mRNA_P-wetherbeei_contig10670.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10670.1.1
Unique NamemRNA_P-wetherbeei_contig10670.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A836CBL7_9STRA (Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.300e-34
Identity = 69/127 (54.33%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLER 381
            VS LRP+ P +Q   AS+ AVA AMA  + DACL+V E G + GI++DND+TRRV+  G+D   + A  VMT  P CV++ED A+EALG M  + FRHLPV D  G + GVLD+AKCLY+ + RLER
Sbjct: 1493 VSRLRPRPPTIQRSDASIAAVAAAMAGAKVDACLLVGEDGSLHGIITDNDLTRRVIAKGIDVGDSVAS-VMTQSPRCVAMEDSAMEALGVMIERHFRHLPVTDASGAVTGVLDIAKCLYDAITRLER 1618          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A7S1VMX7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMX7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.880e-33
Identity = 65/128 (50.78%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLERA 384
            V+ LRPKKPV    + SV ++++ +A+ R DA LIV   GR+ GIM+D D+ RRVV   +   +T  +D MTP P CV ++D A+EALG M  KRFRHLPVVD  G +VG+LD+A+CL+ T+++LER+
Sbjct: 1834 VAKLRPKKPVQAACEDSVLSLSQMLAKRRGDAALIVSATGRLSGIMTDKDVCRRVVAKRMMPVSTLVQDAMTPNPTCVRLQDSAMEALGIMIEKRFRHLPVVDEHGSVVGLLDIARCLHQTIDKLERS 1961          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: B8C5T2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5T2_THAPS)

HSP 1 Score: 126 bits (317), Expect = 3.790e-33
Identity = 65/128 (50.78%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLERA 384
            VS LRPK P+V     SV +V + +A  R DA +I D+ G + GI++D D+TRRVV   L  + TP  DVMT  P CVS+ D A EAL TM   RFRHLPV D  G +VGVLD+AKCL + + +LE +
Sbjct:    3 VSKLRPKAPIVSSSTDSVLSVTQMLASKRGDAAIITDQSGGMAGIITDTDVTRRVVAKHLSPSATPISDVMTANPTCVSMTDSATEALVTMVENRFRHLPVTDDNGAVVGVLDIAKCLNDAISKLEHS 130          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 7.330e-33
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLER 381
            VS L+PK P+  P   SV  VAK MA+ RTDA +++D  G + GI+SD D+ RRVV   LD ++T   +VMTP P  V + D A+E LG M  KRFRHLPV+DG G + G+L +AKCLY+ ++RL++
Sbjct: 1877 VSMLKPKPPLCLPSTVSVLEVAKKMADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKK 2003          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A7S0GJB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJB2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.280e-32
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLERA 384
            VS LRPKKP +  +  S+  V + ++  R+DA LI+   G + GIM+D DITRRVV   LDA++   E VMTP P CV++ D A+ AL  M    FRHLPV++ +G IVG+LD+AKCL + + +LER+
Sbjct:   11 VSKLRPKKPNIASVDDSILKVTQMLSSKRSDAALIMGRDGGLAGIMTDVDITRRVVAQRLDASSAIVEMVMTPNPTCVTMSDSAMSALSIMVDNHFRHLPVLNDLGAIVGLLDIAKCLNDAISKLERS 138          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A1E7EUQ0_9STRA (CBS-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUQ0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.560e-32
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLER 381
            VS+LRPKKP++  +  SV +V + +A  R  A LIV++ G + GI++D DITRR++   LDAA+T    VMTP P CVS+ D A++A+ TM    FRHLPVVD  G +VG+LD+AKCL + + +LE+
Sbjct:    5 VSSLRPKKPLISSVGDSVLSVTQMLASKRGSASLIVNDEGGLAGIITDTDITRRLIAKHLDAASTSVSKVMTPNPTCVSMLDSAMDAMTTMVENHFRHLPVVDDKGGVVGLLDIAKCLNDAISKLEK 131          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A7S2M3N3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M3N3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.160e-32
Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLERA 384
            VS LRPKKP++Q    +V AV + +A  R DA +I D  G + GI++D D+TRRVV   L A++T   DVMT  P CVS+ D A +A+ TM   RFRHLPV D  G IVGVLD+AKCL + + +LE++
Sbjct:  152 VSKLRPKKPILQNESETVLAVTQMLASKRGDAAIITDNSGGLAGIITDTDVTRRVVAKQLPASSTRVSDVMTANPSCVSMSDPATDAMVTMVENRFRHLPVTDDSGAIVGVLDIAKCLNDAISKLEKS 279          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A7R9VL18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL18_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.140e-31
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLERA 384
            VS LRPKKP++     SV +V + +A  R DA L+V   G + GI++D DITRRVV   +D ++T    VMT  P CVS+ D A++AL TM    FRHLPVVD  G +VG+LD+AKCL + + +LERA
Sbjct:   31 VSKLRPKKPMISSADDSVLSVTQMLANKRGDAALLVGPDGGLAGIVTDTDITRRVVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLERA 158          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: A0A1W0A5N3_9STRA (Myosin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5N3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.040e-31
Identity = 69/129 (53.49%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGV-GQIVGVLDLAKCLYNTMERLERA 384
            V+ LRP K V      SV+  A  M  NRT A L+V+  G + GI+SD DITRRVVG GLDAAT     VMTP P CV+  D A +AL TM   RFRHLPV+DG  G +VG+L++AKCL++ + RLE A
Sbjct: 1265 VARLRPAKAVTVDSMISVKEAAGVMKTNRTAAVLVVNTKGGLEGILSDTDITRRVVGKGLDAATIKVSSVMTPNPSCVTSTDKATQALNTMLQGRFRHLPVIDGTSGAVVGLLNVAKCLHDAIRRLEHA 1393          
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Match: F0Y914_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y914_AURAN)

