mRNA_P-wetherbeei_contig1072.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1072.4.1
Unique NamemRNA_P-wetherbeei_contig1072.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: W7TQX4_9STRA (Cln3like protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.510e-10
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  481 RDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPYCKLSCRHVLRSL---FLDALSL 693
            ++ AAF+++GL+NN  YVIM+A AK+I  GGVG VFLADV P+F+VKL+ PY      + LR+    FL A SL
Sbjct:   22 QNLAAFWALGLLNNVVYVIMLAGAKEINAGGVGLVFLADVAPTFLVKLSAPYWFHHVSYSLRASLCGFLMAASL 95
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: D7FPF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.870e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  478 LRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            LR+ AAF+ +GLINN+ YVIMMA AK+I    VG VF ADV P+ ++K+T PY
Sbjct:   60 LRNDAAFWLLGLINNSSYVIMMAVAKEIAPDAVGVVFFADVAPTMVIKVTAPY 112
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A7R9VN91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VN91_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.080e-10
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  463 QRRRALRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            +R R     AAF+ +GL+NNA YVIM+A+AK I  GG   VFLA+V+PS +VKLT PY
Sbjct:   25 RRSRDRPPLAAFWILGLLNNAAYVIMLASAKSISEGGTAMVFLANVMPSLMVKLTAPY 82
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A485K781_9STRA (Aste57867_2294 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K781_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.590e-10
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:  487 AAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            AAAF+ +GL+NN  YVIM+A AKDI  GGVG V++++VLPS +V+ TGPY
Sbjct:   10 AAAFWVLGLVNNIPYVIMIAGAKDINSGGVGLVYVSEVLPSLLVQFTGPY 59
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A6A4ZGK5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGK5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-9
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  490 AAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            AAF+ +GL+NN  YVIM+A AKDI  GGVG V++A+VLP+ +V+L+GPY
Sbjct:    6 AAFWLLGLVNNIPYVIMIAGAKDIAAGGVGLVYVAEVLPTLLVQLSGPY 54
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A6A3RF54_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RF54_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.640e-9
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  478 LRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            LR+  AF+ +G +NN GYVIM+A A++I  GGVG V+L D+ P+ +VKL+GPY
Sbjct:   14 LRNLVAFWVLGFVNNIGYVIMIAGAQEIAAGGVGLVYLFDIFPALLVKLSGPY 66
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A448Z0W3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0W3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.230e-9
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  463 QRRR--ALRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPYC--KLSCRHVLRSLFLDALSLFPS 702
            QRRR  A+R  A+F+ +GL+NNAGY IM+AAAK+I  GGV  VFLA++LP+  +K T PY   K+S     R LF    S+  S
Sbjct:   56 QRRRGIAVRLRASFWLMGLLNNAGYTIMIAAAKNISEGGVALVFLANILPALGIKATAPYWFEKVSYE---RRLFASTASMVAS 136
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: H3GX09_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GX09_PHYRM)

HSP 1 Score: 67.8 bits (164), Expect = 3.470e-9
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  478 LRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            LR+  AF+ +G +NN GYVIM+A A++I  GGVG V+L D+ P+ +VKL+GPY
Sbjct:   10 LRNLLAFWVLGFVNNIGYVIMIAGAQEIAAGGVGLVYLFDIFPALLVKLSGPY 62
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A6H5JLK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.210e-9
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  478 LRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            LR+ AAF+ +GLINN+ YVIMMA AK+I    VG VF ADV P+ ++K+T PY
Sbjct:   60 LRNDAAFWLLGLINNSSYVIMMAVAKEIAPDAVGVVFFADVAPTMVIKVTAPY 112
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BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Match: A0A1E7FPB7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPB7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-8
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  478 LRDAAAFFSIGLINNAGYVIMMAAAKDIEGGGVGYVFLADVLPSFIVKLTGPY 636
            +R + +F+ +GL+NN GYVIM+AAAK I  GGV  VFLA++LP+ +VK T PY
Sbjct:   94 IRFSISFWILGLLNNTGYVIMIAAAKSISEGGVALVFLANILPALVVKGTAPY 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1072.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TQX4_9STRA1.510e-1052.70Cln3like protein n=4 Tax=Monodopsidaceae TaxID=425... [more]
D7FPF3_ECTSI1.870e-1058.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9VN91_9STRA3.080e-1056.90Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A485K781_9STRA9.590e-1062.00Aste57867_2294 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A4ZGK5_9STRA1.700e-961.22Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A3RF54_9STRA2.640e-954.72Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A448Z0W3_9STRA3.230e-950.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
H3GX09_PHYRM3.470e-954.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5JLK7_9PHAE7.210e-958.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7FPB7_9STRA2.000e-856.60Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1072contigP-wetherbeei_contig1072:6586..7870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000021698
PFAMsCLN3
Model size855
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.37e-13
EggNOG OGsKOG3880@1|root,KOG3880@2759|Eukaryota,1MCIU@121069|Pythiales
DescriptionCLN3 protein
Cds size471
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185882.092071-UTR-P-wetherbeei_contig1072:6585..68431683185882.092071-UTR-P-wetherbeei_contig1072:6585..6843Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1072 6586..6843 +
1683185882.129347-UTR-P-wetherbeei_contig1072:7744..78701683185882.129347-UTR-P-wetherbeei_contig1072:7744..7870Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1072 7745..7870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185882.101982-CDS-P-wetherbeei_contig1072:6843..69911683185882.101982-CDS-P-wetherbeei_contig1072:6843..6991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1072 6844..6991 +
1683185882.1112251-CDS-P-wetherbeei_contig1072:7174..73001683185882.1112251-CDS-P-wetherbeei_contig1072:7174..7300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1072 7175..7300 +
1683185882.1201463-CDS-P-wetherbeei_contig1072:7547..77441683185882.1201463-CDS-P-wetherbeei_contig1072:7547..7744Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1072 7548..7744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1072.4.1prot_P-wetherbeei_contig1072.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1072 6844..7744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1072.4.1

