGGTGGTGCACGAGCCGATGGACCTCTCCTTGAT CAAGAAGCGTATCGACGACGGAGCCATCGCCTCGCTCGAGGAGCTGGCGC GCTGCGCGGTCGTCATGTGCACCAACGCCATGGTCTTCAACGGCGCCGGC TCCGAGTATTACGACTACGCCAAAGAGCTGCGGGACTTTGCGCGGGAGAA GATCGAAGAGGCGTCCGTTCCCGGATCCGACCCGGACCCGTTCATGGAGA ACATCGTCGTCGGCGCGCGCGTGGCTCGCGGCAGAACGGACGGCGGGAAT GGTGGCGGAAACGGTGGCGGAAGCGGCGGCGGTGGGGGCGGCTCTGTGAG TGGAGGGCGGAGCAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10875:47..1062-

>mRNA_P-wetherbeei_contig10875.1.1 ID=mRNA_P-wetherbeei_contig10875.1.1|Name=mRNA_P-wetherbeei_contig10875.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig10875:47..1062- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCGGTGGCGGCCGCGGTGGCAGGTCTGCACGGCGGAAGCC
GCAGAAGGCCATGACGGCGGCGGAACAGCGCTTCATGACGAAGGCGCTCG
ACGTGTGGAAGAAGATCAACGCACATAAATACGCCATAATATTCAGAAAG
CCGGTGAGCGCGAAGGACGCGCCGGGCTACGACGAGGTGGTGCACGAGCC
GATGGACCTCTCCTTGATCAAGAAGCGTATCGACGACGGAGCCATCGCCT
CGCTCGAGGAGCTGGCGCGCTGCGCGGTCGTCATGTGCACCAACGCCATG
GTCTTCAACGGCGCCGGCTCCGAGTATTACGACTACGCCAAAGAGCTGCG
GGACTTTGCGCGGGAGAAGATCGAAGAGGCGTCCGTTCCCGGATCCGACC
CGGACCCGTTCATGGAGAACATCGTCGTCGGCGCGCGCGTGGCTCGCGGC
AGAACGGACGGCGGGAATGGTGGCGGAAACGGTGGCGGAAGCGGCGGCGG
TGGGGGCGGCTCTGTGAGTGGAGGGCGGAGCAGT
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