mRNA_P-wetherbeei_contig10856.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10856.1.1
Unique NamemRNA_P-wetherbeei_contig10856.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: D7FQ68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ68_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.160e-53
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +VDIIHPG  NV K EL EM+AKK+++ DAT V LFGF+T +GGGKSTGFCLIYDSV+D KKFEPKHRL RAGLQ+KKETSRKQIKEAKNRQKKIRGTGRR+A+HKAKKA+K
Sbjct:   24 VVDIIHPGVANVSKTELGEMIAKKFRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 135
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: A0A7S2US90_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US90_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.200e-53
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            IVD+IHPGR NVPK+ELQE LAK +K+ D TTV LFGF+TA+GG KSTGFCLIYDSV+DAKKFEPK RL+R GL EK ETSRKQIKEAKNR KKIRGTGRR+ARHKAKKA+K
Sbjct:   25 IVDVIHPGRANVPKSELQERLAKMHKVNDTTTVSLFGFRTAFGGNKSTGFCLIYDSVEDAKKFEPKFRLVRLGLAEKTETSRKQIKEAKNRGKKIRGTGRRIARHKAKKANK 136
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: A0A0P5B3P7_9CRUS (40S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5B3P7_9CRUS)

HSP 1 Score: 165 bits (417), Expect = 2.020e-50
Identity = 84/113 (74.34%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQ-KKIRGTGRRVARHKAKKASK 339
            +V++IHPGRPNVPKAELQE +AK YK++DATTV L+GF+TA+GGGKS+GFCLIYDS++DAK+FEPKHRL+R GL +K ETSRKQIKEAKNR  K  RG GRR+ARHKA KA+K
Sbjct:   26 LVEVIHPGRPNVPKAELQEKVAKMYKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSINDAKRFEPKHRLVRQGLADKVETSRKQIKEAKNRALKNPRGVGRRIARHKANKANK 138
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: W4GRV1_9STRA (40S ribosomal protein S24 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=W4GRV1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.940e-50
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +VD++HPGRPNVPKAELQE LAK YK+ D  TV L+GF+TA+GGGKS+GF LIYD+V+DAKKFEPK+RL+R GL EK E SRKQIKE+KNR KK+RG GRR+ARHKA KA+K
Sbjct:   26 LVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: D0N827_PHYIT (40S ribosomal protein S24 n=14 Tax=Phytophthora TaxID=4783 RepID=D0N827_PHYIT)

HSP 1 Score: 162 bits (409), Expect = 3.230e-49
Identity = 81/112 (72.32%), Postives = 100/112 (89.29%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +V++IHPGRPNVPKAELQE ++K YK++DA TV L+GF+T +GGGKS+GF L+YD+V+DAK+FEPK+RLIR GL EK ETSRKQIKEAKNR KK+RG GRR+ARHKA KA+K
Sbjct:   26 VVEVIHPGRPNVPKAELQEKISKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: K3WZQ1_GLOUD (40S ribosomal protein S24 n=20 Tax=Oomycota TaxID=4762 RepID=K3WZQ1_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 6.510e-49
Identity = 80/112 (71.43%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +V++IHPGRPNVPKAELQE ++K YK++DA TV L+GF+TA+GGGKS+GF L+YD+V+DAK+FEPK+RL+R GL EK E SRKQIKEAKNR KK RG GRR+ARHKA KA+K
Sbjct:   26 VVEVIHPGRPNVPKAELQEKISKMYKVKDANTVFLYGFRTAFGGGKSSGFALVYDTVNDAKRFEPKYRLVRQGLAEKVEKSRKQIKEAKNRGKKTRGVGRRIARHKAAKANK 137
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: A0A3R6ZAQ3_9STRA (40S ribosomal protein S24 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZAQ3_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.350e-48
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +VD++HPGRPNVPKAELQE LAK YK+ D  TV L+GF+TA+GGGKS+GF LIYD+V+DAKKFEPK+RL+R GL EK E SRKQIKE+KNR KKIRG GRR+ARHKA KA+K
Sbjct:   24 LVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKIRGVGRRIARHKANKANK 135
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: W7U6J8_9STRA (40S ribosomal protein S24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6J8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.810e-48
Identity = 81/112 (72.32%), Postives = 97/112 (86.61%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            I+D++HPGR NVPK ELQE+++  +K     T  LFGF+TA+GGGKSTGF LIYD+++DAKKFEPKHRL+RAGL  KKETSRKQIKEAKNR KKIRGTGRR+A+HKAKKA+K
Sbjct:   26 IIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: F0YI50_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI50_AURAN)

