mRNA_P-wetherbeei_contig10673.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10673.2.1
Unique NamemRNA_P-wetherbeei_contig10673.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10673.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10673contigP-wetherbeei_contig10673:63..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185880.1099443-UTR-P-wetherbeei_contig10673:62..2301683185880.1099443-UTR-P-wetherbeei_contig10673:62..230Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10673 63..230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185880.1202707-CDS-P-wetherbeei_contig10673:230..7251683185880.1202707-CDS-P-wetherbeei_contig10673:230..725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10673 231..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10673.2.1prot_P-wetherbeei_contig10673.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10673 231..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10673.2.1

>prot_P-wetherbeei_contig10673.2.1 ID=prot_P-wetherbeei_contig10673.2.1|Name=mRNA_P-wetherbeei_contig10673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MATRRRKMTQDETKEEANSPTATKEATSIKPPQVRNIAAVGSFGWWRMFA
PRKTSLNKMDSFANENGRLRIEERHASDVLFAPSVQMAEPVPTVGGVAVG
DPRGPLLAYFMTFLEGHNVDPRQITSCVATSIVSRHMPLPTPGTTADLIA
CFLTELDSGRIAFAP
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mRNA from alignment at P-wetherbeei_contig10673:63..725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10673.2.1 ID=mRNA_P-wetherbeei_contig10673.2.1|Name=mRNA_P-wetherbeei_contig10673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig10673:63..725+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGTGAAAGCCAGTTGAGCCGTGAGATCCATTCATTCGGAGGAGACTC
GCGATTCAGCTTTTGAAAAAGCTGTCGTGCAGGGAACGCAGCTCGAGACT
TTCAGCTGCGCTCACAACAGCCTCGAAGCATTGCGCAGAGGCACCTACAA
CGTCCGATCCCTGGTGATATGGCAACAAGGCGTCGCAAGATGACCCAGGA
CGAGACCAAAGAAGAGGCTAACTCTCCCACGGCGACGAAGGAGGCGACGT
CCATCAAGCCACCGCAGGTGAGAAATATTGCCGCCGTTGGCTCGTTCGGG
TGGTGGCGGATGTTTGCGCCCCGCAAAACCAGTTTGAACAAGATGGATTC
CTTCGCGAACGAGAATGGGCGCCTTCGTATAGAAGAACGCCACGCTTCCG
ACGTCCTTTTTGCTCCCTCCGTGCAGATGGCGGAGCCCGTGCCGACCGTG
GGAGGCGTCGCTGTCGGCGACCCTCGCGGGCCCCTTCTCGCCTACTTCAT
GACCTTTCTCGAGGGCCACAACGTCGACCCGCGCCAGATCACCAGTTGCG
TCGCCACGAGCATCGTCTCGCGCCACATGCCGCTGCCGACGCCCGGCACC
ACCGCCGACCTCATCGCATGCTTCCTCACGGAGCTCGACTCGGGCCGCAT
CGCCTTTGCACCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10673:63..725+

>mRNA_P-wetherbeei_contig10673.2.1 ID=mRNA_P-wetherbeei_contig10673.2.1|Name=mRNA_P-wetherbeei_contig10673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig10673:63..725+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACAAGGCGTCGCAAGATGACCCAGGACGAGACCAAAGAAGAGGC
TAACTCTCCCACGGCGACGAAGGAGGCGACGTCCATCAAGCCACCGCAGG
TGAGAAATATTGCCGCCGTTGGCTCGTTCGGGTGGTGGCGGATGTTTGCG
CCCCGCAAAACCAGTTTGAACAAGATGGATTCCTTCGCGAACGAGAATGG
GCGCCTTCGTATAGAAGAACGCCACGCTTCCGACGTCCTTTTTGCTCCCT
CCGTGCAGATGGCGGAGCCCGTGCCGACCGTGGGAGGCGTCGCTGTCGGC
GACCCTCGCGGGCCCCTTCTCGCCTACTTCATGACCTTTCTCGAGGGCCA
CAACGTCGACCCGCGCCAGATCACCAGTTGCGTCGCCACGAGCATCGTCT
CGCGCCACATGCCGCTGCCGACGCCCGGCACCACCGCCGACCTCATCGCA
TGCTTCCTCACGGAGCTCGACTCGGGCCGCATCGCCTTTGCACCA
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