mRNA_P-wetherbeei_contig10874.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10874.2.1
Unique NamemRNA_P-wetherbeei_contig10874.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A3C0TYE4_9PROT (Ribosomal protein L11 methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYE4_9PROT)

HSP 1 Score: 169 bits (428), Expect = 1.010e-49
Identity = 91/128 (71.09%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRKVKL 387
            MAAAKLWRR V ASDID IA  +  ENA RN LA F+  V A GF HPAI   APYDL+LANILARPLMRLA PMA  +  GGY +LSGLLR+QEAAV SAY +QGLFL RRFL NEWSTLLLRK  L
Sbjct:  170 MAAAKLWRRPVTASDIDRIATRIAGENAARNRLAPFINTVNAPGFTHPAITADAPYDLILANILARPLMRLARPMANHLTKGGYAVLSGLLRSQEAAVLSAYRSQGLFLARRFLSNEWSTLLLRKRAL 297          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A353LN80_9PROT (Ribosomal protein L11 methyltransferase n=7 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN80_9PROT)

HSP 1 Score: 136 bits (342), Expect = 1.200e-36
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLL 372
            MAAAKLW   V+ASDIDP+A+ VTR+NA +NGLAA + PV A GF  P +   APYDL++ANILARPLM LA P+ R +A  G VILSGLL  Q AA+ +AY  QG++L RR    +W TL+L
Sbjct:  192 MAAAKLWHTPVLASDIDPVAIQVTRQNARQNGLAALITPVVAPGFQAPPLMRNAPYDLIIANILARPLMALAHPLHRHLARQGVVILSGLLNDQAAAILAAYRLQGIYLYRRIRLGDWCTLIL 314          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A7U6Y5J9_9PROT (Ribosomal protein L11 methyltransferase n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y5J9_9PROT)

HSP 1 Score: 128 bits (322), Expect = 8.170e-34
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 GMAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRK 378
            G+AAAKLWR +V+ASDIDP ++ VT+ NA  N  +AF+  VTA G+ H  IA  APYDL+ ANILARPLMRLA  +   + PGG  +L+GLL  QE  V SA+  QGL LERR L + W+ L+LRK
Sbjct:  172 GLAAAKLWRCRVMASDIDPESMRVTKANARDNRASAFVAAVTAPGYRHWEIARRAPYDLIFANILARPLMRLAKDLKAHLKPGGVAVLAGLLERQERMVLSAHQMQGLSLERRILIDGWACLVLRK 297          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A2E9Y8R7_9PROT (Ribosomal protein L11 methyltransferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y8R7_9PROT)

HSP 1 Score: 128 bits (321), Expect = 1.080e-33
Identity = 71/125 (56.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRK 378
            +A A+LWR K +ASD DP AV V + NA  N L  ++RPV A GFAHPA++  APYDL++ANILARPL RLA  +A  +APGG V+LSGLL  Q+A VR+AY  +GL L +R    EW TL L K
Sbjct:  174 LAMARLWRVKTVASDSDPWAVDVAKANARLNHLHGYVRPVRADGFAHPALSTGAPYDLIVANILARPLQRLAPAIAGHLAPGGRVVLSGLLAKQDAQVRAAYLNRGLHLVQRRRLGEWLTLELAK 298          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A522V7J9_9PROT (Ribosomal protein L11 methyltransferase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A522V7J9_9PROT)

HSP 1 Score: 128 bits (321), Expect = 1.230e-33
Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 GMAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRKVKL 387
            G+AAA+LWR  V+ASDIDP ++ VT+ NA  N  A F+  VTA G+ H A    APYDL+ ANILARPLMRLA  + + + PGG  +L+GLL  QE  V SA+  QGL LERR L + W+ L+LRK  L
Sbjct:  172 GLAAARLWRASVLASDIDPESMRVTKSNAQDNRAAQFLTAVTAPGYRHDATQRRAPYDLIFANILARPLMRLAKDLKQHLKPGGVAVLAGLLERQERMVLSAHLMQGLCLERRILIDGWACLVLRKRNL 300          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A4R2Q4V5_9RHOB (Ribosomal protein L11 methyltransferase n=1 Tax=Rhodovulum marinum TaxID=320662 RepID=A0A4R2Q4V5_9RHOB)