HSP 1 Score: 158 bits (399), Expect = 1.080e-47
Identity = 78/112 (69.64%), Postives = 97/112 (86.61%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            ++D+IHP R NVPK+ELQ+M+AK +K+ D   + LFGF+  +GGGKSTGFCLIYDS + AKK+EPK+RLIR G+ EKKETSRKQIKEAKNR+KK+RGTGRR+A HKAKKA+K
Sbjct:   24 VLDVIHPDRANVPKSELQDMIAKSHKVADTQLISLFGFRNKFGGGKSTGFCLIYDSAEAAKKYEPKYRLIRNGIVEKKETSRKQIKEAKNRKKKVRGTGRRIANHKAKKAAK 135
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BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Match: A0A5D6XQD5_9STRA (40S ribosomal protein S24 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQD5_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.080e-47
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1 
Query:    4 IVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTGFCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTGRRVARHKAKKASK 339
            +V+++HP RPNVPKAELQE + K YK++DA TV L+GF+TA+GGGKS+GF L+YDSV+DAK+FEPK+RL+R GL EK E SRKQIKE+KNR KK RG GRR+ARHKA KASK
Sbjct:   26 VVEVLHPNRPNVPKAELQEKITKMYKVKDANTVFLYGFRTAFGGGKSSGFALVYDSVNDAKRFEPKYRLVRQGLAEKVEKSRKQIKESKNRGKKNRGVGRRIARHKAAKASK 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ68_ECTSI1.160e-5379.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US90_9STRA1.200e-5380.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0P5B3P7_9CRUS2.020e-5074.3440S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=... [more]
W4GRV1_9STRA3.940e-5073.2140S ribosomal protein S24 n=6 Tax=Saprolegniaceae ... [more]
D0N827_PHYIT3.230e-4972.3240S ribosomal protein S24 n=14 Tax=Phytophthora Ta... [more]
K3WZQ1_GLOUD6.510e-4971.4340S ribosomal protein S24 n=20 Tax=Oomycota TaxID=... [more]
A0A3R6ZAQ3_9STRA2.350e-4874.1140S ribosomal protein S24 n=2 Tax=Aphanomyces inva... [more]
W7U6J8_9STRA7.810e-4872.3240S ribosomal protein S24 n=2 Tax=Monodopsidaceae ... [more]
F0YI50_AURAN1.080e-4769.64Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6XQD5_9STRA1.080e-4770.5440S ribosomal protein S24 n=1 Tax=Pythium brassicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10856contigP-wetherbeei_contig10856:1799..2137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ68
Preferred nameRPS24
PFAMsRibosomal_S24e
Model size339
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC02878
KEGG koko:K01008,ko:K02974,ko:K17338
KEGG ReactionR03595
KEGG Pathwayko00450,ko01100,ko03010,map00450,map01100,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001889,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0031090,GO:0031099,GO:0031100,GO:0031369,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons1
Evalue1.91e-54
EggNOG OGsCOG2004@1|root,KOG3424@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S24e
Ec32 orthologEc-01_007240.1
EC2.7.9.3
Descriptionstructural constituent of ribosome
Cds size339
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.4984627-CDS-P-wetherbeei_contig10856:1798..21371683185887.4984627-CDS-P-wetherbeei_contig10856:1798..2137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10856 1799..2137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10856.1.1prot_P-wetherbeei_contig10856.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10856 1799..2137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10856.1.1

>prot_P-wetherbeei_contig10856.1.1 ID=prot_P-wetherbeei_contig10856.1.1|Name=mRNA_P-wetherbeei_contig10856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
QIVDIIHPGRPNVPKAELQEMLAKKYKLQDATTVMLFGFKTAYGGGKSTG
FCLIYDSVDDAKKFEPKHRLIRAGLQEKKETSRKQIKEAKNRQKKIRGTG
RRVARHKAKKASK
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mRNA from alignment at P-wetherbeei_contig10856:1799..2137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10856.1.1 ID=mRNA_P-wetherbeei_contig10856.1.1|Name=mRNA_P-wetherbeei_contig10856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10856:1799..2137- (Phaeothamnion wetherbeei SAG_119_79)
CAGATTGTGGACATCATTCACCCGGGGCGGCCGAATGTGCCAAAGGCCGA
GCTGCAGGAGATGTTGGCCAAGAAGTATAAGCTGCAGGACGCCACCACCG
TCATGCTCTTCGGCTTCAAGACGGCGTATGGCGGCGGCAAGTCGACGGGC
TTCTGCCTCATCTACGACTCGGTCGACGATGCGAAGAAGTTCGAGCCGAA
GCACCGGCTGATCCGGGCGGGGCTGCAGGAGAAGAAGGAGACGAGCCGCA
AGCAGATCAAAGAGGCCAAGAACCGGCAGAAGAAGATCCGCGGCACGGGC
CGCCGGGTCGCGCGCCACAAGGCGAAGAAGGCCTCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10856:1799..2137-

>mRNA_P-wetherbeei_contig10856.1.1 ID=mRNA_P-wetherbeei_contig10856.1.1|Name=mRNA_P-wetherbeei_contig10856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10856:1799..2137- (Phaeothamnion wetherbeei SAG_119_79)
CAGATTGTGGACATCATTCACCCGGGGCGGCCGAATGTGCCAAAGGCCGA
GCTGCAGGAGATGTTGGCCAAGAAGTATAAGCTGCAGGACGCCACCACCG
TCATGCTCTTCGGCTTCAAGACGGCGTATGGCGGCGGCAAGTCGACGGGC
TTCTGCCTCATCTACGACTCGGTCGACGATGCGAAGAAGTTCGAGCCGAA
GCACCGGCTGATCCGGGCGGGGCTGCAGGAGAAGAAGGAGACGAGCCGCA
AGCAGATCAAAGAGGCCAAGAACCGGCAGAAGAAGATCCGCGGCACGGGC
CGCCGGGTCGCGCGCCACAAGGCGAAGAAGGCCTCGAAG
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