mRNA_P-wetherbeei_contig1072.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1072.2.1
Unique NamemRNA_P-wetherbeei_contig1072.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A7S2PCQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCQ3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.390e-24
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 3
Query:  594 PAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGS--DAA-PVQ-EQQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            PAP Q   GGGM++G+A T+AQG AFGTGSA+AHRAVGAVA SFGGS  DA  P Q  QQ         A+AC  D+Q FY CLQ N GD SSC FLY++L++CQR++T
Sbjct:   26 PAPAQQSSGGGMMSGLASTVAQGMAFGTGSAIAHRAVGAVAGSFGGSGGDAEIPAQTSQQMGYEQQPTLASACADDKQMFYECLQMNKGDQSSCQFLYDALKTCQRSNT 134          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: D7FPJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.070e-23
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 3
Query:  615 GGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSDAAPVQE--QQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNSTHSY 917
            GGGGMLAGMA T+AQGFAFGTGS++AHRAVGAV    GG  +APV++  +Q          + CDVD+QNF  CLQ NN DV++C F++E+LQ+CQ  +  SY
Sbjct:   35 GGGGMLAGMASTMAQGFAFGTGSSIAHRAVGAVMG--GGGSSAPVEQAQEQAPQAYQQPPVDPCDVDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKKSY 135          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A6U3Y7Z6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Y7Z6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.850e-23
Identity = 72/146 (49.32%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  531 RSAPPAPRQAQPPAPQPA-------------AHPPAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGS-DAAPVQEQQXXXXXXXXX------ANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            ++APPA  + +P AP PA             A PPAPQQSGG   ML+G+  TIAQG AFGTGSA+AHRAVGAVA SF GS + AP ++QQ                 AC  D++ F++CL+ N GD  +C+FLY+ LQSCQRN T
Sbjct:   20 KAAPPAAPRRKPAAPAPARXXXXXQTPAPMXAQPPAPQQSGG---MLSGIGSTIAQGMAFGTGSAIAHRAVGAVAESFSGSGEGAPAEQQQQPEQQYAAAPQQSQLTGACANDKEMFFDCLKVNQGDQQACSFLYDQLQSCQRNET 162          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A7R9VMR5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VMR5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.250e-23
Identity = 68/121 (56.20%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  588 HPPAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGG----------SDAAPV----QEQQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            HPPA QQSGGGG M++G+  TIAQG AFGTGSA+AHRAVGAVA SFGG          + AAP     Q+QQ         A  CD D+Q F+ CLQ N GD  SC FLY++LQ+CQRN T
Sbjct:   37 HPPA-QQSGGGG-MMSGIGSTIAQGMAFGTGSAIAHRAVGAVAGSFGGGGEEAPQDSVAGAAPADAYGQQQQMQQM-----AGPCDQDKQMFFECLQMNKGDQESCRFLYDTLQTCQRNQT 150          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A7S1XNA6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNA6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.890e-22
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 3
Query:  600 PQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSD----AAPVQEQ---QXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRN 902
            PQQ  GG  M++G+ GT+AQGFAFGTGSAVAHRAVGAVANSF GS     AA +++Q   Q          NAC VDQQNF  CL  NNG+  +C F ++SLQ CQ+N
Sbjct:   52 PQQQSGG--MMSGLLGTVAQGFAFGTGSAVAHRAVGAVANSFSGSGEQAPAAGMEQQPQFQQQAPIQQVSQNACSVDQQNFMQCLTENNGNAQACQFFFDSLQQCQQN 157          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A4D9CYI4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYI4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.020e-22
Identity = 62/112 (55.36%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  591 PPAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSDAAPVQE---------QQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQR 899
            PPAP Q   GGGM++G A TIAQGFAFGTGSAVAHRAVGA A +F G   AP Q+         QQ            C +D QNF  CLQ N G+V +C FLYESLQ CQR
Sbjct:   34 PPAPHQPQQGGGMMSGFASTIAQGFAFGTGSAVAHRAVGAAAGAFSGDSEAPHQQEAYAQQPAHQQQYAAPAQGGQGPCALDGQNFQACLQANPGNVDACTFLYESLQQCQR 145          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A7S1D0K0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0K0_CYCTE)

HSP 1 Score: 102 bits (255), Expect = 9.230e-22
Identity = 75/132 (56.82%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  531 RSAPPAPRQAQPPAPQPAAHPPAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSDAAPVQEQQXXXXXXXXXAN------ACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            R A P P     PAP PAA PPAP Q   GGGML+G+  TIAQG AFGTGSA+AHRAVGA A +FG           XXXXXXXXX        AC  D+Q F+ CLQ N GD  +C+FLYE+LQ+CQRN T
Sbjct:   45 RRAAPRPASRSVPAPSPAARPPAPMQQQSGGGMLSGIGSTIAQGMAFGTGSAIAHRAVGAAAGAFGXXXXXXXXXXXXXXXXXXXXXQVQPLQGACAQDKQMFFECLQVNKGDQQACSFLYENLQACQRNDT 176          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A1Z5K887_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K887_FISSO)

