mRNA_P-wetherbeei_contig10683.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10683.1.1
Unique NamemRNA_P-wetherbeei_contig10683.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: A0A835Z1N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.160e-27
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    4 RDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGEDYLRRQHMHERR 210
            +DK ALEK RL  RAG+AAR+YRDNLPPEGVSLTE  PGAAGFIAD+DRFHTDV GE+ +RR   HERR
Sbjct:   10 KDKVALEKQRLFNRAGRAAREYRDNLPPEGVSLTEAHPGAAGFIADADRFHTDVVGEELVRRTAEHERR 78
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: D7FVW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.120e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 LRDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGEDYLRRQHMHERRVAATEQQR 234
            L+DK ALEK RL++RAGQAA+  RDNLPPEGVSLTE  P AAGFIAD+DRFH+D  GE++LRR+  HER+V   + +R
Sbjct:    9 LKDKVALEKGRLMQRAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERKVQINDNRR 86
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: A0A7S2XXX1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXX1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.420e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    4 RDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGEDYLRRQHMHERRVAATEQQR 234
            +DK ALEK+RL+ RAG  A+ YR+N P EGV L  L P AAGFI+D+DRFH+D +GE+ LRRQ    R+V   E++R
Sbjct:   40 KDKVALEKARLMNRAGHQAKIYRENAPVEGVGLLGLPPDAAGFISDADRFHSDTSGEELLRRQAEQARKVEFYEKRR 116
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: A0A7S4ECF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECF0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.810e-17
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 LRDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGED-----------YLRRQHMHERRVAATEQ 228
            LRDK ALEK RL++R G AA+ YR+N P     L    P AAGF+ADSDRFHTDVAGED           YLRR+H    R  A EQ
Sbjct:   47 LRDKVALEKDRLMKRTGLAAKMYRENAPDTSDGLVVPRPDAAGFMADSDRFHTDVAGEDKLRRDAKIKQDYLRREHTRLERAKAEEQ 133
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: A0A482RV70_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV70_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 1.330e-14
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 LRDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGEDYLRRQHMHERRVAATE 225
            ++DK ALE+SR+ +R G  AR ++ N P     LT    GAAG+++++DRFHTD  GE+Y  RQ    +R AA E
Sbjct:    1 MKDKVALERSRINQRTGWQARMHKANAPENSALLTSCTTGAAGYLSNADRFHTDTVGEEYALRQEQINKRKAADE 75
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BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Match: A0A8J2S6E6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6E6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-14
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    4 RDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDRFHTDVAGEDYLRRQHMHER 207
            RDK ALEK RL++R G AAR +R+N P     L      AAGF +D+DRFHTDVAGE++L+R+  +ER
Sbjct:   30 RDKVALEKDRLMKRTGLAARMHRENAPRTSDGLVVPEANAAGFCSDADRFHTDVAGEEFLKRRARYER 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10683.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z1N9_9STRA9.160e-2775.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVW2_ECTSI1.120e-2665.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XXX1_9STRA7.420e-1855.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4ECF0_9STRA3.810e-1754.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482RV70_9ARCH1.330e-1445.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2S6E6_9STRA2.930e-1454.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10683contigP-wetherbeei_contig10683:1498..1946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002360.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185880.6817641-CDS-P-wetherbeei_contig10683:1497..16361683185880.6817641-CDS-P-wetherbeei_contig10683:1497..1636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10683 1498..1636 +
1683185880.6912334-CDS-P-wetherbeei_contig10683:1851..19461683185880.6912334-CDS-P-wetherbeei_contig10683:1851..1946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10683 1852..1946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10683.1.1prot_P-wetherbeei_contig10683.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10683 1498..1946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10683.1.1

>prot_P-wetherbeei_contig10683.1.1 ID=prot_P-wetherbeei_contig10683.1.1|Name=mRNA_P-wetherbeei_contig10683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
LRDKAALEKSRLVERAGQAARQYRDNLPPEGVSLTELVPGAAGFIADSDR
FHTDVAGEDYLRRQHMHERRVAATEQQR
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mRNA from alignment at P-wetherbeei_contig10683:1498..1946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10683.1.1 ID=mRNA_P-wetherbeei_contig10683.1.1|Name=mRNA_P-wetherbeei_contig10683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=449bp|location=Sequence derived from alignment at P-wetherbeei_contig10683:1498..1946+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGAGACAAGGCGGCTCTGGAAAAGTCGCGTCTTGTCGAGCGCGCGGG
ACAGGCGGCGCGTCAGTATCGCGACAACTTGCCGCCGGAGGGCGTCTCGT
TGACCGAGCTCGTCCCCGGTGCCGCGGGCTTCATCGCCGGTGAGAGAAGA
AAGACCTTTCGGCGATCTTGCTCCCTCTGCCTGGAACTACTGATGCGAAT
CTTTCTCTTGCTCTATGGACTGTAATAATCTTGCTTTAAGTGTTTACGAA
AACGTTCAAAGAGACGCGTTTTTGATGCCACGTCCCGTTTGCTGTGACGC
CTCCTCTGCCCCCCTGCAAACGGCTGCCACGGGCCGCCGCCCGCCGAAGC
ACAGACTCGGACCGGTTCCACACGGACGTGGCGGGAGAGGACTACCTGCG
CCGGCAGCACATGCATGAGCGGCGGGTGGCGGCGACGGAGCAGCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10683:1498..1946+

>mRNA_P-wetherbeei_contig10683.1.1 ID=mRNA_P-wetherbeei_contig10683.1.1|Name=mRNA_P-wetherbeei_contig10683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig10683:1498..1946+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGAGACAAGGCGGCTCTGGAAAAGTCGCGTCTTGTCGAGCGCGCGGG
ACAGGCGGCGCGTCAGTATCGCGACAACTTGCCGCCGGAGGGCGTCTCGT
TGACCGAGCTCGTCCCCGGTGCCGCGGGCTTCATCGCCGACTCGGACCGG
TTCCACACGGACGTGGCGGGAGAGGACTACCTGCGCCGGCAGCACATGCA
TGAGCGGCGGGTGGCGGCGACGGAGCAGCAGCGG
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