mRNA_P-wetherbeei_contig1086.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A3C0TWE3_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWE3_9PROT) HSP 1 Score: 402 bits (1034), Expect = 6.970e-140 Identity = 195/225 (86.67%), Postives = 218/225 (96.89%), Query Frame = 1 Query: 25 TLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 +LPVLTPDGGL+RYLQEIR+FPVLDPDEEYMLAKRWREHGDT+AAH+MVTSHLRLVAK+AMGYRGYGLPIGEVISEGN+GLMQ+VKRFEPEKGFRLSTYAMWWIRA+IQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQI AL+DGDMTSEQV LIA++L+V EQ+VT+MNQRL GQDNSLNAPLRMDA+GEWQDWLVD+ PDQE++LG+SEE+ LR+ LLE+A Sbjct: 10 SLPVLTPDGGLARYLQEIRRFPVLDPDEEYMLAKRWREHGDTDAAHRMVTSHLRLVAKMAMGYRGYGLPIGEVISEGNIGLMQAVKRFEPEKGFRLSTYAMWWIRAAIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQIQALDDGDMTSEQVRLIADKLSVSEQDVTSMNQRLTGQDNSLNAPLRMDADGEWQDWLVDENPDQETLLGESEEYNLRYALLEEA 234
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A353LTL2_9PROT (RNA polymerase sigma factor RpoH n=7 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LTL2_9PROT) HSP 1 Score: 388 bits (996), Expect = 4.390e-134 Identity = 191/230 (83.04%), Postives = 211/230 (91.74%), Query Frame = 1 Query: 1 MAETREKATLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLL 690 MA T+ LPVLTPDGGL+RYLQEIRQFP+L+P+EEYMLAK WREH DT+AAHK+VTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEP+KGFRL+TYAMWWIRA+IQEYILRSWSLVKIGTTAAQKKLFFNLRRVK QI ALE+GDMT EQV LIA++LNV E +VT+MNQR+AG DNSLNAPLR D EGEWQDWLVD+TPDQE+ LG+SEEF LRH +L Sbjct: 1 MANTKN---LPVLTPDGGLARYLQEIRQFPMLEPEEEYMLAKSWREHNDTDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPDKGFRLATYAMWWIRAAIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKGQIQALEEGDMTPEQVQLIADKLNVSESDVTSMNQRMAGHDNSLNAPLRADTEGEWQDWLVDETPDQETQLGESEEFTLRHKML 227
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A2D4VF19_9HYPH (RNA polymerase sigma factor RpoH n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VF19_9HYPH) HSP 1 Score: 360 bits (925), Expect = 2.790e-123 Identity = 179/221 (81.00%), Postives = 197/221 (89.14%), Query Frame = 1 Query: 31 PVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAE-GEWQDWLVDDTPDQESVLGDSEEFKLRHNLL 690 P P+G LSRYLQEIR+FP+L+P EEYMLAKRW+EH D+EAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQ+VKRFEPEKGFRL+TYAMWWIRASIQEYILRSWSLVK+GTTAAQKKLFFNLR+VK QI A+EDGD+ EQVT IA+RL V E EV +MN+R+AG DNSLNAPLR D+E GEWQDWLVDD PDQES LGDSEE LR +L Sbjct: 7 PAPNPEGSLSRYLQEIRKFPMLEPQEEYMLAKRWKEHEDSEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPEKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKVKGQIQAIEDGDLRHEQVTEIADRLGVTEDEVISMNRRMAGPDNSLNAPLRQDSESGEWQDWLVDDAPDQESELGDSEEMNLRREML 227
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A6N6VNW9_9HYPH (RNA polymerase sigma factor RpoH n=3 Tax=Parvibaculum TaxID=256616 RepID=A0A6N6VNW9_9HYPH) HSP 1 Score: 358 bits (919), Expect = 2.200e-122 Identity = 176/225 (78.22%), Postives = 201/225 (89.33%), Query Frame = 1 Query: 28 LPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEG-EWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 +P +P+G LSRYLQEIR+FP+L+P EEYMLAKRW+EH D+EAAHK+VTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQ+VKRFEPEKGFRL+TYAMWWIRASIQEYILRSWSLVK+GTTAAQKKLFFNLR+VK QI A+E+GD+ E VT IA+RL V E+EVT+MN+RL+G DNSLNAPLR D+EG EWQDWLVDD+ DQE+ LGD EE LRH +L A Sbjct: 5 MPAPSPEGSLSRYLQEIRKFPMLEPQEEYMLAKRWKEHEDSEAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPEKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKVKGQIQAIEEGDLHPEHVTYIADRLGVTEEEVTSMNRRLSGPDNSLNAPLRQDSEGGEWQDWLVDDSADQETTLGDQEEMGLRHEMLAQA 229
