mRNA_P-wetherbeei_contig10764.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10764.1.1
Unique NamemRNA_P-wetherbeei_contig10764.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: D7G2H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 6.120e-25
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDS-KTYFELVCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP  S Y++P+ ++ E QEFVAQ+LAS  T   L +W   F W++D+ S  TYFEL   LPACM  + LVA KTYARGLVFITVY EGS YVVMQ G
Sbjct:  129 VPVDSVYRQPVVILAEVQEFVAQELASSRTTQELTKWSGAFHWINDDSSCSTYFELQAELPACMDEIALVACKTYARGLVFITVYQEGSFYVVMQEG 225          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A8J2S959_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S959_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.560e-23
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP  S ++EPM  + EA EF A++LASDT    L +W D + W++++ + TYFE+ C  P CM  + L ASKTYARGLVFI VYF+ +LYVV+Q G
Sbjct:  176 VPSESSFKEPMAFVNEAAEFAARELASDTVHDELRKWTDVYGWMENDQANTYFEIQCCPPPCMDGIALAASKTYARGLVFIAVYFDRALYVVVQDG 271          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A7S3HBV8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.720e-21
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSL-PACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP +S Y EP++ + +A EF+AQ+L S++    L +    FPW+DD++S TYFEL  SL PA M ++ ++ASKTY RGL+ I++Y EG++Y +MQ G
Sbjct:   89 VPATSDYTEPLKFLEDASEFIAQELLSESVDKELRKMASVFPWIDDDNSSTYFELALSLVPAYMSKIKMIASKTYTRGLILISIYNEGTIYFIMQPG 185          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: F0Y4X5_AURAN (Rad51 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4X5_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 5.160e-21
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP  S ++EPM  + +A EF A +LAS      L +W D + W++ + + TYFEL C+ P CM  + L ASKTYARGLVFITVYFE + YVV+Q G
Sbjct:  102 VPSESSFKEPMGFVGDASEFAAAELASARVHEELRKWTDIYTWMETDAANTYFELQCAPPPCMDGIALAASKTYARGLVFITVYFEKAFYVVVQDG 197          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A7S4D7F3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F3_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 2.560e-18
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSL--PAC--MKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP +S +  P+++   A+EF+A +L SD  +A LE+W   F W+D +   TYFEL C    PAC  M  + +VASKTY RGLV ITV+ EG+ YVV+Q G
Sbjct:  156 VPAASEFHRPLQLHWAAEEFLANELVSDKVSAELEKWSKVFAWIDGDSESTYFELGCQAGHPACAAMADVAVVASKTYCRGLVLITVWHEGAFYVVVQPG 255          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A7S3HC66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC66_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.970e-17
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSL-PACMKRLTLVASKTYARGLVFI 243
            VP +S Y EP++ + +A EF+AQ+L S++    L +    FPW+DD++S TYFEL  SL PA M ++ ++ASKTY RGL+ I
Sbjct:   89 VPATSDYTEPLKFLEDASEFIAQELLSESVDKELRKMASVFPWIDDDNSSTYFELALSLVPAYMSKIKMIASKTYTRGLILI 170          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A482RZJ4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZJ4_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 5.100e-16
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFEL-VCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            +P SS +  P+R M  + +F+A +LAS+   A L++    FPWV+D+++ TYFEL +   P  M+ + LV SKTYARGLV +T+Y    +Y V+Q G
Sbjct:    1 MPLSSEFHAPLRFMEGSLDFLAGELASEEVQAELQKMASVFPWVEDDEAATYFELSLAGPPDSMRGVRLVCSKTYARGLVLVTIYHGQHVYCVVQNG 97          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A6U1P8Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P8Q3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.750e-15
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLP--ACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            VP  S + + +     A+ FVA QLASD T A L +W   + W++D+ + TYFEL  +LP  A ++ ++L+ASKTY+RGLV I +Y E S Y V+Q G
Sbjct:   82 VPPQSEFHQALHHHWGAETFVADQLASDETMAELAKWGKIYTWINDDAASTYFELESALPRGASLQDVSLIASKTYSRGLVLIGIYHENSFYFVLQAG 179          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A7S4K9I0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9I0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.120e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            +P SS +   +   +EAQ+F++ +L+       +E+W++   WVDDN+S TYFELV  +      +  + +K Y RGLV +TVYFEG  Y ++Q G
Sbjct:   12 IPASSGFTRQLESFQEAQDFLSSELSHPHIIDKIEEWKEYHEWVDDNNS-TYFELVGDVSGSFNDVQCICAKRYIRGLVLVTVYFEGVFYTILQDG 106          
