mRNA_P-wetherbeei_contig10673.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10673.4.1
Unique NamemRNA_P-wetherbeei_contig10673.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10673.4.1 vs. uniprot
Match: A0A0D2MIV8_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MIV8_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 6.260e-5
Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 2 
Query:  140 SRVCDAPDCGKRPSFGFPGDRARV-CSAHRAEGMQDV 247
            S+ C AP+CGK PSF FPG R R  C  H A GM DV
Sbjct:   83 SQACKAPNCGKAPSFNFPGTRERAFCKTHAAPGMVDV 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10673.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2MIV8_9CHLO6.260e-559.46Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10673contigP-wetherbeei_contig10673:1229..2041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185880.074045-CDS-P-wetherbeei_contig10673:1228..14891683185880.074045-CDS-P-wetherbeei_contig10673:1228..1489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10673 1229..1489 +
1683185880.0828707-CDS-P-wetherbeei_contig10673:2006..20391683185880.0828707-CDS-P-wetherbeei_contig10673:2006..2039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10673 2007..2039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10673.4.1prot_P-wetherbeei_contig10673.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10673 1229..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10673.4.1

>prot_P-wetherbeei_contig10673.4.1 ID=prot_P-wetherbeei_contig10673.4.1|Name=mRNA_P-wetherbeei_contig10673.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
AAGRRRRGHAGATGRAARHATAACAGGPDRGAQDGRHSMAIWPRLRQPRV
RRARLRQTAELRLPRRSRARLLGPPRRGYAGCRPQGAVRVSGLPEAPI
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mRNA from alignment at P-wetherbeei_contig10673:1229..2041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10673.4.1 ID=mRNA_P-wetherbeei_contig10673.4.1|Name=mRNA_P-wetherbeei_contig10673.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig10673:1229..2041+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGGCGGCGCCGGCGGGGTCATGCCGGCGCCACCGGGCGGGCCGC
CAGACATGCCACCGCCGCGTGCGCTGGTGGACCCGATCGTGGTGCCCAAG
ACGGGCGGCACAGCATGGCGATATGGCCCCGGCTGCGCCAGCCGCGTGTG
CGACGCGCCCGACTGCGGCAAACGGCCGAGCTTCGGCTTCCCCGGCGATC
GCGCGCGCGTTTGCTCGGCCCACCGCGCCGAGGGTATGCAGGATGTCGCC
CACAAGGAGCGGTGAGTCATCTCAGTAAAAAGATTTCGTGTCATTTTTTA
TTTGTTTCTTTCAGTGTTTTTGCTCGGCTTTTTGAGTGGGAAAAGAGAAC
CTCTGTTGTCGGCCTTTCTGAGGAAGGTTATTTCTATTATGTTACTATAT
GTCTTTCGTTTGTTTTTCACTTCCTGCGCTTCGGTCGTGAGGCATTGCCT
GTGATGCTTCCTCTCTTTCTTCGCGACGTTGACGATGTGAAGCGGTTTCA
TGGTCTTGTTGCGAAGACTCTCCATGTTAAAAATATCCGCTCCCTTATCA
TGGATGACCTCGGCCGTCCTTTGAGAAGGTGCCATACGATCTCGCGTCTT
TGACTCTTTCCATCTGACGCGCCCATGAACCGTCCCGCTGGCTGCTAGTG
TACTTACTCTCCTCCGCTCTGCGCCACGCTCTTATAGCATGGTCGATCCT
GACCCTCTTGCCGTTGCTGCTTTTGGCGTCCTTCCTCTCAATGCTGCTCT
CCGTGTGTTATGCGGCGTCCTCTCACAGGTGCGAGTTTCCGGACTGCCTG
AAGCACCCATCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10673:1229..2041+

>mRNA_P-wetherbeei_contig10673.4.1 ID=mRNA_P-wetherbeei_contig10673.4.1|Name=mRNA_P-wetherbeei_contig10673.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig10673:1229..2041+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGGCGGCGCCGGCGGGGTCATGCCGGCGCCACCGGGCGGGCCGC
CAGACATGCCACCGCCGCGTGCGCTGGTGGACCCGATCGTGGTGCCCAAG
ACGGGCGGCACAGCATGGCGATATGGCCCCGGCTGCGCCAGCCGCGTGTG
CGACGCGCCCGACTGCGGCAAACGGCCGAGCTTCGGCTTCCCCGGCGATC
GCGCGCGCGTTTGCTCGGCCCACCGCGCCGAGGGTATGCAGGATGTCGCC
CACAAGGAGCGGTGCGAGTTTCCGGACTGCCTGAAGCACCCATC
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