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A7Y8SQT8_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8SQT8_9PROT) HSP 1 Score: 352 bits (903), Expect = 6.610e-120 Identity = 171/226 (75.66%), Postives = 198/226 (87.61%), Query Frame = 1 Query: 22 ATLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 + LP L+ +GGLSRYL EIR+FP+L+PDEEYMLAKRWRE DTEAAH++VTSHLRLVAKIAMGYRGYGLP+ E+ISEGNVGLMQ+VKRFEPEKGFRL+TYAMWWIRA+IQEYILRSWSLVKIGTTAAQKKLFFNLRR+K QI A+++GD+ +QVT IA +L VPEQEV +MN+RLA DNSLNAPLR D +GEWQDWLVD+ DQE++L + EE R LLEDA Sbjct: 3 SNLPTLSGEGGLSRYLAEIRKFPMLEPDEEYMLAKRWREDEDTEAAHQLVTSHLRLVAKIAMGYRGYGLPVAEIISEGNVGLMQAVKRFEPEKGFRLATYAMWWIRAAIQEYILRSWSLVKIGTTAAQKKLFFNLRRIKGQIEAIDEGDLHPDQVTTIATKLGVPEQEVVSMNRRLAAPDNSLNAPLRQDGDGEWQDWLVDEGTDQETLLAEREELDERRELLEDA 228
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A2E2QJV4_9PROT (RNA polymerase sigma factor RpoH n=6 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QJV4_9PROT) HSP 1 Score: 350 bits (898), Expect = 2.700e-119 Identity = 167/226 (73.89%), Postives = 201/226 (88.94%), Query Frame = 1 Query: 22 ATLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 +TLPVLTP+GGLSRYLQEIR+FP+L+ EEYMLAK W++HGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPI E+ISEGNVG+MQ+VKRFEPEKGFRLSTYAMWWIRA+IQEYILR+WSLVK+GTTAAQKKLFFNLR++K QI A+++GDM++EQV I+ +L V E EV NMN+RL D+SLNAP+R ++EGEW DWL D+TP+QE+V ++EE K R +LE+A Sbjct: 5 STLPVLTPEGGLSRYLQEIRKFPMLEQSEEYMLAKAWKDHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIAELISEGNVGMMQAVKRFEPEKGFRLSTYAMWWIRAAIQEYILRTWSLVKMGTTAAQKKLFFNLRKIKGQIEAIDEGDMSAEQVKTISKKLGVSEDEVINMNRRLTAPDHSLNAPMRAESEGEWMDWLEDETPNQETVYAENEELKSRRAMLENA 230
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: UPI00146A2C5E (RNA polymerase sigma factor RpoH n=2 Tax=Sneathiella TaxID=510690 RepID=UPI00146A2C5E) HSP 1 Score: 349 bits (895), Expect = 7.460e-119 Identity = 166/224 (74.11%), Postives = 197/224 (87.95%), Query Frame = 1 Query: 28 LPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 +P LTP+GGLSRYLQEIR+FP+L+PDEEYMLAK WR+ D+EAAHKMVTSHLRLVAKIAMGYRGYGLP+GE+I+EGNVG+MQ+VKRFEPEKGFRLSTYAMWWIRA+IQEYILR+WSLVK+GTTAAQKKLFFNLR++K QI A+++GDMT EQV I+ +L V E EV NMN+RL D+SLN+P+R D+EGEW DWL DDTPDQE+V ++EE K R +LE A Sbjct: 6 MPTLTPEGGLSRYLQEIRKFPMLEPDEEYMLAKAWRDREDSEAAHKMVTSHLRLVAKIAMGYRGYGLPVGELIAEGNVGMMQAVKRFEPEKGFRLSTYAMWWIRAAIQEYILRTWSLVKMGTTAAQKKLFFNLRKIKGQIQAIDEGDMTHEQVKTISTKLGVSETEVINMNRRLTAPDHSLNSPMRADSEGEWMDWLEDDTPDQETVYAENEELKSRRAMLESA 229
