mRNA_P-wetherbeei_contig10870.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10870.1.1
Unique NamemRNA_P-wetherbeei_contig10870.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10870contigP-wetherbeei_contig10870:265..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size973
Hectar predicted targeting categoryother localisation
Exons1
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.9044662-UTR-P-wetherbeei_contig10870:264..2871683185887.9044662-UTR-P-wetherbeei_contig10870:264..287Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10870 265..287 -
1683185887.9223697-UTR-P-wetherbeei_contig10870:893..12371683185887.9223697-UTR-P-wetherbeei_contig10870:893..1237Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10870 894..1237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.915244-CDS-P-wetherbeei_contig10870:287..8931683185887.915244-CDS-P-wetherbeei_contig10870:287..893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10870 288..893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10870.1.1prot_P-wetherbeei_contig10870.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10870 288..893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10870.1.1

>prot_P-wetherbeei_contig10870.1.1 ID=prot_P-wetherbeei_contig10870.1.1|Name=mRNA_P-wetherbeei_contig10870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MLPQPLLTDAVVTVERWCPRRQRRDSSRRYARGIRLAVAASPPPRHLGGL
LRVVGLADRDVPRRGGGGGVRACDGVAAAREISVKADAARAHGAAADAGA
AGVTLRRAAGGEQDVRCCIGALLTGGEVYWRPNKCDSRLMATPLARYVPG
RTPVQELSPATMADAIRLLLNDGSLWFSPETPSRVRCPLAPFARGAALNS
R*
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mRNA from alignment at P-wetherbeei_contig10870:265..1237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10870.1.1 ID=mRNA_P-wetherbeei_contig10870.1.1|Name=mRNA_P-wetherbeei_contig10870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=973bp|location=Sequence derived from alignment at P-wetherbeei_contig10870:265..1237- (Phaeothamnion wetherbeei SAG_119_79)
AGCCCTGCGCACCATTGTCGCTTTGCAAAAAGATGCAACTCTTCGTCATA
CCTCCCTCCTTAGGGAATTGCGCCGCTCCCATCCACCGGAGAGTCCTATT
TTGCGAATCCGATGGTGCTTTACTACACTATCTAAGGAAGAATCGCATCG
GGAAGCTCTTGTTTCTTTCTCGGTCTTGGCACTCGCTCTTCTTTAATGTT
TCTCTTTCATCGGAACCTGCAGCGCCTTTGGGATGAACTCGACGTTTTCG
ACGCCCTCTCCCTTTTCTTTCCTTGGCACAGAGACAGACAGAAGACACCT
GCGACAGGGGACGTGTGGCGGACAGCGGTAGCGCGGAATGGCCCATGCTT
CCCCAGCCGCTACTCACCGATGCAGTTGTTACAGTAGAGAGATGGTGCCC
ACGCCGCCAACGTCGCGATAGCAGCCGCCGCTATGCTCGCGGTATTCGCC
TTGCCGTCGCGGCCTCTCCACCTCCGCGGCACCTCGGCGGCCTTCTCCGA
GTCGTCGGTCTGGCAGACCGCGACGTCCCGCGACGCGGCGGCGGCGGCGG
CGTCAGGGCTTGCGACGGCGTGGCCGCCGCGCGAGAAATATCTGTGAAAG
CCGATGCCGCGCGCGCTCACGGAGCGGCTGCTGACGCCGGCGCAGCTGGT
GTCACTCTGCGGCGAGCTGCCGGCGGCGAGCAGGATGTGCGGTGCTGCAT
TGGCGCGCTGTTGACGGGCGGCGAGGTCTACTGGCGCCCCAACAAATGCG
ACTCGCGCCTGATGGCGACTCCGCTCGCCCGGTACGTGCCCGGGCGGACG
CCGGTGCAAGAACTGAGCCCGGCAACCATGGCGGACGCGATTCGGCTGCT
TCTGAACGATGGCAGTCTCTGGTTTTCGCCGGAGACTCCATCTCGAGTCA
GGTGTCCGCTGGCGCCTTTTGCCCGTGGAGCGGCGCTGAATTCCAGATAG
CGTTGGCGACCGCACCAGATGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10870:265..1237-

>mRNA_P-wetherbeei_contig10870.1.1 ID=mRNA_P-wetherbeei_contig10870.1.1|Name=mRNA_P-wetherbeei_contig10870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig10870:265..1237- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCCCCAGCCGCTACTCACCGATGCAGTTGTTACAGTAGAGAGATG
GTGCCCACGCCGCCAACGTCGCGATAGCAGCCGCCGCTATGCTCGCGGTA
TTCGCCTTGCCGTCGCGGCCTCTCCACCTCCGCGGCACCTCGGCGGCCTT
CTCCGAGTCGTCGGTCTGGCAGACCGCGACGTCCCGCGACGCGGCGGCGG
CGGCGGCGTCAGGGCTTGCGACGGCGTGGCCGCCGCGCGAGAAATATCTG
TGAAAGCCGATGCCGCGCGCGCTCACGGAGCGGCTGCTGACGCCGGCGCA
GCTGGTGTCACTCTGCGGCGAGCTGCCGGCGGCGAGCAGGATGTGCGGTG
CTGCATTGGCGCGCTGTTGACGGGCGGCGAGGTCTACTGGCGCCCCAACA
AATGCGACTCGCGCCTGATGGCGACTCCGCTCGCCCGGTACGTGCCCGGG
CGGACGCCGGTGCAAGAACTGAGCCCGGCAACCATGGCGGACGCGATTCG
GCTGCTTCTGAACGATGGCAGTCTCTGGTTTTCGCCGGAGACTCCATCTC
GAGTCAGGTGTCCGCTGGCGCCTTTTGCCCGTGGAGCGGCGCTGAATTCC
AGATAG
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