>prot_P-wetherbeei_contig1072.4.1 ID=prot_P-wetherbeei_contig1072.4.1|Name=mRNA_P-wetherbeei_contig1072.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MTKGPQYASFEVTEESRTAATQIQSPPGPVAALSRVMDIGFKAEEYELLD
EEGGSGLQPPHRVGAWRRQRRRALRDAAAFFSIGLINNAGYVIMMAAAKD
IEGGGVGYVFLADVLPSFIVKLTGPYCKLSCRHVLRSLFLDALSLFPSSR
HQIVLH*
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mRNA from alignment at P-wetherbeei_contig1072:6586..7870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1072.4.1 ID=mRNA_P-wetherbeei_contig1072.4.1|Name=mRNA_P-wetherbeei_contig1072.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1285bp|location=Sequence derived from alignment at P-wetherbeei_contig1072:6586..7870+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAATTGGAAAAAGAGGAAAAGAAGAACTATCGTGTGGCAAAAAGTTC
TGGAATCTGCACAGCCGCTTCCCGCTTCCCTCCCACTGTGCCTATCGCCG
AGGTTTCTCGGTCGCAGCGCAGACCCTAGACGCCTCACTCTATAGTGTTG
GCTTTGCAGAAAAGGCCTTTTCGAAATTTTGTTTGTCACTCGCATTACTT
GCCACTCCGAAACACCATCGTCCGGGCACACGTTCGACATCAACCAACAC
CTCGTTTTATGACAAAGGGTCCGCAGTATGCATCATTCGAAGTGACGGAG
GAGAGCAGAACAGCGGCGACACAAATCCAGTCGCCGCCAGGTCCCGTCGC
CGCGCTCTCCCGCGTCATGGACATTGGCTTTAAGGCAGAAGAATATGAGC
TGCTCGGTGAGTGCTCCGCCTTGTGAAAGTTAATGGTTTTACTCCCTTTG
CCGACGCCTTTCTGGGTTTCCAAAACTCCGAACTGGGTTTTCAAAACTCC
GAACTACTCCGTATGCTGTTATCACCAAAAATGTTATTGTGCCTCCCGTC
TCATCTCTCTCTTTCCAACTTTGTGTGTTTAAGGAGAAGATGAGGAGGGC
GGGAGCGGGCTTCAGCCTCCGCATCGTGTCGGAGCGTGGCGGCGGCAGCG
GAGGAGAGCGCTGCGTGACGCGGCCGCCTTCTTTTCCATTGGCCTCATCA
ACAACGCGGGCTACGGTGAGTGCAGCAGAATATCAGTATTTCCCTTTACA
TAGTACTTTGCTGCTTGCGGTCATTGCCGCCGGTGTCGCTGCCGCCGATG
CCGACTTGCCGCGACAGTGCAATTCCTGCAGTCAACCCAGCGTCGCCGTA
ATTCTCATGCATTCCCCTCTGCCGCTTCGCTGCCCTCCCCTTCCTTGTCC
TTTCCTGACCATCGTCTGACTTCTACCCCCCGGGAACGCAAAATGCATTT
CGCATGCGGCAGTCATCATGATGGCGGCGGCAAAGGACATTGAGGGTGGC
GGCGTTGGTTACGTCTTTTTGGCCGATGTGTTGCCGTCCTTCATCGTCAA
GCTCACGGGACCCTATTGTAAGTTAAGCTGCCGTCACGTGTTGCGGTCCC
TTTTTCTGGACGCGCTGTCTCTGTTTCCTTCGAGCCGGCATCAGATTGTA
TTGCATTAGTGAACTAAAATTGAGAGCGTTGATGAGCTACCGGTATCGGC
GTCGGTTGACGATTTTGTTGCCTGAAAACAGCCAGTAGCATGAGAGGCTT
TCGACTTCAAGATCGAGACCAGAAAGCATGGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1072:6586..7870+

>mRNA_P-wetherbeei_contig1072.4.1 ID=mRNA_P-wetherbeei_contig1072.4.1|Name=mRNA_P-wetherbeei_contig1072.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig1072:6586..7870+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAAAGGGTCCGCAGTATGCATCATTCGAAGTGACGGAGGAGAGCAG
AACAGCGGCGACACAAATCCAGTCGCCGCCAGGTCCCGTCGCCGCGCTCT
CCCGCGTCATGGACATTGGCTTTAAGGCAGAAGAATATGAGCTGCTCGAT
GAGGAGGGCGGGAGCGGGCTTCAGCCTCCGCATCGTGTCGGAGCGTGGCG
GCGGCAGCGGAGGAGAGCGCTGCGTGACGCGGCCGCCTTCTTTTCCATTG
GCCTCATCAACAACGCGGGCTACGTCATCATGATGGCGGCGGCAAAGGAC
ATTGAGGGTGGCGGCGTTGGTTACGTCTTTTTGGCCGATGTGTTGCCGTC
CTTCATCGTCAAGCTCACGGGACCCTATTGTAAGTTAAGCTGCCGTCACG
TGTTGCGGTCCCTTTTTCTGGACGCGCTGTCTCTGTTTCCTTCGAGCCGG
CATCAGATTGTATTGCATTAG
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