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A2E5KRC5_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KRC5_9PROT) HSP 1 Score: 348 bits (894), Expect = 1.100e-118 Identity = 165/227 (72.69%), Postives = 200/227 (88.11%), Query Frame = 1 Query: 19 KATLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 K +PV++P+GGLSRYLQEIR FP+LD +EEY+LAKRWREH D ++AH +VTSHLRLVAKIAMGYRGYGLP+GE+ISEGNVGLMQ+VKRFEPEKGFRL+TYAMWWIRASIQEYILRSWSLVK+GTT AQKKLFFNLR++K Q+ A+E+GD+ + V IA++L+V E +V MN+RL+G D+SLNAP+R+D EGEWQDWLVD+TPDQE+ LG++EE R NLL DA Sbjct: 3 KNLIPVISPEGGLSRYLQEIRNFPMLDAEEEYILAKRWREHDDVDSAHTLVTSHLRLVAKIAMGYRGYGLPVGELISEGNVGLMQAVKRFEPEKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTTAQKKLFFNLRKLKGQLKAIEEGDLHPDTVKTIADKLDVSEDDVVQMNRRLSGADHSLNAPMRVDGEGEWQDWLVDETPDQETALGETEELGRRRNLLADA 229
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A0A3M0XWM2_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XWM2_9PROT) HSP 1 Score: 347 bits (891), Expect = 3.240e-118 Identity = 167/224 (74.55%), Postives = 199/224 (88.84%), Query Frame = 1 Query: 28 LPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEGEWQDWLVDDTPDQESVLGDSEEFKLRHNLLEDA 699 LPVL +G LSRYLQEIR+FP+L+ DEEY+LAKRWREHGD EAAHK+VTSHLRLVAKIAMGYRGYGLP+ E+ISEGNVG+MQ+VKRF+PE+GFRL+TYAMWWIRA+IQEYIL SWSLVK+GTTAAQKKLFFNLR++K Q+ A+E+GD+ EQVT IA LNVPE +V NMN+RLA D+SLNAPLR+D +GEWQDWLVD++ DQES+L D+EE + R LLE+A Sbjct: 6 LPVLVTEGNLSRYLQEIRKFPMLEADEEYILAKRWREHGDIEAAHKLVTSHLRLVAKIAMGYRGYGLPLSELISEGNVGMMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKLKGQMQAIEEGDLQPEQVTKIAETLNVPEVDVVNMNRRLAAPDHSLNAPLRIDGDGEWQDWLVDESEDQESLLADAEELEQRRALLEEA 229
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Match: A7HV40_PARL1 (RNA polymerase sigma factor RpoH n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HV40_PARL1) HSP 1 Score: 348 bits (893), Expect = 7.690e-118 Identity = 171/221 (77.38%), Postives = 196/221 (88.69%), Query Frame = 1 Query: 31 PVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTEAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQSVKRFEPEKGFRLSTYAMWWIRASIQEYILRSWSLVKIGTTAAQKKLFFNLRRVKNQISALEDGDMTSEQVTLIANRLNVPEQEVTNMNQRLAGQDNSLNAPLRMDAEG-EWQDWLVDDTPDQESVLGDSEEFKLRHNLL 690 P P+G LSRYLQEIR+FP+L+P EEYMLAKRWREH DTEAAH++VTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQ+VKRFEPE+GFRL+TYAMWWIRASIQEYILRSWSLVK+GTTAAQKKLFFNLR+VK QI A+E+GD+ EQV +I++RL V E EV +MN+RL+G DNSLNAPLR D+EG EWQDWLVDDT DQE+ LG++EE R +L Sbjct: 46 PAPNPEGSLSRYLQEIRKFPMLEPQEEYMLAKRWREHEDTEAAHQLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPERGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKVKGQIQAIEEGDLHPEQVKVISDRLGVTEDEVISMNRRLSGPDNSLNAPLRQDSEGGEWQDWLVDDTADQEATLGEAEELDQRREML 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1086.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1086.1.1 >prot_P-wetherbeei_contig1086.1.1 ID=prot_P-wetherbeei_contig1086.1.1|Name=mRNA_P-wetherbeei_contig1086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp MAETREKATLPVLTPDGGLSRYLQEIRQFPVLDPDEEYMLAKRWREHGDTback to top mRNA from alignment at P-wetherbeei_contig1086:3..701- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1086.1.1 ID=mRNA_P-wetherbeei_contig1086.1.1|Name=mRNA_P-wetherbeei_contig1086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig1086:3..701- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1086:3..701- >mRNA_P-wetherbeei_contig1086.1.1 ID=mRNA_P-wetherbeei_contig1086.1.1|Name=mRNA_P-wetherbeei_contig1086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig1086:3..701- (Phaeothamnion wetherbeei SAG_119_79)back to top |