HSP 1 Score: 127 bits (319), Expect = 1.830e-33
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRK 378
            MAAA+LW+  V+ASDIDP+AV V   N   NGLA  +R + AAGF HP +  AAPYDLV ANIL  PLM LA  MA R+APGGY ILSGLL  Q   V + YG  GL +  R    +W TL LRK
Sbjct:  164 MAAARLWQVPVLASDIDPVAVEVAEANVAANGLAGRVRCLEAAGFDHPELDAAAPYDLVFANILKAPLMALAPDMAARIAPGGYAILSGLLVEQGDEVAACYGETGLIVHEREEIGDWVTLCLRK 288          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: UPI001D0BA859 (50S ribosomal protein L11 methyltransferase n=2 Tax=Acidisoma TaxID=512381 RepID=UPI001D0BA859)

HSP 1 Score: 126 bits (317), Expect = 3.800e-33
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRK 378
            MAAAKL  R VIA+DIDP +V VT++NA  NG+A  +RP  A G+   A +  APYDLV ANILARPL  +A  ++R + PGGY IL+GLL TQE  V +A+  QGL L+ RF   +W+ LLLRK
Sbjct:  168 MAAAKLLHRPVIATDIDPWSVRVTQQNAALNGVAKLIRPALADGWKSRATSAGAPYDLVFANILARPLCSMAYALSRHLKPGGYAILAGLLATQERMVLAAHRRQGLILDTRFPEGQWTALLLRK 292          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A7W6WBZ6_9PROT (Ribosomal protein L11 methyltransferase n=2 Tax=Roseospira visakhapatnamensis TaxID=390880 RepID=A0A7W6WBZ6_9PROT)

HSP 1 Score: 124 bits (312), Expect = 2.250e-32
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLL 372
            MAAA+ WRR V+A D+D  A  V R+NA RNGL A +R + A GF   A+  AAP+DL+LANILARPL  +A   AR +APGG ++LSGLL  QE  VR+AY  QGL L  R + + W+TL++
Sbjct:  171 MAAARAWRRPVLAVDVDDEAARVARDNARRNGLGARVRTLRADGFRGAAVRAAAPFDLILANILARPLTAMAPAAARALAPGGRIVLSGLLAAQETRVRNAYARQGLHLRSRLVLDTWTTLVM 293          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: UPI0015F458E1 (50S ribosomal protein L11 methyltransferase n=1 Tax=Aureimonas sp. ME7 TaxID=2744252 RepID=UPI0015F458E1)

HSP 1 Score: 124 bits (311), Expect = 2.780e-32
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   13 AKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRKVKL 387
            AKL RR V+A+DIDP+AV V REN  +NG+  F+   TA GFA PA  GA P+DL++ANILA PLMRLA  MAR ++ GG V+LSG+L  Q  AV SAY  QGLF  +   R EW TL L + +L
Sbjct:  165 AKLARRPVLATDIDPVAVAVARENVRQNGVHRFVTTATATGFASPAFHGATPFDLIVANILAGPLMRLAPEMARHLSRGGDVVLSGILDRQRDAVLSAYRIQGLFHRKTLRRGEWVTLHLTQNRL 289          
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Match: A0A2N6APH1_9HYPH (Ribosomal protein L11 methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6APH1_9HYPH)