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Match: A0A7S2D1T8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1T8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.560e-13
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 VPQSSPYQEPMRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLPACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG 288
            +P  S + +P+  + EA E+ A+ LASD     +     +  W++D+  KT+FE+   + A M+ + LVASKTY RGL+FIT+YFEGS Y+ +  G
Sbjct:  120 IPAQSSFHQPVSNVYEASEYCARTLASDGILDQMAALASEHRWIEDDAEKTFFEIQADI-AGMEGIELVASKTYTRGLIFITIYFEGSFYISISEG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10764.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G2H2_ECTSI6.120e-2558.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2S959_9STRA3.560e-2352.08Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3HBV8_9STRA2.720e-2147.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0Y4X5_AURAN5.160e-2151.04Rad51 domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S4D7F3_HETAK2.560e-1848.00Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3HC66_9STRA5.970e-1747.56Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RZJ4_9ARCH5.100e-1643.30Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A6U1P8Q3_9STRA1.750e-1544.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4K9I0_9STRA2.120e-1438.54Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2D1T8_9STRA2.560e-1340.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10764contigP-wetherbeei_contig10764:115..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2H2
Model size288
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.63e-23
EggNOG OGs2CNDG@1|root,2QVEC@2759|Eukaryota
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185883.3963132-CDS-P-wetherbeei_contig10764:114..2081683185883.3963132-CDS-P-wetherbeei_contig10764:114..208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10764 115..208 -
1683185883.4063237-CDS-P-wetherbeei_contig10764:467..6311683185883.4063237-CDS-P-wetherbeei_contig10764:467..631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10764 468..631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185883.415158-UTR-P-wetherbeei_contig10764:631..6611683185883.415158-UTR-P-wetherbeei_contig10764:631..661Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10764 632..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10764.1.1prot_P-wetherbeei_contig10764.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10764 115..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10764.1.1

>prot_P-wetherbeei_contig10764.1.1 ID=prot_P-wetherbeei_contig10764.1.1|Name=mRNA_P-wetherbeei_contig10764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MRVMREAQEFVAQQLASDTTAAALEQWRDKFPWVDDNDSKTYFELVCSLP
ACMKRLTLVASKTYARGLVFITVYFEGSLYVVMQVG
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mRNA from alignment at P-wetherbeei_contig10764:115..661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10764.1.1 ID=mRNA_P-wetherbeei_contig10764.1.1|Name=mRNA_P-wetherbeei_contig10764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=547bp|location=Sequence derived from alignment at P-wetherbeei_contig10764:115..661- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGCAGAGCTCGCCGTACCAGGAACCGATGCGAGTGATGCGCGAGGC GCAGGAGTTCGTGGCGCAGCAGCTGGCAAGCGACACCACAGCGGCGGCGC TGGAGCAGTGGCGGGACAAGTTCCCGTGGGTCGACGACAACGACAGCAAG ACGTACTTCGAGCTCGTCTGCAGCCTTCCCGCCTGCATGAAGCGGTAAGG CGAGAGAGGGGGAGAGGAAGCGGGGGAAGGGGGCAATGTGTTTTGTGAGG CACCACTTGTTTTGGGAAGCGGCATGCAGGACCGTTTGCCGCTAGCAATC GCTACCACTCACTTCCACTGCCGTAAAACAGCCCCGTGACCGCTGGAGCC GCTTCATCCTGCTGCTTCTGCCGCCTGTCTGCCTTCATAAATAAGGCGTT CGATTTTCGCTGTCACCATCGTTGCTACAGTTTCTCGGTTTGCTCTTCCT CAGACTGACGTTGGTGGCGAGCAAGACGTACGCCCGCGGCCTCGTCTTCA TCACCGTCTACTTTGAGGGCTCTTTGTACGTCGTCATGCAGGTAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10764:115..661-

>mRNA_P-wetherbeei_contig10764.1.1 ID=mRNA_P-wetherbeei_contig10764.1.1|Name=mRNA_P-wetherbeei_contig10764.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig10764:115..661- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGTGATGCGCGAGGCGCAGGAGTTCGTGGCGCAGCAGCTGGCAAG
CGACACCACAGCGGCGGCGCTGGAGCAGTGGCGGGACAAGTTCCCGTGGG
TCGACGACAACGACAGCAAGACGTACTTCGAGCTCGTCTGCAGCCTTCCC
GCCTGCATGAAGCGACTGACGTTGGTGGCGAGCAAGACGTACGCCCGCGG
CCTCGTCTTCATCACCGTCTACTTTGAGGGCTCTTTGTACGTCGTCATGC
AGGTAGGA
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