mRNA_P-wetherbeei_contig10637.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10637.1.1
Unique NamemRNA_P-wetherbeei_contig10637.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: D7G1D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D6_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.410e-10
Identity = 101/333 (30.33%), Postives = 125/333 (37.54%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPECA--APIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADLLGLGPPTAGGASAGVGAPAXXXXXXXXXXXXXATPGAAGEEKASAGGARDXXXXXRXXXKVAALKGASVKAPEXXXXXXXXXXEPSARSKRARDGXXXXXXXXXXXXXXXXXXXXXXXXXARPKRVTFLVNVWVNHRPESAVPMAEAAAAALSQGRVALDCLSRVAVTVIPXXXXXXXXXXXXXXXXPDG--------SVAEAXXXXXXXXXXXXXXXXXXXXXAVAV----------AASCVRSWNFGEVGTEARRQVHEAHVVSMPM 939
            T +Y S  G PT++LE  G   C     +  +A++AW+S P+LGKHICFDGR+LHAAP DLA    L P T G                              +E    GG   XX       KV  L G+SV                        DG  XXXXXXXXX                 +RVTFLVNVW+NH P +A P+    AA L    +AL   S   V  IP                 DG        SVA                       +VA           AA+    W FGEVG EA + +    +V +P+
Sbjct:  168 TVTYLSTNGGPTVVLEKKGPMACEDMEEVSGEAAKAWVSRPALGKHICFDGRYLHAAPADLA----LPPQTTGL-----------------------------DETPPLGGXXXXXRDKDGESKVV-LPGSSV------------------------DGKGXXXXXXXXX-----------------RRVTFLVNVWLNHTPRNAAPLPAPTAAELGPSNLALRLSSSDFVPPIPLLVDETAAPTGSGD---DGAMPGQGRRSVATKQRRFGPAKPEPERQEASVATGSVAAREGEKTAAAAAAAVDMKWEFGEVGDEAEKHLRHEVLVPVPI 422
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A6H5JMS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.300e-10
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPEC--AAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADLLGLGPPT 207
            T +Y S  G PT++LE  G   C     +  +A++AW+S P+LGKHICFDGR+LHAAP DLA    L PPT
Sbjct:  168 TVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPADLA----LPPPT 234
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A813KGZ6_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KGZ6_POLGL)

HSP 1 Score: 65.5 bits (158), Expect = 3.190e-8
Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPE-----CAAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADLLG 192
            T +Y S  GAPTI+LE    PE        P+  +  R  LS P +GKHI FDGRWLHAAP DLA L+G
Sbjct:  172 TVTYLSEGGAPTIVLEAVEPPEGDGGGATRPLAVE--RGHLSWPQVGKHISFDGRWLHAAPADLASLIG 238
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A7S2J122_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2J122_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 1.300e-7
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPECA--APIEADASRAWLSSPSLGKHICFDGRWLHAAPVDL 177
            T +Y SA GAPT++LE     +    AP   D S A  S P +GKHI FDGRWLHAAP DL
Sbjct:  152 TVTYLSASGAPTVVLEAVEEQQAGVCAPKRLDVSAAHWSRPRVGKHISFDGRWLHAAPADL 212
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A813EE87_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EE87_POLGL)

HSP 1 Score: 62.4 bits (150), Expect = 3.170e-7
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPE-----CAAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADLLG 192
            T +Y S  GAPTI+LE    PE        P+  +  R  LS P +GKHI FDGRWLHAAP DLA  +G
Sbjct:  188 TVTYLSEGGAPTIVLEAVEPPEGDGGGATRPLAVE--RGHLSWPQVGKHISFDGRWLHAAPADLASPVG 254
