mRNA_P-wetherbeei_contig10619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10619.1.1
Unique NamemRNA_P-wetherbeei_contig10619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10619.1.1 vs. uniprot
Match: D8LCG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-8
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   19 VRLCVVAPTVNIDLGGGRRSSGSGGSGGERVSTPLPREQIRAFIQSVVLPRFTRILLLP 195
            VRLCVVAPTVNI+L    RS  SG          LP E+IRAF++  VLPRFTR+LL P
Sbjct:  455 VRLCVVAPTVNINLDDRSRSFCSG----------LPEERIRAFVEESVLPRFTRVLLQP 503
[Close]
BLAST of mRNA_P-wetherbeei_contig10619.1.1 vs. uniprot
Match: A0A0M0JX88_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX88_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 1.790e-5
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:    1 DLPACSVRLCVVAPTVNIDLGGGRRSSGSGGSGGERVSTPLPREQIRAFIQSVVLPRFTR 180
            DL   SVRLCVVAPTVN+  GG   +             P+P+E+IR  ++  VLP FTR
Sbjct:  198 DLMQSSVRLCVVAPTVNVTFGGQIHAH----------KAPMPKERIRQTLEKEVLPTFTR 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG1_ECTSI2.710e-857.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0M0JX88_9EUKA1.790e-545.00Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10619contigP-wetherbeei_contig10619:2105..2299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCG1
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.44e-09
EggNOG OGs2D168@1|root,2SGVV@2759|Eukaryota
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185877.670974-CDS-P-wetherbeei_contig10619:2104..22991683185877.670974-CDS-P-wetherbeei_contig10619:2104..2299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10619 2105..2299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10619.1.1prot_P-wetherbeei_contig10619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10619 2105..2299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10619.1.1

>prot_P-wetherbeei_contig10619.1.1 ID=prot_P-wetherbeei_contig10619.1.1|Name=mRNA_P-wetherbeei_contig10619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
DLPACSVRLCVVAPTVNIDLGGGRRSSGSGGSGGERVSTPLPREQIRAFI
QSVVLPRFTRILLLP
back to top

mRNA from alignment at P-wetherbeei_contig10619:2105..2299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10619.1.1 ID=mRNA_P-wetherbeei_contig10619.1.1|Name=mRNA_P-wetherbeei_contig10619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig10619:2105..2299- (Phaeothamnion wetherbeei SAG_119_79)
GACTTGCCTGCCTGCAGCGTGCGGCTGTGCGTGGTGGCCCCCACGGTCAA
CATCGACCTCGGCGGCGGCCGCCGCTCTTCCGGCAGCGGAGGCTCCGGCG
GCGAGCGCGTCAGCACGCCGCTGCCGCGGGAGCAGATCCGGGCTTTCATC
CAGTCAGTCGTGCTGCCGCGCTTCACCCGCATCCTGCTGCTGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10619:2105..2299-

>mRNA_P-wetherbeei_contig10619.1.1 ID=mRNA_P-wetherbeei_contig10619.1.1|Name=mRNA_P-wetherbeei_contig10619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig10619:2105..2299- (Phaeothamnion wetherbeei SAG_119_79)
GACTTGCCTGCCTGCAGCGTGCGGCTGTGCGTGGTGGCCCCCACGGTCAA
CATCGACCTCGGCGGCGGCCGCCGCTCTTCCGGCAGCGGAGGCTCCGGCG
GCGAGCGCGTCAGCACGCCGCTGCCGCGGGAGCAGATCCGGGCTTTCATC
CAGTCAGTCGTGCTGCCGCGCTTCACCCGCATCCTGCTGCTGCCC
back to top