HSP 1 Score: 100 bits (250), Expect = 1.600e-21
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  600 PQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSD-------AAPVQEQQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            P Q   GGGML+G+  TIAQG AFGTGSA+AHRAVGAVA SFGG           P+Q+QQ            C +D+Q F++CLQ+N GD  SC FLY+ LQ CQ+N T
Sbjct:   40 PMQPSSGGGMLSGIGSTIAQGMAFGTGSAIAHRAVGAVAGSFGGGSNEVAAAVEQPMQQQQ---------GGVCAMDKQMFFDCLQQNKGDQESCRFLYDQLQQCQQNQT 140          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: A0A7S1UZU7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZU7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.540e-21
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 3
Query:  567 PAPQPAAHPPAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGS----DAAPVQE---QQXXXXXXXXXANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNST 908
            PA +P A PPA  Q   GGG+L+G+  TIAQG AFGTGSA+AHRAVGAVA    G     +AAPV++              + AC  D+Q F+ CLQ N GD  SC+FLY+ LQ+CQRN T
Sbjct:    6 PAQKPKAAPPAVPQQSSGGGLLSGIGSTIAQGMAFGTGSAIAHRAVGAVAGGLSGGGEGGEAAPVEQYGDSLNPGSPTQQLSGACAGDKQMFFECLQVNKGDQQSCSFLYDQLQTCQRNET 126          
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Match: B7FUY2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUY2_PHATC)

HSP 1 Score: 99.8 bits (247), Expect = 7.280e-21
Identity = 62/107 (57.94%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  594 PAPQQSGGGGGMLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSDAAPVQEQQXXXXXXXXXAN------ACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQ 896
            PAPQ SGGGG ML+G+  TIAQG AFGTGSA+AHRAVGAVA SFGG +AA   E           AN      AC  D+  FY CLQ N GD  +C+FLYE LQ CQ
Sbjct:   51 PAPQSSGGGG-MLSGIGSTIAQGMAFGTGSAIAHRAVGAVAGSFGGGEAA-APEPNMAAGVDAAPANPSAIQGACAQDKTMFYECLQHNQGDQQACHFLYEQLQQCQ 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1072.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2PCQ3_9STRA1.390e-2459.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7FPJ0_ECTSI4.070e-2356.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U3Y7Z6_9STRA4.850e-2349.32Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9VMR5_9STRA9.250e-2356.20Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1XNA6_9STRA2.890e-2256.48Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CYI4_9STRA4.020e-2255.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1D0K0_CYCTE9.230e-2256.82Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5K887_FISSO1.600e-2152.73Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1UZU7_9STRA5.540e-2151.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7FUY2_PHATC7.280e-2157.94Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1072contigP-wetherbeei_contig1072:4821..6624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPJ0
PFAMsCHCH
Model size1609
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2e-24
EggNOG OGsKOG4090@1|root,KOG4090@2759|Eukaryota
Ec32 ortholog descriptionCysteine alpha-hairpin motif superfamily
Ec32 orthologEc-12_000770.1
Descriptionmitochondrion organization
Cds size297
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185882.2260613-UTR-P-wetherbeei_contig1072:4820..55061683185882.2260613-UTR-P-wetherbeei_contig1072:4820..5506Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1072 4821..5506 -
1683185882.2534015-UTR-P-wetherbeei_contig1072:5998..66241683185882.2534015-UTR-P-wetherbeei_contig1072:5998..6624Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1072 5999..6624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185882.2365751-CDS-P-wetherbeei_contig1072:5506..57321683185882.2365751-CDS-P-wetherbeei_contig1072:5506..5732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1072 5507..5732 -
1683185882.2449667-CDS-P-wetherbeei_contig1072:5927..59981683185882.2449667-CDS-P-wetherbeei_contig1072:5927..5998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1072 5928..5998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1072.2.1prot_P-wetherbeei_contig1072.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1072 5507..5998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1072.2.1

