mRNA_P-wetherbeei_contig10697.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10697.2.1
Unique NamemRNA_P-wetherbeei_contig10697.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10697.2.1 vs. uniprot
Match: A0A5D6Y0D8_9STRA (Mitochondrial Rho GTPase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0D8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.080e-5
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   31 GFEKFHEIFLEDGQVAFPWQVLRHYGYDDKLLLSALPEHVAEPPLLRDGEAPELSAAAVSWLAALFRQFDADGDGTLTGADLGAVFAAAPDPAVAPWD 324
            GF+   ++F++  +    WQVLR  GY+++L L   PE +  PP   D  A +L+  A+ ++  LFRQFDA+ DG+L   ++  +F+   D    PW+
Sbjct:  290 GFQYLWQLFIDRHRPESCWQVLRSLGYNNELDLEIPPERIGLPPFEEDQSA-QLTPQAIGFVTNLFRQFDANKDGSLRVEEIEDIFSICEDEQP-PWE 385
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10697.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5D6Y0D8_9STRA5.080e-534.69Mitochondrial Rho GTPase n=1 Tax=Pythium brassicum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10697contigP-wetherbeei_contig10697:256..2293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr45953
PFAMsEF_assoc_2,Ras
Model size1807
Max annot lvl2836|Bacillariophyta
KEGG koko:K06883,ko:K07870
KEGG Pathwayko04137,ko04214,map04137,map04214
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.04e-15
EggNOG OGsCOG1100@1|root,KOG1707@2759|Eukaryota,2XAKK@2836|Bacillariophyta
DescriptionEF hand associated
Cds size1806
COG categoryV
BRITEko00000,ko00001,ko01000,ko03029,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185881.161126-CDS-P-wetherbeei_contig10697:255..3451683185881.161126-CDS-P-wetherbeei_contig10697:255..345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10697 256..345 +
1683185881.1732302-CDS-P-wetherbeei_contig10697:576..22921683185881.1732302-CDS-P-wetherbeei_contig10697:576..2292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10697 577..2292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10697.2.1prot_P-wetherbeei_contig10697.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10697 256..2292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10697.2.1

>prot_P-wetherbeei_contig10697.2.1 ID=prot_P-wetherbeei_contig10697.2.1|Name=mRNA_P-wetherbeei_contig10697.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=602bp
LVVDEAVTVAGFEKFHEIFLEDGQVAFPWQVLRHYGYDDKLLLSALPEHV
AEPPLLRDGEAPELSAAAVSWLAALFRQFDADGDGTLTGADLGAVFAAAP
DPAVAPWDPPRAEAFCGCDAQPAAAAFAAAPPPPPPPSSDGGGAIGGVDD
GDAGGVGSTGAKAEANGPGDATAGAAGRPAAAAPAATATAGPAAGLGLVE
WIARWQMVATLCPEVAQEALFHLGFYAHVDGAAAVVGSTLTRCKPRSYSS