HSP 1 Score: 121 bits (303), Expect = 4.290e-31
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDNDITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLPVVDGVGQIVGVLDLAKCLYNTMERLER 381
            V  LRP+ PVV     ++  V KAMA  RTD  L+   +G + GI++DND+ R+ V  GLD A TP E +MT  P CV   D A++AL +M +  FRHLPV+   G IVGVL++ +CLY  +E++E+
Sbjct:   31 VEKLRPEAPVVLEASTAISDVCKAMAAKRTDCALLTSAVGTLAGIVTDNDVARKAVAEGLDLAATPVERIMTRGPTCVRAGDGAIDALRSMVSNHFRHLPVLGDTGAIVGVLNIHRCLYEAIEKIEK 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10670.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBL7_9STRA1.300e-3454.33Myosin 29 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S1VMX7_9STRA2.880e-3350.78Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B8C5T2_THAPS3.790e-3350.78Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
D7G6N9_ECTSI7.330e-3350.39Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S0GJB2_9STRA3.280e-3248.44Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A1E7EUQ0_9STRA4.560e-3249.61CBS-domain-containing protein (Fragment) n=1 Tax=F... [more]
A0A7S2M3N3_9STRA8.160e-3250.78Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7R9VL18_9STRA1.140e-3150.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1W0A5N3_9STRA3.040e-3153.49Myosin n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]
F0Y914_AURAN4.290e-3145.67Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10670contigP-wetherbeei_contig10670:61..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size384
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-33
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size384
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185879.9798002-CDS-P-wetherbeei_contig10670:60..4441683185879.9798002-CDS-P-wetherbeei_contig10670:60..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10670 61..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10670.1.1prot_P-wetherbeei_contig10670.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10670 61..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10670.1.1

>prot_P-wetherbeei_contig10670.1.1 ID=prot_P-wetherbeei_contig10670.1.1|Name=mRNA_P-wetherbeei_contig10670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
VSALRPKKPVVQPLQASVQAVAKAMAENRTDACLIVDELGRVVGIMSDND
ITRRVVGAGLDAATTPAEDVMTPKPLCVSVEDDALEALGTMCTKRFRHLP
VVDGVGQIVGVLDLAKCLYNTMERLERA
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mRNA from alignment at P-wetherbeei_contig10670:61..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10670.1.1 ID=mRNA_P-wetherbeei_contig10670.1.1|Name=mRNA_P-wetherbeei_contig10670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig10670:61..444- (Phaeothamnion wetherbeei SAG_119_79)
GTGTCCGCGCTGCGGCCGAAGAAGCCCGTCGTGCAGCCCCTGCAGGCATC GGTGCAGGCCGTGGCGAAGGCGATGGCCGAGAACCGGACGGATGCATGCC TCATCGTCGACGAACTCGGCAGGGTCGTCGGAATCATGTCGGACAACGAC ATCACCCGGCGGGTGGTCGGCGCCGGGCTGGACGCGGCGACGACGCCGGC GGAGGACGTCATGACGCCGAAGCCGCTCTGCGTCTCCGTCGAGGACGATG CACTGGAAGCCTTGGGCACCATGTGCACGAAGCGTTTCAGGCACCTGCCT GTGGTGGACGGCGTGGGGCAGATCGTTGGGGTGCTCGATCTAGCCAAGTG CCTCTACAACACGATGGAGCGGCTCGAGCGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10670:61..444-

>mRNA_P-wetherbeei_contig10670.1.1 ID=mRNA_P-wetherbeei_contig10670.1.1|Name=mRNA_P-wetherbeei_contig10670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig10670:61..444- (Phaeothamnion wetherbeei SAG_119_79)
GTGTCCGCGCTGCGGCCGAAGAAGCCCGTCGTGCAGCCCCTGCAGGCATC
GGTGCAGGCCGTGGCGAAGGCGATGGCCGAGAACCGGACGGATGCATGCC
TCATCGTCGACGAACTCGGCAGGGTCGTCGGAATCATGTCGGACAACGAC
ATCACCCGGCGGGTGGTCGGCGCCGGGCTGGACGCGGCGACGACGCCGGC
GGAGGACGTCATGACGCCGAAGCCGCTCTGCGTCTCCGTCGAGGACGATG
CACTGGAAGCCTTGGGCACCATGTGCACGAAGCGTTTCAGGCACCTGCCT
GTGGTGGACGGCGTGGGGCAGATCGTTGGGGTGCTCGATCTAGCCAAGTG
CCTCTACAACACGATGGAGCGGCTCGAGCGGGCG
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