HSP 1 Score: 124 bits (311), Expect = 2.850e-32
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    4 MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAIAGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRSAYGTQGLFLERRFLRNEWSTLLLRKV 381
            +AAAK+ RR++IASDIDP+AV V   NA  NG+A  +RP TA+GF HP  A   P+DL+LANILA PL RLA  + R + PGG VILSGLL  Q A V +AY  Q +    R  R  W+TL LRK 
Sbjct:  164 IAAAKILRREIIASDIDPMAVEVAAANAGLNGVAPLLRPFTASGFHHPEFAARGPFDLILANILAGPLTRLAPDIRRHLCPGGTVILSGLLNEQAARVLAAYRIQNIVPTARIDREGWTTLTLRKA 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10874.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYE4_9PROT1.010e-4971.09Ribosomal protein L11 methyltransferase n=1 Tax=Al... [more]
A0A353LN80_9PROT1.200e-3658.54Ribosomal protein L11 methyltransferase n=7 Tax=Al... [more]
A0A7U6Y5J9_9PROT8.170e-3456.35Ribosomal protein L11 methyltransferase n=1 Tax=Rh... [more]
A0A2E9Y8R7_9PROT1.080e-3356.80Ribosomal protein L11 methyltransferase n=1 Tax=Rh... [more]
A0A522V7J9_9PROT1.230e-3354.26Ribosomal protein L11 methyltransferase n=1 Tax=Rh... [more]
A0A4R2Q4V5_9RHOB1.830e-3356.80Ribosomal protein L11 methyltransferase n=1 Tax=Rh... [more]
UPI001D0BA8593.800e-3355.2050S ribosomal protein L11 methyltransferase n=2 Ta... [more]
A0A7W6WBZ6_9PROT2.250e-3253.66Ribosomal protein L11 methyltransferase n=2 Tax=Ro... [more]
UPI0015F458E12.780e-3256.0050S ribosomal protein L11 methyltransferase n=1 Ta... [more]
A0A2N6APH1_9HYPH2.850e-3254.76Ribosomal protein L11 methyltransferase n=1 Tax=Hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10874contigP-wetherbeei_contig10874:1866..2258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_1364
Preferred nameprmA
PFAMsPrmA
Model size393
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02687
Hectar predicted targeting categorymitochondrion
Exons1
Evalue4.59e-33
EggNOG OGsCOG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2TTP3@28211|Alphaproteobacteria,4BQKD@82117|unclassified Alphaproteobacteria
DescriptionRibosomal protein L11 methyltransferase
Cds size390
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185888.0330143-CDS-P-wetherbeei_contig10874:1865..22551683185888.0330143-CDS-P-wetherbeei_contig10874:1865..2255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10874 1866..2255 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185888.043612-UTR-P-wetherbeei_contig10874:2255..22581683185888.043612-UTR-P-wetherbeei_contig10874:2255..2258Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10874 2256..2258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10874.2.1prot_P-wetherbeei_contig10874.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10874 1866..2255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10874.2.1

>prot_P-wetherbeei_contig10874.2.1 ID=prot_P-wetherbeei_contig10874.2.1|Name=mRNA_P-wetherbeei_contig10874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MAAAKLWRRKVIASDIDPIAVHVTRENAVRNGLAAFMRPVTAAGFAHPAI
AGAAPYDLVLANILARPLMRLATPMARRVAPGGYVILSGLLRTQEAAVRS
AYGTQGLFLERRFLRNEWSTLLLRKVKLR*
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mRNA from alignment at P-wetherbeei_contig10874:1866..2258-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10874.2.1 ID=mRNA_P-wetherbeei_contig10874.2.1|Name=mRNA_P-wetherbeei_contig10874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig10874:1866..2258- (Phaeothamnion wetherbeei SAG_119_79)
GGCATGGCGGCGGCAAAACTCTGGCGGCGCAAGGTTATCGCCAGCGACAT TGACCCGATAGCGGTGCATGTCACCCGTGAAAATGCGGTGCGCAACGGCC TGGCCGCTTTTATGCGCCCGGTAACTGCGGCAGGGTTTGCGCACCCGGCC ATTGCCGGCGCCGCCCCCTATGATCTGGTGCTGGCGAATATTCTGGCGCG GCCATTAATGCGGCTGGCAACGCCCATGGCGCGGCGCGTTGCCCCCGGTG GCTATGTAATTCTATCGGGGCTTCTGCGCACACAGGAAGCCGCCGTCCGC AGCGCCTATGGAACACAGGGGCTTTTCCTGGAGCGGCGCTTTTTACGCAA TGAATGGTCTACTTTACTTCTTCGTAAAGTAAAATTGCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10874:1866..2258-

>mRNA_P-wetherbeei_contig10874.2.1 ID=mRNA_P-wetherbeei_contig10874.2.1|Name=mRNA_P-wetherbeei_contig10874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig10874:1866..2258- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGCAAAACTCTGGCGGCGCAAGGTTATCGCCAGCGACATTGA
CCCGATAGCGGTGCATGTCACCCGTGAAAATGCGGTGCGCAACGGCCTGG
CCGCTTTTATGCGCCCGGTAACTGCGGCAGGGTTTGCGCACCCGGCCATT
GCCGGCGCCGCCCCCTATGATCTGGTGCTGGCGAATATTCTGGCGCGGCC
ATTAATGCGGCTGGCAACGCCCATGGCGCGGCGCGTTGCCCCCGGTGGCT
ATGTAATTCTATCGGGGCTTCTGCGCACACAGGAAGCCGCCGTCCGCAGC
GCCTATGGAACACAGGGGCTTTTCCTGGAGCGGCGCTTTTTACGCAATGA
ATGGTCTACTTTACTTCTTCGTAAAGTAAAATTGCGCTAG
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