mRNA_P-wetherbeei_contig10869.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10869.2.1
Unique NamemRNA_P-wetherbeei_contig10869.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D7FLL1_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 8.760e-18
Identity = 62/174 (35.63%), Postives = 81/174 (46.55%), Query Frame = 1
Query:    1 MLERERTYDLALHYLQLLLAAPALAASVWRPRYWLRVIVDYSHMGRQLEALLAAEQALLALQFQV---QRLAVPPLRWKRPPPPALLEGHALLMQLPLAPPRPGPDPEA--------------AGRDGARP-MSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            ++ER++ YD A HYL +LL A +   SV RPRYW+R++ D  H  R + AL A E+AL             A P +  + P   A  EG     +      R G                    G  G  P  SLE+ VL  ML E  P W+GLH+EN   L LF LLCWD ++
Sbjct:  625 LMERDKDYDSAFHYLDILLQASSQRLSVHRPRYWVRLVTDLGHKKRSMAALQACEKALAEASLPPPAESTAASPAVTMRTPAVEAAQEGFPERREAGEGEGRVGGSEGGXXXXXXXXXXXXXXGGSAGIAPGTSLEQAVLNAMLAELEPGWKGLHAENSICLGLFALLCWDALF 798          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8SYS7_SELML (Fanconi-associated nuclease n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SYS7_SELML)

HSP 1 Score: 84.3 bits (207), Expect = 6.300e-16
Identity = 68/169 (40.24%), Postives = 89/169 (52.66%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGH---ALLMQLPLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LE+ER Y  A++ L+ LL+         R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+       +M  PL     G      G DG +  S+E+  L+    E G  W+G+HSE+G  LTLFGLL WDVI+
Sbjct:  455 LEKERRYAEAINLLKQLLSMQYCPG---RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFNVRGGDRIALQRRVLRLGKPPRRWKVPPYAALLKKKHKVVTIMGRPLNNAN-GMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGWKGVHSESGIWLTLFGLLMWDVIF 618          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8SXA8_SELML (Fanconi-associated nuclease n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SXA8_SELML)

HSP 1 Score: 83.2 bits (204), Expect = 1.550e-15
Identity = 67/169 (39.64%), Postives = 91/169 (53.85%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGHALLMQL---PLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LE+ER Y  A++ L+ LL+         R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+    ++++   PL     G      G DG +  S+E+  L+    E G  W+G+HSE+G  LTLFGLL WDVI+
Sbjct:  339 LEKERRYAEAVNLLKQLLSMQYCPG---RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFNVRGGDRVALQRRVLRLGKPPRRWKVPPYAALLKKKHKVVRIMGRPLNNAN-GMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGWKGVHSESGIWLTLFGLLMWDVIF 502          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8SYT0_SELML (Fanconi-associated nuclease n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SYT0_SELML)

HSP 1 Score: 82.8 bits (203), Expect = 2.160e-15
Identity = 67/169 (39.64%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGH---ALLMQLPLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LE+ER Y  A++  + LL+         R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+       +M  PL     G      G DG +  S+E+  L+    E G  W+G+HSE+G  LTLFGLL WDVI+
Sbjct:  524 LEKERRYAEAINLFKQLLSMQYCPG---RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFSVRGGDRIALQRRVLRLGKPPRRWKVPPYAALLKKKQKVVTIMGRPLNNAN-GMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGWKGVHSESGIWLTLFGLLMWDVIF 687          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8S707_SELML (Fanconi-associated nuclease n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S707_SELML)

HSP 1 Score: 82.8 bits (203), Expect = 2.190e-15
Identity = 67/169 (39.64%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGH---ALLMQLPLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LE+ER Y  A++  + LL+         R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+       +M  PL     G      G DG +  S+E+  L+    E G  W+G+HSE+G  LTLFGLL WDVI+
Sbjct:  520 LEKERRYAEAINLFKQLLSMQYCPG---RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFSVRGGDRIALQRRVLRLGKPPRRWKVPPYAALLKKKQKVVTIMGRPLNNAN-GMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGWKGVHSESGIWLTLFGLLMWDVIF 683          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: W7U0K5_9STRA (Fanconi-associated nuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0K5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.940e-14
Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 1
Query:    1 MLERERTYDLALHYLQLLLAAPALAASVWRPRYWLRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGHALLMQLP----------------LAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            +LER+R +  A+HYL+++L          R  +  R+++D  H  R  EAL A E AL          L LQ +   LAV P RWK+P  PAL     L +++                 LA          AGR+G  P   EE+       +AG  WRG H ENG  L+LFG+LCWDV+W
Sbjct:  625 LLERDRKHAQAVHYLKIILDGSEPLPWSLRGHFHSRLVLDLVHCNRPGEALAACEHALADPRVDGEDRLFLQAKCLSLAVAPRRWKKPTFPALQTAPVLELKMAEVQGWRQKGKSLEDSVLACLLQREGDGMAGREGCFPGVREEDP-----QQAG-HWRGAHWENGLMLSLFGILCWDVLW 800          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8SX99_SELML (Fanconi-associated nuclease (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SX99_SELML)