RRQAGKRAGGGGGGAGAGRRHVVHTLVLGADGCGRTAACAAAVAAARAAA
GAPAADAAAEPPEPRSVHDTRTPHSFAAAVSRQSSAAVSFHAAASVGDED
DRGGGDACERYVVLTDVPEGSTDDALRTLVPQCDVVVLTFDGAKPASVDF
ALDMERALPKDVPRFFATVGEDSAAAAVPAATAAPGTAALAATAAAWRVA
QRCDEEGLRQPVVLCRGGSRGGLADAAAAAAGAMVASSERGAKESGSGGG
GGLGEGYLPRTDSQDRVVAAKNNGWVYAAAAAAVVGLLAFAAWHYSSGAS
ESCGRGAGGPVGSCTAGRDGAGTIPWARKLLPLERGAAAAVMVPSVLAAS
SL
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mRNA from alignment at P-wetherbeei_contig10697:256..2293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10697.2.1 ID=mRNA_P-wetherbeei_contig10697.2.1|Name=mRNA_P-wetherbeei_contig10697.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2038bp|location=Sequence derived from alignment at P-wetherbeei_contig10697:256..2293+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGGTTGACGAAGCGGTGACGGTGGCGGGCTTCGAAAAGTTCCACGA
GATCTTTCTGGAGGACGGCCAGGTGGCCTTTCCGTGGCAGGTGCGTAAAG
ACGTAGCCGGTTCTTGGGTGTGAAAGCGAAATGCGGGGACGACGGTGCTT
CGTTCCTTCGCGAATTGCTTGACGGAGCAAATCCTGCCTGTTGCATCGGG
TGACTCGCGCATGTATTCCATTTTCTCGAGTCAGTGGCGACTGCTTTCGA
AAAAAATGCCACCATGCCCCTCTATTGGGCTTGTGTCCCATGGTTCTTTA
CCTCATTACGTTTCTTCACAGGTGTTGCGGCACTATGGCTACGATGACAA
GCTGCTGCTGTCGGCGCTGCCGGAGCACGTCGCGGAGCCGCCGCTGCTGC
GCGACGGCGAGGCGCCCGAGCTGTCGGCAGCGGCCGTCTCGTGGCTCGCC
GCCCTCTTCCGGCAGTTTGACGCCGACGGCGACGGCACGCTGACGGGGGC
GGATCTCGGGGCGGTCTTCGCGGCCGCGCCGGACCCGGCGGTGGCGCCGT
GGGACCCGCCGCGCGCTGAGGCCTTCTGCGGCTGTGACGCACAGCCGGCC
GCCGCGGCCTTTGCCGCCGCGCCTCCGCCGCCGCCGCCACCGAGCTCCGA
CGGCGGCGGCGCCATTGGTGGGGTTGACGACGGCGACGCAGGCGGCGTCG
GTTCCACCGGCGCAAAGGCGGAGGCGAATGGGCCTGGTGACGCCACGGCT
GGGGCTGCGGGCCGGCCTGCGGCGGCGGCGCCTGCGGCGACGGCGACGGC
TGGGCCGGCGGCGGGGTTGGGCCTGGTCGAGTGGATTGCCCGCTGGCAGA
TGGTGGCGACGCTCTGCCCGGAGGTGGCACAGGAGGCGTTGTTCCACCTC
GGCTTTTACGCCCACGTCGATGGCGCGGCCGCCGTCGTCGGGAGCACGCT
GACGCGCTGCAAGCCGCGCTCGTACTCGTCGCGCCGGCAGGCGGGAAAAC
GCGCTGGCGGCGGCGGCGGCGGCGCCGGCGCCGGCCGACGGCACGTCGTC
CACACGCTCGTGCTCGGCGCCGACGGCTGCGGCAGGACGGCCGCCTGCGC
GGCTGCCGTGGCGGCTGCACGCGCGGCTGCTGGTGCCCCGGCTGCCGACG
CCGCCGCCGAGCCGCCCGAGCCACGCAGCGTCCACGACACGAGAACGCCC
CATAGCTTTGCGGCGGCTGTATCGCGGCAATCCTCGGCGGCGGTGTCATT
CCATGCCGCGGCGTCTGTCGGCGATGAAGACGATCGTGGTGGTGGCGACG
CGTGCGAGCGCTACGTCGTCCTGACGGACGTGCCGGAGGGCTCGACGGAT
GACGCGCTGCGGACGCTCGTGCCACAATGCGACGTCGTGGTGCTGACATT
CGACGGCGCAAAGCCCGCCTCTGTTGACTTTGCGCTCGATATGGAGAGAG
CGCTGCCGAAGGACGTTCCGCGCTTCTTTGCCACCGTTGGAGAGGATTCG
GCCGCCGCAGCGGTTCCTGCGGCAACGGCGGCGCCGGGAACGGCAGCACT
GGCGGCGACGGCGGCGGCGTGGCGTGTCGCTCAACGGTGCGACGAGGAGG
GCTTGCGGCAGCCCGTTGTCCTCTGTCGCGGCGGCAGCCGGGGTGGGCTG
GCCGACGCAGCGGCGGCTGCGGCGGGCGCAATGGTCGCGTCTTCGGAGAG
AGGCGCCAAGGAGAGTGGCAGCGGCGGCGGCGGCGGCCTTGGCGAGGGCT
