mRNA_P-wetherbeei_contig10692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10692.1.1
Unique NamemRNA_P-wetherbeei_contig10692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10692.1.1 vs. uniprot
Match: A0A323TTY0_9GAMM (Alpha/beta hydrolase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A323TTY0_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 7.590e-10
Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:   34 LLVRSPPPETAERPTPVLFLAPEGLGAGCWEP-FLQHFSSRGVTVAACALGVLGGYGGGGRADKEGGGAGISDGAGLVDAVSALQGPPPVLVAVSMGAFVAQRYLESRAAAGICLINPFPP 393
            +L + PP   A R TP++F     +GA  W+  FL +F+  G    A +    GG  G  R D  G    ++D   L   +  L GPPP+LV  SMGA VAQRY+E    A   L+ P PP
Sbjct:   20 VLSQRPPAGVAARKTPIVFAHGAFMGAWSWQAHFLDYFARHGFHAVAPSFRGHGGSEGFERLDSAGINDYVND---LSTVIDGLDGPPPILVGHSMGALVAQRYMERAPVAAAVLMAPVPP 137
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BLAST of mRNA_P-wetherbeei_contig10692.1.1 vs. uniprot
Match: UPI001C84CE47 (alpha/beta hydrolase n=1 Tax=Mycobacterium sp. Y57 TaxID=2796469 RepID=UPI001C84CE47)

HSP 1 Score: 54.7 bits (130), Expect = 5.010e-6
Identity = 44/112 (39.29%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   61 TAERPTPVLFLAPEGLGAGCW-EPFLQHFSSRGVTVAACALGVLGGYGGGGRADKEGGGAGISDGAGLVDAVSALQGPPPVLVAVSMGAFVAQRYLESRAAAGICLINPFPP 393
            TA+ P P+LF+     GA CW E FL +F+ RG    AC    L G+G     ++      I D    V   +A     P+L+A SMG FVAQ+YLE  +AAG+ L+   PP
Sbjct:   11 TADHPAPLLFVHGAWHGAWCWDEHFLDYFAGRGY---ACFAPSLRGHGMSPGIERLRW-TRIRDYVDDVAETAARLPAQPILIAHSMGGFVAQKYLERHSAAGVVLLAAVPP 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A323TTY0_9GAMM7.590e-1038.02Alpha/beta hydrolase n=2 Tax=Gammaproteobacteria T... [more]
UPI001C84CE475.010e-639.29alpha/beta hydrolase n=1 Tax=Mycobacterium sp. Y57... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10692contigP-wetherbeei_contig10692:107..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1335757.SPICUR_04825
PFAMsAbhydrolase_6
Model size441
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.82e-12
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1PWD0@1224|Proteobacteria,1S8KS@1236|Gammaproteobacteria
DescriptionSerine aminopeptidase, S33
Cds size441
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185881.0675309-CDS-P-wetherbeei_contig10692:106..2941683185881.0675309-CDS-P-wetherbeei_contig10692:106..294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10692 107..294 -
1683185881.0758858-CDS-P-wetherbeei_contig10692:381..6341683185881.0758858-CDS-P-wetherbeei_contig10692:381..634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10692 382..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10692.1.1prot_P-wetherbeei_contig10692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10692 107..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10692.1.1

>prot_P-wetherbeei_contig10692.1.1 ID=prot_P-wetherbeei_contig10692.1.1|Name=mRNA_P-wetherbeei_contig10692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
AAAAAPATAAGLLVRSPPPETAERPTPVLFLAPEGLGAGCWEPFLQHFSS
RGVTVAACALGVLGGYGGGGRADKEGGGAGISDGAGLVDAVSALQGPPPV
LVAVSMGAFVAQRYLESRAAAGICLINPFPPPAAPAAATARLLATVP
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mRNA from alignment at P-wetherbeei_contig10692:107..634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10692.1.1 ID=mRNA_P-wetherbeei_contig10692.1.1|Name=mRNA_P-wetherbeei_contig10692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig10692:107..634- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGCGGCCCCGGCGACCGCCGCCGGCCTGCTGGTACGTTCGCC
ACCGCCGGAAACCGCCGAGCGGCCGACGCCGGTCCTATTTCTGGCACCTG
AGGGCCTTGGCGCCGGCTGCTGGGAACCGTTCCTGCAACACTTTTCTTCG
AGGGGAGTGACGGTCGCGGCGTGTGCCCTCGGCGTGCTTGGTGGGTACGG
CGGCGGCGGGCGTGCCGATAAGGAAGGCGGTGGAGCTGGAATCAGCGATG
GCGGTGGCCGCGATGGCGGCGGCGATGGCGGCGGCGATGGCGGCGGCGAT
GACAGCAGCGTTCTCGGCAGCGGGCTCGACGCCTTGGAAGCCGGGCTGGT
GGACGCCGTGTCCGCTCTGCAGGGCCCGCCGCCGGTGCTGGTGGCGGTGT
CGATGGGCGCGTTTGTGGCGCAGCGCTATCTCGAGTCGCGGGCGGCGGCC
GGCATCTGCCTCATTAACCCCTTTCCGCCGCCGGCGGCGCCCGCCGCCGC
CACCGCCCGGCTGCTGGCGACGGTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10692:107..634-

>mRNA_P-wetherbeei_contig10692.1.1 ID=mRNA_P-wetherbeei_contig10692.1.1|Name=mRNA_P-wetherbeei_contig10692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig10692:107..634- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGCGGCCCCGGCGACCGCCGCCGGCCTGCTGGTACGTTCGCC
ACCGCCGGAAACCGCCGAGCGGCCGACGCCGGTCCTATTTCTGGCACCTG
AGGGCCTTGGCGCCGGCTGCTGGGAACCGTTCCTGCAACACTTTTCTTCG
AGGGGAGTGACGGTCGCGGCGTGTGCCCTCGGCGTGCTTGGTGGGTACGG
CGGCGGCGGGCGTGCCGATAAGGAAGGCGGTGGAGCTGGAATCAGCGATG
GCGCCGGGCTGGTGGACGCCGTGTCCGCTCTGCAGGGCCCGCCGCCGGTG
CTGGTGGCGGTGTCGATGGGCGCGTTTGTGGCGCAGCGCTATCTCGAGTC
GCGGGCGGCGGCCGGCATCTGCCTCATTAACCCCTTTCCGCCGCCGGCGG
CGCCCGCCGCCGCCACCGCCCGGCTGCTGGCGACGGTGCCG
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