HSP 1 Score: 79.7 bits (195), Expect = 2.240e-14
Identity = 57/140 (40.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   88 RPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGHALLMQLPLAPPRP--GPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+    ++ +   PP    G      G DG +  S+E+  L+    E G  W+G+HSE+G  LTLFGL  WDVI+
Sbjct:  184 RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFNVRGGDRIALQRRVLRLGKPPRRWKVPPYGALLKKKHKVVTIMGRPPNNANGMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGWKGVHSESGIWLTLFGLFMWDVIF 322          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: A0A830D301_9LAMI (Fanconi-associated nuclease n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D301_9LAMI)

HSP 1 Score: 77.8 bits (190), Expect = 1.230e-13
Identity = 67/171 (39.18%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQALL----------ALQFQVQRLAVPPLRWKRPP-----PPALLEGHALLMQLPLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LERE+ Y  A++ L+ LL       S  R  YW LR+ VD  H+GR  ++L  AE  LL          ALQ +V RL  PP RWK P         +LE H     L     + G      G DG R   +EE  L+    E G  WRG+HSE G  LT+FG+L WDVI+
Sbjct:  623 LEREKRYTDAINLLKQLLNT---FISDRRRGYWSLRLSVDLEHLGRLDDSLQVAEDGLLDPWVRAGARIALQRRVIRLGKPPRRWKIPSYSKSVKRKILEVHVQGRPLNC---KTGAKSIFYGEDGQR-CGVEELALQYYAGEGGGGWRGVHSEGGIWLTIFGILMWDVIF 786          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: D8SYS9_SELML (Fanconi-associated nuclease n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SYS9_SELML)

HSP 1 Score: 75.9 bits (185), Expect = 5.570e-13
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    4 LERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQAL----------LALQFQVQRLAVPPLRWKRPPPPALLEGHALLMQLP--LAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            LE+ER Y  A++  + LL+         R  YW LR+ +D  H+ R  E+LL AE  L          +ALQ +V RL  PP RWK PP  ALL+    ++ +   L     G      G DG +  S+E+  L+    E G   +G+HSE+G  LTLFGLL WDVI+
Sbjct:  452 LEKERRYAEAINLFKQLLSMQYCPG---RRGYWTLRLSIDLEHLQRLEESLLVAENGLNDFNVRGGDRIALQRRVLRLGKPPRRWKVPPYAALLKKKHKVVTIMGRLLNNANGMKSRFYGYDGQQ-CSVEDLALQYYAGEDGGGRKGVHSESGIWLTLFGLLMWDVIF 615          
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Match: A0A199VH63_ANACO (Fanconi-associated nuclease (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VH63_ANACO)

HSP 1 Score: 75.5 bits (184), Expect = 7.070e-13
Identity = 64/174 (36.78%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    7 ERERTYDLALHYLQLLLAAPALAASVWRPRYW-LRVIVDYSHMGRQLEALLAAEQALL----------ALQFQVQRLAVPPLRWKRPPPPALLE---------GHALLMQLPLAPPRPGPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLLCWDVIW 468
            ERER Y+ A+  L+ LL+      S  R  YW LR+ VD  HMGR  E+LL AE+ +L          ALQ +V RL  PP RWK P     ++         G  L+ ++       G      G DG     +E+  L+    E G  WRG+HSE+G  +T+FGLL WDV++
Sbjct:  206 ERERRYEDAIGLLKGLLSR---ITSDSRRGYWMLRLSVDLEHMGRLNESLLVAEEGVLDKWVRAGSKMALQRRVLRLCKPPRRWKTPNYAESIKRIIKEVNIMGRPLICEV-------GAKNVFYGYDGEL-CGVEQLALQYYAEEGGG-WRGIHSESGIWMTIFGLLMWDVLF 367          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10869.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FLL1_ECTSI8.760e-1835.63Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
D8SYS7_SELML6.300e-1640.24Fanconi-associated nuclease n=8 Tax=Selaginella mo... [more]
D8SXA8_SELML1.550e-1539.64Fanconi-associated nuclease n=1 Tax=Selaginella mo... [more]
D8SYT0_SELML2.160e-1539.64Fanconi-associated nuclease n=2 Tax=Selaginella mo... [more]
D8S707_SELML2.190e-1539.64Fanconi-associated nuclease n=3 Tax=Selaginella mo... [more]
W7U0K5_9STRA1.940e-1435.16Fanconi-associated nuclease n=2 Tax=Monodopsidacea... [more]
D8SX99_SELML2.240e-1440.71Fanconi-associated nuclease (Fragment) n=2 Tax=Sel... [more]
A0A830D301_9LAMI1.230e-1339.18Fanconi-associated nuclease n=1 Tax=Phtheirospermu... [more]
D8SYS9_SELML5.570e-1338.10Fanconi-associated nuclease n=1 Tax=Selaginella mo... [more]
A0A199VH63_ANACO7.070e-1336.78Fanconi-associated nuclease (Fragment) n=1 Tax=Ana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10869contigP-wetherbeei_contig10869:495..1319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLL1
PFAMsHIRAN,VRR_NUC
Model size493
Max annot lvl2759|Eukaryota
KEGG koko:K15363
KEGG Pathwayko03460,map03460
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.44e-18
EggNOG OGsKOG2143@1|root,KOG2143@2759|Eukaryota
EC3.1.4.1
Descriptionphosphodiesterase I activity
Cds size492
COG categoryS
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.8577173-CDS-P-wetherbeei_contig10869:494..6651683185887.8577173-CDS-P-wetherbeei_contig10869:494..665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10869 495..665 +
1683185887.8693733-CDS-P-wetherbeei_contig10869:860..10361683185887.8693733-CDS-P-wetherbeei_contig10869:860..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10869 861..1036 +
1683185887.877291-CDS-P-wetherbeei_contig10869:1174..13191683185887.877291-CDS-P-wetherbeei_contig10869:1174..1319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10869 1175..1319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10869.2.1prot_P-wetherbeei_contig10869.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10869 495..1319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10869.2.1