>prot_P-wetherbeei_contig1072.2.1 ID=prot_P-wetherbeei_contig1072.2.1|Name=mRNA_P-wetherbeei_contig1072.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MLAGMAGTIAQGFAFGTGSAVAHRAVGAVANSFGGSDAAPVQEQQAAAAP
AAAAANACDVDQQNFYNCLQRNNGDVSSCNFLYESLQSCQRNSTHSYA*
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mRNA from alignment at P-wetherbeei_contig1072:4821..6624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1072.2.1 ID=mRNA_P-wetherbeei_contig1072.2.1|Name=mRNA_P-wetherbeei_contig1072.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1804bp|location=Sequence derived from alignment at P-wetherbeei_contig1072:4821..6624- (Phaeothamnion wetherbeei SAG_119_79)
CACACGATAGTTCTTCTTTTCCTCTTTTTCCAATTTTTCCACGCGCAATA GAAAGAAGACATCCGATCAAGAAGACAAACATGGCACGGTGAGCCGCAGA GCACCACGTTGGAGAACTCATGTCTCTCCTTCCGACTCCAAGTCTCTCTT TCTACATTTCTACACTTTTCTCGAAAGAAGTCCTGACACCGTAAACACAC TCCTCTTGTCTCCACCGCCCTCCGTTTGCAGAGGAGGTGGACGTCGTTCA GCAGCGCCGGCGCCGGCACGGAGGCCCGCGGTTGCCGCGCCTACGCGGAG GTGAACATTCCCCCCTCGGCGATCTCCTTGAATCAGCGGAGAGTTGAAAC TCCCATTTTCCGCCACGAGCAAGCCGCATTCATCGGCCTTGCACGGCTGC GCCGCGTTGGTGGCCGCGGCGTCTCGCTTTCCCGAATGACTGATTTAAAA ACAGCACCAAGTTGTCTTTCCCTCACCAGCTCGTCCTATCCGATTCTTAT TTGTCCTTGTCGCCCAACCCGCTTGTACCCCGCAGCGCGCCACCTGCCCC CAGGCAGGCGCAGCCGCCGGCCCCGCAGCCGGCGGCGCACCCGCCTGCAC CCCAGCAAAGCGGTGGTGGCGGCGGCATGCTTGCCGGCATGGCGGGCACC ATCGCGCAAGGCTTCGCCTTCGGCACCGGCAGCGCCGTCGCCCACCGGTA AGTCGGCCCTTGCGTTTCTTTCTCTTGTTTTTTCCGTCTTTTGGTTGAGT CATTACCTCTTTCCCCATGAGATGACGTAGGTCCTTGTAACTAGCCTTGT TTTCATGTAGGAGACGCCGGTCCTCGTAACTTTGCCCGGTTCTTACGGTA AACTCCTGCGCCGTTCCTACCGTCCTTTCTTCTTCCCTGCAGCGCCGTGG GAGCTGTGGCGAACTCGTTCGGTGGCTCGGATGCGGCGCCGGTGCAGGAG CAGCAGGCGGCAGCTGCCCCGGCGGCAGCGGCGGCCAACGCCTGCGACGT CGACCAGCAGAACTTCTACAACTGCCTGCAGAGGAACAACGGCGACGTTT CGTCCTGCAACTTCCTCTATGAGTCGCTGCAGTCGTGCCAGCGGAACTCC ACGCACTCTTACGCGTAAAAGCAACGGCTGCGGCGGCCGAAGCTGCCCCG TTTCTCACGGCGAGGGAAACGCGTGTGGGAGGATCTCGGATTTTGACAGG GTGACTGCCGTATGTACGTGATCAAAAGAAGGGTGGAACAGACACGGACG GCGTGGCGGCGGCAGCGGCGCCAGCGCCGGGGCGGTGGAAGCGGAGACGG CGCCATGGCGGCAGCACTTTTTCTTTTTGGAAAGCGCACTCGGTCCATGG CTGCTGCCGCCCGCTGCTGCGGTCGCATCTGACTCATGACACATCTCGTT TCGCGCGCCGCATCGCGGCTTCGGCACGGCGAGGCGCTCCGTGCGCTCTC TCTGCATCCGCACTGCGGCGACTCGAACGGGGGGTGAAGTTGCGTCCCGC CCTGCAGATGGAAGGCTGCAAAACACATTGGGACGTAAAAAGAGGGGACG ATATCAAACCCTCCTTTCGGATTGCGCTGTATCGGACTCGTTTCTCCCTT GTCCTTTAAGTCACTGTCTTAAGAGTAAAGACGAAGAGATGAATTTCTTT CTTCCGTGGTACAGAATTGTGGACCAATAATCAGTTAGGTAGGAGGTAGG GCCAGTTGCGGGAACTGTTCCTAACAAGAAGGCGGGCATTCCCTTTTACT GATCATCCGAGAACAGAGGTACAAACGGCAGCCAGGGTTGTGTCTTATCG TGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1072:4821..6624-

>mRNA_P-wetherbeei_contig1072.2.1 ID=mRNA_P-wetherbeei_contig1072.2.1|Name=mRNA_P-wetherbeei_contig1072.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig1072:4821..6624- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGCCGGCATGGCGGGCACCATCGCGCAAGGCTTCGCCTTCGGCAC
CGGCAGCGCCGTCGCCCACCGCGCCGTGGGAGCTGTGGCGAACTCGTTCG
GTGGCTCGGATGCGGCGCCGGTGCAGGAGCAGCAGGCGGCAGCTGCCCCG
GCGGCAGCGGCGGCCAACGCCTGCGACGTCGACCAGCAGAACTTCTACAA
CTGCCTGCAGAGGAACAACGGCGACGTTTCGTCCTGCAACTTCCTCTATG
AGTCGCTGCAGTCGTGCCAGCGGAACTCCACGCACTCTTACGCGTAA
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