mRNA_P-wetherbeei_contig10868.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10868.1.1
Unique NamemRNA_P-wetherbeei_contig10868.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10868contigP-wetherbeei_contig10868:125..1097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size731
Hectar predicted targeting categorysignal peptide
Exons2
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.805728-CDS-P-wetherbeei_contig10868:124..4621683185887.805728-CDS-P-wetherbeei_contig10868:124..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10868 125..462 -
1683185887.8130255-CDS-P-wetherbeei_contig10868:705..9881683185887.8130255-CDS-P-wetherbeei_contig10868:705..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10868 706..988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.8223488-UTR-P-wetherbeei_contig10868:988..10971683185887.8223488-UTR-P-wetherbeei_contig10868:988..1097Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10868 989..1097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10868.1.1prot_P-wetherbeei_contig10868.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10868 125..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10868.1.1

>prot_P-wetherbeei_contig10868.1.1 ID=prot_P-wetherbeei_contig10868.1.1|Name=mRNA_P-wetherbeei_contig10868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MAGFKWRHGKFICWRVFYTVSAFLHPRWAASIPIHPPPLRLRSLPCCRCS
PPAGVAGVRSVLGGHLRVHKVVLPDDSGRRCGEALHAQFLPHDAGPGVRQ
RLRGDRGGHRRRGGTRHNRHGICRGDGLRAGRRRSGSRSVFLLTLCALFS
SSVKTRASALLPALSCVSCRRARSERAAVPAACPRRAGRPGDAIWRCLWL
HATPTLC
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mRNA from alignment at P-wetherbeei_contig10868:125..1097-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10868.1.1 ID=mRNA_P-wetherbeei_contig10868.1.1|Name=mRNA_P-wetherbeei_contig10868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=973bp|location=Sequence derived from alignment at P-wetherbeei_contig10868:125..1097- (Phaeothamnion wetherbeei SAG_119_79)
GAAAGTTACTTCTCGGTCTGTTTAAGCGCCGTCCATTTGCTCTAGGTCTA
GATGGCAATGCCTACAATAGCCGCCGCCAGCGCTGAACGCTGTCTTTGTG
TTCCGCTAGATGGCTGGCTTTAAGTGGCGCCACGGCAAATTTATATGCTG
GCGTGTTTTCTATACCGTTTCTGCCTTTTTGCACCCACGGTGGGCTGCTT
CCATTCCCATCCACCCGCCGCCCTTACGCTTGCGGTCTCTTCCCTGCTGC
CGCTGTTCGCCGCCAGCAGGTGTCGCTGGCGTGCGATCCGTTCTGGGAGG
GCACCTCCGAGTACACAAAGTCGTTCTTCCCGACGACAGCGGCCGACGCT
GCGGCGAAGCTCTCCACGCGCAATTCCTTCCTCATGACGCAGGTTAGTTT
TTTTTGCTGGCGGTTGGCGGCGGGCACGAGTGACGTAGTCTAATTAGTCG
ATGTTTGATTTTCCGCCTAGGGTTGGCTAGGAGCAGTGCGCTGTGAGAAG
TTGTTGCTCTGGCGAAACTTTAGCCGGAAATCTTTTTAATCTGCGTTGTC
TTAAAGCATGAGATTAAGAAAGTGCCATTATTGCCAAAGCCAAACGCGAT
TTGTCGGCTGCTCCTCTTGTCTAACCGAACCACAGGACCCGGCGTTCGCC
AACGCCTGCGCGGAGATCGTGGCGGACATCGGAGGCGCGGTGGGACTCGC
CATAACCGACATGGCATCTGCCGAGGAGATGGCCTGCGTGCTGGACGCCG
ACGATCTGGCAGCAGATCCGTATTTCTTCTGACGCTCTGCGCCCTCTTTT
CTTCGTCTGTCAAAACGAGAGCTTCTGCACTGCTGCCTGCGCTGTCGTGC
GTCTCTTGCCGGCGGGCCAGATCGGAGCGGGCGGCGGTACCCGCCGCATG
TCCGCGCCGAGCCGGGAGGCCTGGCGACGCGATATGGCGCTGTTTGTGGC
TACATGCCACTCCGACGCTTTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10868:125..1097-

>mRNA_P-wetherbeei_contig10868.1.1 ID=mRNA_P-wetherbeei_contig10868.1.1|Name=mRNA_P-wetherbeei_contig10868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig10868:125..1097- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGCTTTAAGTGGCGCCACGGCAAATTTATATGCTGGCGTGTTTT
CTATACCGTTTCTGCCTTTTTGCACCCACGGTGGGCTGCTTCCATTCCCA
TCCACCCGCCGCCCTTACGCTTGCGGTCTCTTCCCTGCTGCCGCTGTTCG
CCGCCAGCAGGTGTCGCTGGCGTGCGATCCGTTCTGGGAGGGCACCTCCG
AGTACACAAAGTCGTTCTTCCCGACGACAGCGGCCGACGCTGCGGCGAAG
CTCTCCACGCGCAATTCCTTCCTCATGACGCAGGACCCGGCGTTCGCCAA
CGCCTGCGCGGAGATCGTGGCGGACATCGGAGGCGCGGTGGGACTCGCCA
TAACCGACATGGCATCTGCCGAGGAGATGGCCTGCGTGCTGGACGCCGAC
GATCTGGCAGCAGATCCGTATTTCTTCTGACGCTCTGCGCCCTCTTTTCT
TCGTCTGTCAAAACGAGAGCTTCTGCACTGCTGCCTGCGCTGTCGTGCGT
CTCTTGCCGGCGGGCCAGATCGGAGCGGGCGGCGGTACCCGCCGCATGTC
CGCGCCGAGCCGGGAGGCCTGGCGACGCGATATGGCGCTGTTTGTGGCTA
CATGCCACTCCGACGCTTTGC
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