>prot_P-wetherbeei_contig10869.2.1 ID=prot_P-wetherbeei_contig10869.2.1|Name=mRNA_P-wetherbeei_contig10869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MLERERTYDLALHYLQLLLAAPALAASVWRPRYWLRVIVDYSHMGRQLEA
LLAAEQALLALQFQVQRLAVPPLRWKRPPPPALLEGHALLMQLPLAPPRP
GPDPEAAGRDGARPMSLEENVLRKMLHEAGPEWRGLHSENGPTLTLFGLL
CWDVIWGLNGDSDS
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mRNA from alignment at P-wetherbeei_contig10869:495..1319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10869.2.1 ID=mRNA_P-wetherbeei_contig10869.2.1|Name=mRNA_P-wetherbeei_contig10869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig10869:495..1319+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGCGCGAGCGGACGTACGATTTGGCGCTGCACTACCTGCAGCT GCTGCTGGCGGCGCCGGCCCTCGCTGCTTCGGTCTGGCGCCCGCGCTACT GGCTCCGCGTCATCGTCGACTACTCCCACATGGGCCGCCAGCTCGAGGCC CTGCTTGCGGCGGAACAGGCTGTCGCTGAGGCCGCGGGCGACTGCAGCGC TGGGGGTGGTGGCGGCTGCGCTGGCGGCGGTCTGAAGAGCGGCATCGGCA GCGGCGGTGGTGGCGGCGGCGCTGGCGGCGGCGGCGCAGGCAGCTCCGGC AATGGCCGAGCGGTCATCGACGGGCCAGATTCGGCGGTCGCGGCCGCCGC CTTTCCGCTGTGCGAGCTGCTGGCGCTGCAATTCCAAGTGCAGCGCCTCG CGGTGCCGCCGCTGCGGTGGAAGCGGCCGCCGCCGCCGGCCCTACTGGAG GGGCATGCCCTGCTGATGCAGCTGCCGCTGGCGCCGCCGCGGCCCGGGCC GGACCCGGAGGCGGCGGGCCGCGACGGGGCCAGGCCTATGAGGTCCCACA GCCGTTTGCCGGGAGCTTCTGGCGGGCAAGCAGCAGCTGGGGCAGTGGTG GCGGTGCCGGCGGGTGCAGCAGCGACTGGGGCAGTGGCAGGGGAGGCGGT AGCTGGAGCGGCGGCGGAGAGGCGGTGGAGCCTCGAGGAGAATGTGCTGC GCAAGATGCTTCACGAGGCGGGGCCGGAGTGGCGCGGCCTGCACTCTGAG AATGGCCCCACATTGACCCTTTTTGGATTACTATGCTGGGACGTGATTTG GGGCCTCAACGGGGACAGCGATAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10869:495..1319+

>mRNA_P-wetherbeei_contig10869.2.1 ID=mRNA_P-wetherbeei_contig10869.2.1|Name=mRNA_P-wetherbeei_contig10869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig10869:495..1319+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGCGCGAGCGGACGTACGATTTGGCGCTGCACTACCTGCAGCT
GCTGCTGGCGGCGCCGGCCCTCGCTGCTTCGGTCTGGCGCCCGCGCTACT
GGCTCCGCGTCATCGTCGACTACTCCCACATGGGCCGCCAGCTCGAGGCC
CTGCTTGCGGCGGAACAGGCTCTGCTGGCGCTGCAATTCCAAGTGCAGCG
CCTCGCGGTGCCGCCGCTGCGGTGGAAGCGGCCGCCGCCGCCGGCCCTAC
TGGAGGGGCATGCCCTGCTGATGCAGCTGCCGCTGGCGCCGCCGCGGCCC
GGGCCGGACCCGGAGGCGGCGGGCCGCGACGGGGCCAGGCCTATGAGCCT
CGAGGAGAATGTGCTGCGCAAGATGCTTCACGAGGCGGGGCCGGAGTGGC
GCGGCCTGCACTCTGAGAATGGCCCCACATTGACCCTTTTTGGATTACTA
TGCTGGGACGTGATTTGGGGCCTCAACGGGGACAGCGATAGC
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