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A835ZJA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJA8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.340e-7
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELPGRPECAAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADL 186
            T +Y S  G PT++L       C   +E   +R  LS P++GKH+CFDGR+LH AP  LAD+
Sbjct:  159 TVTYLSDVGGPTVVLNKRDPVTCGDSLEGTITRCCLSRPAVGKHMCFDGRYLHGAPAALADI 220
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BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Match: A0A7S3Z950_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z950_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 6.160e-5
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 TFSYFSAWGAPTIMLELP-GRPECAAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLAD 183
            T +Y +  GAPT+ LE   G P     I     + +LS P +GKH+ FDGRWLH AP +L D
Sbjct:  155 TVTYLTDVGAPTMFLEKTVGSPIVGHSIAGPIKKGYLSWPQVGKHVSFDGRWLHGAPDELTD 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10637.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G1D6_ECTSI2.410e-1030.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMS0_9PHAE4.300e-1052.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A813KGZ6_POLGL3.190e-852.17Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S2J122_9DINO1.300e-754.10Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A813EE87_POLGL3.170e-750.72Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A835ZJA8_9STRA9.340e-745.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Z950_9EUKA6.160e-545.16Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10637contigP-wetherbeei_contig10637:974..2296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1D6
Model size1323
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-07
EggNOG OGs2BVEA@1|root,2S26B@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005640.1
Cds size1056
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185878.327667-UTR-P-wetherbeei_contig10637:973..12011683185878.327667-UTR-P-wetherbeei_contig10637:973..1201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10637 974..1201 -
1683185878.3504524-UTR-P-wetherbeei_contig10637:2257..22961683185878.3504524-UTR-P-wetherbeei_contig10637:2257..2296Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10637 2258..2296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185878.340837-CDS-P-wetherbeei_contig10637:1201..22571683185878.340837-CDS-P-wetherbeei_contig10637:1201..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10637 1202..2257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10637.1.1prot_P-wetherbeei_contig10637.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10637 1202..2257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10637.1.1

>prot_P-wetherbeei_contig10637.1.1 ID=prot_P-wetherbeei_contig10637.1.1|Name=mRNA_P-wetherbeei_contig10637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
MLELPGRPECAAPIEADASRAWLSSPSLGKHICFDGRWLHAAPVDLADLL
GLGPPTAGGASAGVGAPAAGAPSGAAAPGVKATPGAAGEEKASAGGARDA
AGAARKGAKVAALKGASVKAPEAAAAAAASAAEPSARSKRARDGASEAAG
RRKQSKARNGKARSSAAQAARPKRVTFLVNVWVNHRPESAVPMAEAAAAA
LSQGRVALDCLSRVAVTVIPPPATATLLAGAAAAAPPDGSVAEASAAPAA
GEAPPSLAAPAAATSAVAVAASCVRSWNFGEVGTEARRQVHEAHVVSMPM