ACTTGCCACGCACCGACAGCCAAGACCGCGTCGTCGCGGCCAAGAACAAC
GGCTGGGTGTACGCGGCGGCGGCTGCCGCCGTCGTGGGTCTCTTGGCGTT
TGCAGCGTGGCATTACAGCAGCGGGGCGAGCGAATCGTGCGGACGCGGCG
CTGGCGGCCCGGTCGGCAGCTGCACCGCCGGGAGGGACGGGGCGGGCACC
ATTCCATGGGCGCGCAAGCTTCTCCCCCTGGAAAGGGGTGCCGCGGCGGC
GGTTATGGTGCCGTCCGTGCTCGCGGCTTCCTCGCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10697:256..2293+

>mRNA_P-wetherbeei_contig10697.2.1 ID=mRNA_P-wetherbeei_contig10697.2.1|Name=mRNA_P-wetherbeei_contig10697.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1806bp|location=Sequence derived from alignment at P-wetherbeei_contig10697:256..2293+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGGTTGACGAAGCGGTGACGGTGGCGGGCTTCGAAAAGTTCCACGA
GATCTTTCTGGAGGACGGCCAGGTGGCCTTTCCGTGGCAGGTGTTGCGGC
ACTATGGCTACGATGACAAGCTGCTGCTGTCGGCGCTGCCGGAGCACGTC
GCGGAGCCGCCGCTGCTGCGCGACGGCGAGGCGCCCGAGCTGTCGGCAGC
GGCCGTCTCGTGGCTCGCCGCCCTCTTCCGGCAGTTTGACGCCGACGGCG
ACGGCACGCTGACGGGGGCGGATCTCGGGGCGGTCTTCGCGGCCGCGCCG
GACCCGGCGGTGGCGCCGTGGGACCCGCCGCGCGCTGAGGCCTTCTGCGG
CTGTGACGCACAGCCGGCCGCCGCGGCCTTTGCCGCCGCGCCTCCGCCGC
CGCCGCCACCGAGCTCCGACGGCGGCGGCGCCATTGGTGGGGTTGACGAC
GGCGACGCAGGCGGCGTCGGTTCCACCGGCGCAAAGGCGGAGGCGAATGG
GCCTGGTGACGCCACGGCTGGGGCTGCGGGCCGGCCTGCGGCGGCGGCGC
CTGCGGCGACGGCGACGGCTGGGCCGGCGGCGGGGTTGGGCCTGGTCGAG
TGGATTGCCCGCTGGCAGATGGTGGCGACGCTCTGCCCGGAGGTGGCACA
GGAGGCGTTGTTCCACCTCGGCTTTTACGCCCACGTCGATGGCGCGGCCG
CCGTCGTCGGGAGCACGCTGACGCGCTGCAAGCCGCGCTCGTACTCGTCG
CGCCGGCAGGCGGGAAAACGCGCTGGCGGCGGCGGCGGCGGCGCCGGCGC
CGGCCGACGGCACGTCGTCCACACGCTCGTGCTCGGCGCCGACGGCTGCG
GCAGGACGGCCGCCTGCGCGGCTGCCGTGGCGGCTGCACGCGCGGCTGCT
GGTGCCCCGGCTGCCGACGCCGCCGCCGAGCCGCCCGAGCCACGCAGCGT
CCACGACACGAGAACGCCCCATAGCTTTGCGGCGGCTGTATCGCGGCAAT
CCTCGGCGGCGGTGTCATTCCATGCCGCGGCGTCTGTCGGCGATGAAGAC
GATCGTGGTGGTGGCGACGCGTGCGAGCGCTACGTCGTCCTGACGGACGT
GCCGGAGGGCTCGACGGATGACGCGCTGCGGACGCTCGTGCCACAATGCG
ACGTCGTGGTGCTGACATTCGACGGCGCAAAGCCCGCCTCTGTTGACTTT
GCGCTCGATATGGAGAGAGCGCTGCCGAAGGACGTTCCGCGCTTCTTTGC
CACCGTTGGAGAGGATTCGGCCGCCGCAGCGGTTCCTGCGGCAACGGCGG
CGCCGGGAACGGCAGCACTGGCGGCGACGGCGGCGGCGTGGCGTGTCGCT
CAACGGTGCGACGAGGAGGGCTTGCGGCAGCCCGTTGTCCTCTGTCGCGG
CGGCAGCCGGGGTGGGCTGGCCGACGCAGCGGCGGCTGCGGCGGGCGCAA
TGGTCGCGTCTTCGGAGAGAGGCGCCAAGGAGAGTGGCAGCGGCGGCGGC
GGCGGCCTTGGCGAGGGCTACTTGCCACGCACCGACAGCCAAGACCGCGT
CGTCGCGGCCAAGAACAACGGCTGGGTGTACGCGGCGGCGGCTGCCGCCG
TCGTGGGTCTCTTGGCGTTTGCAGCGTGGCATTACAGCAGCGGGGCGAGC
GAATCGTGCGGACGCGGCGCTGGCGGCCCGGTCGGCAGCTGCACCGCCGG
GAGGGACGGGGCGGGCACCATTCCATGGGCGCGCAAGCTTCTCCCCCTGG
AAAGGGGTGCCGCGGCGGCGGTTATGGTGCCGTCCGTGCTCGCGGCTTCC
TCGCTT
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