NAAAVRRGLAEGKDSFELRFEAPHLAIVRKKPAPPAQAAEAGKRRYGAGG
R*
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mRNA from alignment at P-wetherbeei_contig10637:974..2296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10637.1.1 ID=mRNA_P-wetherbeei_contig10637.1.1|Name=mRNA_P-wetherbeei_contig10637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1323bp|location=Sequence derived from alignment at P-wetherbeei_contig10637:974..2296- (Phaeothamnion wetherbeei SAG_119_79)
ACTTTCAGTTACTTCTCGGCGTGGGGCGCTCCGACGATCATGCTCGAGCT
GCCAGGGCGGCCCGAATGCGCCGCCCCAATCGAGGCCGACGCGTCGCGGG
CATGGCTGAGCTCCCCGTCGCTGGGGAAACACATCTGCTTCGACGGCCGC
TGGCTGCACGCCGCTCCCGTCGATCTCGCCGACCTGCTCGGGCTCGGGCC
TCCGACAGCAGGCGGGGCGTCGGCGGGCGTGGGTGCGCCGGCGGCAGGGG
CACCGTCGGGGGCCGCGGCACCCGGGGTGAAGGCGACGCCGGGAGCAGCA
GGGGAAGAGAAAGCGTCGGCAGGAGGTGCGAGAGATGCGGCGGGAGCAGC
GAGAAAAGGGGCGAAGGTAGCGGCGCTGAAAGGAGCATCGGTAAAGGCGC
CAGAGGCTGCTGCGGCTGCGGCGGCGTCGGCGGCGGAGCCCTCGGCTCGC
AGCAAGCGAGCACGGGACGGCGCGAGCGAAGCGGCTGGTAGACGAAAGCA
GTCAAAAGCTCGGAACGGGAAGGCACGGTCATCGGCTGCACAAGCCGCCA
GGCCGAAGCGCGTCACTTTCCTCGTGAACGTGTGGGTCAACCACCGGCCG
GAATCTGCTGTCCCCATGGCAGAAGCCGCTGCCGCGGCGCTCAGCCAGGG
GCGCGTGGCTCTTGACTGCTTGTCGCGCGTGGCGGTCACAGTCATTCCGC
CTCCAGCAACGGCAACGCTGTTGGCAGGGGCTGCAGCCGCGGCGCCACCG
GACGGCTCAGTGGCGGAGGCGTCAGCCGCGCCGGCGGCTGGAGAGGCACC
GCCGTCACTAGCGGCGCCGGCAGCAGCGACCTCGGCGGTGGCGGTGGCTG
CCAGTTGCGTTCGCAGCTGGAACTTTGGGGAGGTCGGCACGGAGGCGCGG
CGGCAGGTACACGAGGCGCACGTGGTGTCGATGCCGATGAACGCCGCGGC
GGTGCGGCGGGGGCTCGCCGAGGGGAAGGACTCTTTCGAGCTAAGGTTCG
AGGCGCCTCACCTCGCTATAGTGCGCAAAAAGCCCGCACCACCGGCGCAG
GCCGCCGAGGCGGGAAAGCGGCGGTATGGCGCTGGCGGGCGTTGAACACC
GGCGCCAGCATAAGATGCTGCGCCAGGTAACAGACAGGTTTGAAACTTTC
TGACAAGAATTAGCAACTGCCATCATCGCCCTTTTAGAATTTCACCGTTC
ATTTTACATTCTCTGCTGCACACCTCCGTCGCCAGCGCCGAGCCAGCCAG
CCAGATATGCCTCTAGCTACCGATCGCCACGGCGTGCGTTGGGAAAGCGA
GGCAGGGTTGGTGCCCGGGCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10637:974..2296-

>mRNA_P-wetherbeei_contig10637.1.1 ID=mRNA_P-wetherbeei_contig10637.1.1|Name=mRNA_P-wetherbeei_contig10637.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig10637:974..2296- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGAGCTGCCAGGGCGGCCCGAATGCGCCGCCCCAATCGAGGCCGA
CGCGTCGCGGGCATGGCTGAGCTCCCCGTCGCTGGGGAAACACATCTGCT
TCGACGGCCGCTGGCTGCACGCCGCTCCCGTCGATCTCGCCGACCTGCTC
GGGCTCGGGCCTCCGACAGCAGGCGGGGCGTCGGCGGGCGTGGGTGCGCC
GGCGGCAGGGGCACCGTCGGGGGCCGCGGCACCCGGGGTGAAGGCGACGC
CGGGAGCAGCAGGGGAAGAGAAAGCGTCGGCAGGAGGTGCGAGAGATGCG
GCGGGAGCAGCGAGAAAAGGGGCGAAGGTAGCGGCGCTGAAAGGAGCATC
GGTAAAGGCGCCAGAGGCTGCTGCGGCTGCGGCGGCGTCGGCGGCGGAGC
CCTCGGCTCGCAGCAAGCGAGCACGGGACGGCGCGAGCGAAGCGGCTGGT
AGACGAAAGCAGTCAAAAGCTCGGAACGGGAAGGCACGGTCATCGGCTGC
ACAAGCCGCCAGGCCGAAGCGCGTCACTTTCCTCGTGAACGTGTGGGTCA
ACCACCGGCCGGAATCTGCTGTCCCCATGGCAGAAGCCGCTGCCGCGGCG
CTCAGCCAGGGGCGCGTGGCTCTTGACTGCTTGTCGCGCGTGGCGGTCAC
AGTCATTCCGCCTCCAGCAACGGCAACGCTGTTGGCAGGGGCTGCAGCCG
CGGCGCCACCGGACGGCTCAGTGGCGGAGGCGTCAGCCGCGCCGGCGGCT
GGAGAGGCACCGCCGTCACTAGCGGCGCCGGCAGCAGCGACCTCGGCGGT
GGCGGTGGCTGCCAGTTGCGTTCGCAGCTGGAACTTTGGGGAGGTCGGCA
CGGAGGCGCGGCGGCAGGTACACGAGGCGCACGTGGTGTCGATGCCGATG
AACGCCGCGGCGGTGCGGCGGGGGCTCGCCGAGGGGAAGGACTCTTTCGA
GCTAAGGTTCGAGGCGCCTCACCTCGCTATAGTGCGCAAAAAGCCCGCAC
CACCGGCGCAGGCCGCCGAGGCGGGAAAGCGGCGGTATGGCGCTGGCGGG
CGTTGA
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